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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0554800 |
Transcript ID | LotjaGi3g1v0554800.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Chaperone dnaJ-like protein; TAIR: AT5G61670.1 orange protein; Swiss-Prot: sp|Q9FKF4|ORANG_ARATH Protein ORANGE, chloroplastic; TrEMBL-Plants: tr|I1LNQ9|I1LNQ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0554800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97247140..97251293) extracted from Lotus japonicus Gifu genome v1.2.
AGATAAGATAGGTGTTTTTGACAGTATCAATGACAATCATGAACTTTCTATCACCAATTTCCTTTTTTACCAGCAGTACG GGGTCTGTGAGTAAAAATAAATATGCTTACTTACTTATTGTAATGGTGAAAGTACATAAATAAATACTTATATCCTAATT AATATCTGAAGCTAATGAAACCTCCGGCTCCACATTTGTTTGTTTGTCCTTTTATCTGTTTTTTTTTTGGGGTTTGGATT TAGCGGAGGAATCTGCTCCACTAAAAATACCGTGTTGGAAATATTTTAATTTTAATTTGTTGTTGGAGACTCCAATTATA TGTGACAGCGAAAACAAAACAAGCTCATTGAATCGAAGTTGAGGATGCTCTGTCTGGGTGGTGCGGTGTCGTTTTACAGC GTGAAATGCTTTCAGCTGTACGATTCCCGTTACAGGGACAACAGATTCCTCCATCACCATGTAAACCACACACCCAGATG GCGGCGCTTCATGGCCATCGATTCCGAATCTTCTTTTGCACCCTCATCCTCCATTGATTCTGATGCCACCGCTGCTGCTG GGTATTCATTCTTTCTTTCGTTTCATATGTAATTATTATTATTATTATTATTATGTACCCTCTTGTCTTATTCTGTTAAC TGCAGATTCTGCATCATTGAAGGCCCCGAAACGGTGCAAGATTTTGCTAAGATGGAGCTTCAAGAAATTCAGGACAACAT TCGAAGTCGGAGGAACAAGATTTTTCTGCATATGGAAGAGGTAATATTCTATTCATATGGAAGAGGTAAAATCATCTTCA TCTCATTTCAATTTCATTACCCTTTTGTAGGTGCGTAGGCTTAGGATACAACAAAGGATTAAAAATGCTGAACTTGGAAT TTTTAATGAAGAGCAAGAAAATGAACTTCCAAATTTCCCATCATTCATTCCATTCTTGCCTCCTTTGGTAAGGAATTATC TTTATCTGCATCATGCATTTAATAACTGCTCATATTTATCTTGTTATTGTTATTCATGAGCATCAACAATTTACTTTTCA CATATATTATTTGCAGACTTCAGCAAACCTCAAGCAGTATTATGCAACCTGTTTTTCTCTTATTGCCGGAATAATTCTTT TTGGTGGTCTCCTTGCACCCAGTGTAAGATTTTTTCAACCAAATTTCTATTTCTTTGTTGTTTGTTCCCTTTGCAATTTT CTTACTTGGAAGTCATTGACTGTGTTTACTTTTCTTGTCAAGATGAATCTAACCCTTTGAACTGGTGCGAGAAATGCAAC CGTGACAAAGATTATTTACTTCCCCATTTATGCTAGTGCTGCAACTACTTAATTTAAGTCTCATATACCCTTTACTAGGT GCACATTAAGTAAAAATTCTTTAACCCAAAAAAACTGCCCTTAACTATATTCTTGGCAATTGTAATATTGCTGCTGATGA TGCATAGGAAGTATTGCAAATTGATGTGTAAGGGACTTTCCTTAACTATATTTGTGTGTTTATGTATATTTTCTTTTTAA TATGGCATGCTTAACCTAAAAAAAGGAGTTACTTGCATATACATGGGTGAAAGTTATGCTTAATATTTAAGAGAATTGGG ATTTGATTTCAACATTTCCTTCTTTTATCCATCTTTTGTGGCATTTCGTAAACATATTCCTTTTAGTTTTTTCAACTTCC GGTCTTTCCGACTCCTCTCATCTTTGTTTCATTTTTCAGTTGGAACTTAAGCTTGGAATAGGAGGCACATCTTATGCAGA TTTTATTCAAAATATGCATCTGCCTATGCAGTTGAGGTAGTGCCCATTTCCTGATTCGTTGTTGCCTATTTACGTAGTTC TTTTCAGTGGGAGCAATGGAAAAATTGTCTTCTAGTCCCAAAACTTCAGCTTTTATGAATAGAAGCTGCAAGTTATTTGG CTACATATGAATATTTGGATAGTGTCAGTTCATTCGTTGCTGAATTGAATACCAGTGCATTCTATTTATTGTTCCTTATC TTAACTAAATTTTGTTGGTTATTCTAGTGAGGTTGATCCCATCGTGGCATCATTCTCTGGAGGAGCAGTTGGGGTAATCT CTGCATTAATGGTTGTTGAGATAAACAATGTGAAACAGCAAGAGCAAAAAAGATGCAAATACTGTCTTGGCACTGGTAAG ATTTCAAACCTCCTCTATTATCTTCATTTTACGCGTTGAACTTCTAATTGATGGAATTGAAGGGTCTTGTCATTTTTCTT CTCATGGCATTCTTTCCCCTTTTAATGCACATTATTACCAGTTTCTACTTCTAAGGAAGAGGTGGTGAAGCTTGTATGGG TTCTTGCATCATTCCAAACATATTCAAAGTGGAAAACTTCTACTATCTGTGATAACTTAGTTGTAAATGCAACTTGACAT GCCGATTATACTTTTGTTATGTCAGGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGCGCACTTGTTCTGATTGAACC AGTGTCCACAGTTAATGGTGGAGATCTGCCTCTATCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCA AGGTTCGTTATTTAGAAGTATTGACTTCATTGTGTTAGCTTTGCACTAATAATATTAGAGGACTGCCATAATCTACATAA ATAGAGCTTAATGCCTTGTTCATTGTATTTGTAATAACATCATAATTATTAACCAATGATGATACTAATAGCCAGTAAGG CAATAACCAGACCTAGACTAAGGGTGCGTTTAGGTGTTAAGCACTTATGACCATCCAAACGCGGTCAAATTTGGTATGTG TTTGTTTACCTGCTATGTCCACAACAAGTAGCAATAGTTGTTCGTAATTGTTTTTCATGCTCAATTCCTATTGCAGGTTA TGTGTCCAACATGTCTTTGTACTGGAATGGCAATGGCAAGCGAACATGATCCACGAATTGATCCTTTTGATTAAAGGTTT AAATATGATAGATATCCTAAAGAGACAATTTGAAATGTATAATTTATGTGGTATAATTTTTCTGTGGCGAAGTAATGGAA TTTATGTAAATATGTATAAATACGGAATATGAAAAAGAAAGCTGTTAAGAATAAGGGAGTTTCCCTTTATTTTTGAGAAT TGAAATGGTGCAGCAAGAAACTACAAACACAGCTTTTTGTTTTAACAAACTAAAACAAAAATACGTCTGTTCTGTACTTT TTATATGATTACTTTGAGAAAAAATTGCTCAATGATTTAACTTTTGGGAGTAAAAATTGAGAATATCGTTTGATTATTCT TTGGCTTTTAAAACTCGTTTTGAATTATCATGTATTAGGTATTAACTAACAAAGAAACTGAGTTCAAATATAATCTATGA ATGTTGAGAATAGTATTATTTATTTCCAATCATGAGTATCAGGACTAACTGCCGCTTCTCAGGACTTATGAGAATTGAGA ATTTAAATTTGAAATGTTGAGACTTAAAATAGTTAGAAAGATGATTTTTCTTTTATCGAAGGATAGGAAGATAAATAAAT GTTGAGACAGTGGTGTCTGCCATTTTAACTTGGGCCTTGGTTGTGTTAGCCAACAATTGGTCCATCTACTGATCCATTTA CTCCATTGCTCTATCAACTTCTTCCTATTCAAGGCACACACATTTTTGACAAAAAAAAAGCCAACACATTCCTCTATCTG CCATGGAGAAAGAGTTTTTTTGGAACCTTGGTTGCTGTGGTCTCTTGCCTGCAACTGGCCACTGGTGCTTCAGTTATTAT GATGGATCGGTCGAGCTTTGAAGTTGTCATTACTTGGTTGTTTGAATGGGAAGTGTGGAATCTTTTGTACAAAGCTGAAC TGTGTTCACAGCAGCTGTCCCAACTAACTTCCCCTGATTCTTTAATTTCCCTCCTTGTCGTTTTTTTCACTCTACTTGTA CCAGCTACCAGACCCGTGTTTTTTTTTTTGTCAATGGGTTCTGTAAACAAACGACAGGAGCAGTACAATTACAAGTATAA TCAGAACACAGGACTCATTAAGAGTCCAAAAAAATAGGCGCAGACCCGTGCTTTGTATTGCTTGTTAGGCTCTTAATGGG TTTCTGTAGAAAAGGCCGGTTTGTACTTGGCTTCTAAGCCTTTGGGCTTGGCCCTTTATCAATGATGAAACATC
CDS sequence (LotjaGi3g1v0554800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTGTCTGGGTGGTGCGGTGTCGTTTTACAGCGTGAAATGCTTTCAGCTGTACGATTCCCGTTACAGGGACAACAG ATTCCTCCATCACCATGTAAACCACACACCCAGATGGCGGCGCTTCATGGCCATCGATTCCGAATCTTCTTTTGCACCCT CATCCTCCATTGATTCTGATGCCACCGCTGCTGCTGGATTCTGCATCATTGAAGGCCCCGAAACGGTGCAAGATTTTGCT AAGATGGAGCTTCAAGAAATTCAGGACAACATTCGAAGTCGGAGGAACAAGATTTTTCTGCATATGGAAGAGGTGCGTAG GCTTAGGATACAACAAAGGATTAAAAATGCTGAACTTGGAATTTTTAATGAAGAGCAAGAAAATGAACTTCCAAATTTCC CATCATTCATTCCATTCTTGCCTCCTTTGACTTCAGCAAACCTCAAGCAGTATTATGCAACCTGTTTTTCTCTTATTGCC GGAATAATTCTTTTTGGTGGTCTCCTTGCACCCAGTTTGGAACTTAAGCTTGGAATAGGAGGCACATCTTATGCAGATTT TATTCAAAATATGCATCTGCCTATGCAGTTGAGTGAGGTTGATCCCATCGTGGCATCATTCTCTGGAGGAGCAGTTGGGG TAATCTCTGCATTAATGGTTGTTGAGATAAACAATGTGAAACAGCAAGAGCAAAAAAGATGCAAATACTGTCTTGGCACT GGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGCGCACTTGTTCTGATTGAACCAGTGTCCACAGTTAATGGTGGAGA TCTGCCTCTATCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAGGTTATGTGTCCAACATGTCTTT GTACTGGAATGGCAATGGCAAGCGAACATGATCCACGAATTGATCCTTTTGATTAA
Protein sequence (LotjaGi3g1v0554800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLCLGGAVSFYSVKCFQLYDSRYRDNRFLHHHVNHTPRWRRFMAIDSESSFAPSSSIDSDATAAAGFCIIEGPETVQDFA KMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGIFNEEQENELPNFPSFIPFLPPLTSANLKQYYATCFSLIA GIILFGGLLAPSLELKLGIGGTSYADFIQNMHLPMQLSEVDPIVASFSGGAVGVISALMVVEINNVKQQEQKRCKYCLGT GYLACARCSSTGALVLIEPVSTVNGGDLPLSPPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 150 | 150 | - | – | |
PANTHER | 24 | 310 | 287 | 1.0E-139 | – | |
PANTHER | 24 | 310 | 287 | 1.0E-139 | – | |
Phobius | 151 | 170 | 20 | - | – | |
TMHMM | 151 | 173 | 23 | - | – | |
Phobius | 171 | 202 | 32 | - | – | |
TMHMM | 203 | 225 | 23 | - | – | |
Phobius | 203 | 223 | 21 | - | – | |
Phobius | 224 | 311 | 88 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0554800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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