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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0555700 |
| Transcript ID | LotjaGi3g1v0555700.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TATA-binding protein associated factor-like protein; TAIR: AT3G54280.1 ROOT GROWTH DEFECTIVE 3; Swiss-Prot: sp|B5BT18|BTAF1_ARATH TATA-binding protein-associated factor BTAF1; TrEMBL-Plants: tr|K7LS80|K7LS80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0555700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97342862..97346634) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCCAGCAGTCATCTAGGCTTCAGCGCTTGCTTACTCTCTTGGACAGTATCCTTCACATTTTCTTTATCTTTATTAC TTTTACGTATCATTTGTTTTTCTTGAATTTTCTTTAACCATACCTTTAAAGCTGGGTCAACCCAAGCAACAAGGTTGACT GCTGCTCGTCAGATAGGGGATATTGCAAAATCACACCCTCAAGACTTATCCAGTCTTCTTAAGAAGGTATTGATTTTTTC TACTGTTCTATTCACCCTGCTTTTGTGGTAATATGTTTTTTTTTCTCCCTTAGTGATTTTGTATTATTGATAATGTGTGT CAGTTATTTGTCAAATTGATTTTAACTACCTATTGTTATGTGATGTTTAGGTTTCTCAATATTTGCGGAGTAAAAATTGG GATACAAGAGTTGCAGCTGCCCATGCAATTGGGTCTATTGCTGAGAATGTTAAACACATAAGCCTGAATGAACTTATTAC TTCTGTCGTGTCAAAAATATCGGAGTATGGGAAATCTTGTAGCGTCGAGGATCTGTGCGCATGGCCGTATTTACAATCAA AAATTTCAGGAAGCTCATTTAGAAGGTTGTACATTGAATTTGAATTATTCTTTGACTTTTTTCTGTTTGCATAAAAAATA CATTCCTGTTTGAGAGAAAATAATTAAATTACAAATTTGCGGCGTAGATATCCTCCAAAATAGAAATGATTATAAAAAAG GGAATATATGATAATTGGGAGTGCAGCACCAGGCTGCCTTATCCTCTACATATAAAAATTGAAAATTTCTTGAAACAGCA GTGGGCAGAACACCAAAGAGAAGCACATACTAGATTATATGCAATAACATGTTCAAGGGCAGAGTGACACCTTTAAAAGT TGCAGCATTACACTCCAATCTGATGCACCAAAAAATTGTAGAAACTGCGTACTGCCACAAAGTTTTAGCCCCTTGTTTTT ACTCAAAATTTTATGCTGAATCTTGAAAAACTGCTCCATCCAAAAAATATATAGCATTCACAATGAGGTGAAAAATTATC GTTTATAATGTTTGAGAATAGTTCCCCCCTCTTTTATTACATTGAAAATATCGTTTTAAATATATTTATTGAATTGTTTT TGCTTCTTGACAGCTTTGATATGAACAAGGTGCTTGAATTTGGAGCTTTATTAGCATCTGGTGGACAGGTAAAATATTTT TTTATAACAATCTAAGCATTACATTTTAATATTTTCTGTTCAAAATACTCATAACCTATTGTGAAAAGACTTCAGTTGTT GTTTTGTTTGGTCCAAATACTTTCTCAGAAAATGATTGAGCACCAAATGACACCATATGCTGGAAGTTGCACACCAAAAA GCCCTGCATACTCAAGCCTCCCCTCCACACCAATGATTTCCGTTCAATTTTTCAGAATAGAATTAGAAGTTCTAGGATAC TATATTGATTAGAAAATTATTTGAGATTCAGTTTTTTGATGTCAATGGCACATTGTGATCCATATAGCCGAGCTCACTTA GTGGGATATTTTGTTGTTGTATCCAGTTTTTGTTGCCAATGAAGTTCTAATAAGCCATTACATGAATCTACATGTTTATT GTGTAGAACATACAAATGCATTTCTAAATATTTTCCTCGCATCCTAGAATATTTAGAATTTCTCTATCTAGTAAATTCTA TGTAGCTATTCCCTTTTCATTAACTACTTTATCTTTAAACTTATGTTTTGGTATTCGAGCTGAACTTGACCCGTACTCTA TAATCCTGAATTCGTATTATACTTTAATTGGGTTAGTTGAACTTGTTTTACGGTGCGATTGTTTGTCCGTGAATAAAGTG CCTTTTGTGGTTCATAAATCATAACTTTTACAATGAAAGGGTCATGAATTCCTTTTGAATTTTCTCTTGTTTTGATTGCA TGTGCATGGATTGCATAAACATAATTTTATGCTTTGTTCCCTTTCAGGAATATGATATTGGAAATGATAATTCAAAGAAC CCGAAGGAGCGATTGGTTCGCCAGAAGCAAAATCTTCGACGTCGATTAGGTTAGTAAGTTTGTTTCAAGTTGTAATATGT TATCACTTATCACCTATCATAGTAGTCAATAGCGGCAAATAGCGGCGCTATAGCGGCGTAGCGGAGCGGAGCGGCTCCCT GCCGCTATTGAGATGAAATAGCGGCCAACTTCACAATAGCGGTCGTAGCGGCGCGAATAGCGGCCAAAATAGCGGCAGAT CGCGGCCAATAGCGGGAAATAGCGGCGCTATATGAACGAAGGAGAAAATGACTCAAGCCTCTTTGTTTTAAATCGTTGGG GAACCTTTTTATGGGCATGTTAGGACTTCTCAGGGCCATTATAGGTCAAAATTGAAAGAATTAAGCTTCATTCTTCATTC AGATTTGCAAATTCGACTTCTTTACCTTGCTTTTGAGAAGTTATTAGTTGTGTGTTATTGTTCAAGACTTATGATTTTTA TTTCTATTATGAATGTTATGAATTTTAGGCAATATTTGACATTGTTTGCTATTTATATGTATATAGTATTAAACTATTAA TGATATAAAATTACATAAAAAAATTCAGAATAGCGGCCATCCCGCTATGCGCTATCACGCTATCCCACTTTTGGGGCCGG CCGCTACGCGCCGCTATCCGGGATTGACTACTATGTCACCTATGAGTTAAAATGAAATAATGACTTTAAATAAGTAGGTA GTTGCTCAACATTTATGGCTTATTAAGTATCAACCCTAGTTGATGTAAATGGACACTTGTTGAGCACAACCCAAACTCTA GAAAACCACCACAAAATCAGCTTACTGAAGAAACTGGAATGGATGAGGCTTTAGAGTTTCACCATAAATATCAATAGGTT GCTTGAAGTGAAGGAAAGGGGCAATATAGCAGGAAAAGAATGAAATGACAATAGGGAGGGGAGCGAGTGACACTAGGAGA AGATAAGAGGCGTAGGGGGCCAAAGGTTGGAAGAAAATGTTGGGGGTGGGGGATATCCTGGACCTTTTTATTATGTGGTT GTTTTTTAAAGGTTTTAAATGAAGCTGTTTGTTTCAACTTTCAACTTTTGTGTTAGCGCTTGGTTATGATGACATATGCA CATTTTTTTAATAAAGTATGGTAAGCACTAAGCAGTAGTTCCATAAGGTCTCACTTGTTAAAGTTCTCATAAAGAAAAAA GTAATTTTGAATTAAAAATGCCGAAAAAAGTGAAAAACAGAAGTTGAAAAGCAGTTTTTGTGCTTTTAGCAGAAGCTAAA ATGAGTTGCTGATGAAAAAATCTCCGAAAGAAAACTATGTTATGAAATCGCTTTTCTTTTTATGAGTTGATACTTGCAGA CCTTAAGTTTATGTGCCTCTAATTCCGAAATCCTTTTCTGTTGATTTAGGTTTGGATGTCTGCGAACAATTTATGGATAT CAATGATGTAATAAGAGATGAAGATCTTATGGCACCGAAATTTGAATCACAGATCAATGGAATAGATCATAGAGTTTTTA CATCTTGTTCTGTACATAATATCCAGAAAATGGTTGCAAAAATGGTTCCTAGTGTTAAGTCTAAGTGGCCAAGTGCAAGA GAACTGAATCTTTTGAAGCGCAAAGCAAAAATAAACTCAAAAGACCAAACTAAAAGCTGGTGTGAAGATGGAAGTACAGA GGCATCAGGTGCTCAAAATTTGACTTCAAAAGGCATATGTGCGGATACAGTAAATTATGGCAAGGTATTTTTCTGTTTTA ACTGTTAACTTAA
CDS sequence (LotjaGi3g1v0555700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCCAGCAGTCATCTAGGCTTCAGCGCTTGCTTACTCTCTTGGACACTGGGTCAACCCAAGCAACAAGGTTGACTGC TGCTCGTCAGATAGGGGATATTGCAAAATCACACCCTCAAGACTTATCCAGTCTTCTTAAGAAGGTTTCTCAATATTTGC GGAGTAAAAATTGGGATACAAGAGTTGCAGCTGCCCATGCAATTGGGTCTATTGCTGAGAATGTTAAACACATAAGCCTG AATGAACTTATTACTTCTGTCGTGTCAAAAATATCGGAGTATGGGAAATCTTGTAGCGTCGAGGATCTGTGCGCATGGCC GTATTTACAATCAAAAATTTCAGGAAGCTCATTTAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGAGCTTTATTAG CATCTGGTGGACAGGAATATGATATTGGAAATGATAATTCAAAGAACCCGAAGGAGCGATTGGTTCGCCAGAAGCAAAAT CTTCGACGTCGATTAGGTTTGGATGTCTGCGAACAATTTATGGATATCAATGATGTAATAAGAGATGAAGATCTTATGGC ACCGAAATTTGAATCACAGATCAATGGAATAGATCATAGAGTTTTTACATCTTGTTCTGTACATAATATCCAGAAAATGG TTGCAAAAATGGTTCCTAGTGTTAAGTCTAAGTGGCCAAGTGCAAGAGAACTGAATCTTTTGAAGCGCAAAGCAAAAATA AACTCAAAAGACCAAACTAAAAGCTGGTGTGAAGATGGAAGTACAGAGGCATCAGGTGCTCAAAATTTGACTTCAAAAGG CATATGTGCGGATACAGTAAATTATGGCAAGGTATTTTTCTGTTTTAACTGTTAA
Protein sequence (LotjaGi3g1v0555700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLSSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISL NELITSVVSKISEYGKSCSVEDLCAWPYLQSKISGSSFRSFDMNKVLEFGALLASGGQEYDIGNDNSKNPKERLVRQKQN LRRRLGLDVCEQFMDINDVIRDEDLMAPKFESQINGIDHRVFTSCSVHNIQKMVAKMVPSVKSKWPSARELNLLKRKAKI NSKDQTKSWCEDGSTEASGAQNLTSKGICADTVNYGKVFFCFNC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 96 | 94 | 1.6E-8 | ||
| PANTHER | 4 | 266 | 263 | 5.1E-89 | – | |
| SUPERFAMILY | 11 | 90 | 80 | 2.84E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0555700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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