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LotjaGi3g1v0556400.1

Overview

Field Value
Gene ID LotjaGi3g1v0556400
Transcript ID LotjaGi3g1v0556400.1
Lotus japonicus genome version Gifu v1.2
Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G35460.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9C8P8|BH080_ARATH Transcription factor bHLH80; TrEMBL-Plants: tr|I3T2V2|I3T2V2_MEDTR Transcription factor; Found in the gene: LotjaGi3g1v0556400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:97432473..97435842) extracted from Lotus japonicus Gifu genome v1.2.

ATTAGAAACTAGAAAGACTAAAAATGAATGATAGGGTGTAGTTGAAAAAGTAAAGAAAAAAAGAGGAGGTTTAGAGGAAG GGTTGTGTTTGGCGGTGATGAAGGTATGTCCTTATCGTTAGCAGTACAGAAATGTGTATGTGCGGCTGAAATTGGAATAG AAAGTCTGAGAGAGTGAGATGCAAAGTTCCCTAATTAGGGAAGGGAGGGAAGACGAACAAGACTGCGGCGGTGACAAGAA CAAAAGCAAGCGTGTGTGTGCGTGTGCGTGTGCTTATCTTATCAGGAACGAAACAACAACACCGAATAATAGAATAAGAA AGTGCTCAGTGCCCACCATCTTTTGCTCCACCACAGGGAACACAAGTACAATCTAGCTAATTAATCCAACCCAGGCCATG ATGCAACCTGACGGTGGTTTGTCACGTTTCCGTTCAGCTCCGGCGACATGGTTGGAAGCACTTCTTCTGAAGGATGAAGA AGAACTGGAAATCCAGGAGGAGCCTTTAACCTTCACTCAGCTGCTTTCCAACGCTGCTGGCCCTGGTCCCTCCTCTTCTC TCTTTCCCTCTCATTCTCAACAATACTTGTCCAGCCCCAATCCCATCACACACCACGACCAGGTTCACTTCCTTCTATTT CTATGTTCAATGCTATTGCTACTCACTCAAACACTTATTCATTTTTTTTTTATTATTTCCCCCTAAACAAATTAATTGAC ACGGAATGAATGCCCTTTTGTTAGGAATTTGAGCATGGTGGTAAAGCAGCATCTGACATCAGAATGGACAATGTTCTAGA GGATTCGGTGCCTTGTAAACTTCGGGCAAAGCGTGGCTTTGCTACGCATCCTAGGAGCATTGCTGAAAGGGTAACTCTTC TTACTTGCATTTGCCTATCTCTCTATTTTCTTACTTCATTTTTCAAACAATTCTTTCCTTTACTGATGGACTAAACTAAA TCTTTCTATTCTTTCATTTCTCCTGGTGTTGTAGGTTCGGAGGACACGAATCAGTGACCGCATAAGAAAGCTTCAGGAAC TTGTGCCCAACATGGATAAGGTCTCCCTTTTCATCCTCAAATAAATAAACCACTGCAACTACAACATGTTTGTTCTAATG TTTCCTTCAAGTGTTATGCACCGGTTGCACATTATGCATACACAATGATGAAATGTCAAAAACAAATTATCTGGTTTCAT TCACCTGGAAATATATTACTTAGGAATGATCAATTAATTTATAAATCAAATCGAATTACACTTAATACGGTTGACACTAG GGATCTGATATGGTCATGGAAGCAGCAAAAGCTTTATAACCTGAAGTAATGTTTTTTTTATAGGCAAATGTTAGTTGTTA GTAAATTAGTTCCTTCATCAGGGTTCGGTTTGAACCCTAACCCTTCACCCGGCAAATCTCTTCATTTCCCTTAGCTCACC AAGTGAGCTACCCTTCCCCTCCTCCTTGAAGTAATGTGTTTTTTTGTTCTATAGAATCAAGCAGTCACTTATTGATTGGC CTGGGCCTGGCCATTTTGGAAGACGTTTCTGTTCGGCAGTGTTGTCAGGTTCCGATCCTACTTAGGATCAGAAGGGGGTG AAAGATTGTAGATTGTAGGATCAGAATCGAATTGTAAGATTCTACTAGAAATGCAAAAATATACTTAATAATACACATAT ATAAAAATTACATAGATGATGAAAATAACCCAGTTCAGAGGGCTACGGGTAAGAAGATGGGAAGCAATCGTGGAGGTCCA GCAGCTCGAGCAGTGCTCTCTTTCGGGGCTGAAACCCAGAAGCTCATTTATAAAACCCTGGTCCTAGTATTGAATGGGAC CGGGATCCTGCTATCCAGCCCCCATTCCTGGACAAATCTTACTCCCATGAAAGATATATGGAATCCAGATTGGAAAGCAC CAGAAACCAGAAAGATCACAAGGATCCTTAGATCGGATCGGGTCTTGACAACACTTGGAGGGAGCTTTGGTTTAACCTGA TAGCTTAGGACACTTTCTTTCTACCCACTATTTAGGGAAAGAGAGGAATAATCAAAACTCTATAGAACCGTGGAGATTTT GCTGGTGTTTGCTGTTTTAGGCTGGATCTTCACATCATTTCCAGCTGTTGGATCTCCTACTGTATGGGTTTCTGTTCTTG GTCAAAGCTAACGGTTTCTTGGATGTTGTCTCTTTGTTTGTTCTACAAAGCTTCTCAAACTGGTGGTGGTGGATTTCCTT TCTTACTCTTCTTGCTTTCTTTGATGTACGTTGCTTAGTGCAACTGCCCTTCCACTTAGAAAATTGTGTGTAGAAAACTT AACAATTGACCACAAGGATATGTTTTCATACATGCTCCGAAAGGTGAAAGATCCATTTATATAACAACAGTTAATGCCTG TTGTGTTTACTTTGTTTGGGGCTTGTAAGTTGTAACCCAGCATGTTCGTGATCTGATTCTTTGTGGTTTCCTTTACTAAA ATGAAAACCTCACTCTTAGCCGGATTTGGGGTGAGACCAGAGATGATTTGTAGTTGTTTAACGTGGCATGTACTTTTGTT GTTGTAGCAAACAAATACTGCTGATATGCTAGACGAGGCGGTAGCTTATGTAAAGTTTCTTCAAAACCAAATTCAGGTAG TGTGTTGTGATTTCATATTTTATAATTTCGGGGTTGGGTTTCATTTAATCTTTAATGAGAAACTTGAAACATTGCAGGAA CTATCAGAGCACCAACGGAGGTGTAAATGCATGGTTCAAGAGTAAATTGGTGATTCCGTTCCATAGTGATTTTGGCTGCT TAGGCATTGTTGCATATTATCAGATATTTGGTGTTCTAATGAAGATCAATCATTCACTGTGATTGCTGCTGATTATATTT TATCAAGCAATATCTCAAGAACCTTAGAAGATGAAGTTCTGCCACATTCTTATGCAATGTATACAAGTTCAGGGTGCCTT TCACGAATTCACTCAAAGAAAAATCCCATTAGTGTGATTACTGTGGTATAGTTGAACAGTTGCAGTGCTGTGTACTCAGT TTCATATTAAACAGCTATTTATGTTAGCTTCTTTATACAGAATCAAACAATGTACTCCGTACTAATGTAAAAGGCACAGC ATATGATCACGGAGCTCTCCTAAAAGAGACAGTGAGTGATAAAACAAGAGGTGAAGAGTGTTTGATTAAAGTTGGATCCA ATATAACAACAGTTTTTTACAAATGTTCAATGTTTTGTTTGATTAAATGATAAGCCGTTTTTATGAAGAAGTTATACGTG TTATATACCTAACAAAGAAGGTAGTATTGCGAAGACACAAACAATTGATTCAAGATTGAAACTCGAATAATTCTTTTTAT TCAGCAATTA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0556400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGCAACCTGACGGTGGTTTGTCACGTTTCCGTTCAGCTCCGGCGACATGGTTGGAAGCACTTCTTCTGAAGGATGA AGAAGAACTGGAAATCCAGGAGGAGCCTTTAACCTTCACTCAGCTGCTTTCCAACGCTGCTGGCCCTGGTCCCTCCTCTT CTCTCTTTCCCTCTCATTCTCAACAATACTTGTCCAGCCCCAATCCCATCACACACCACGACCAGGAATTTGAGCATGGT GGTAAAGCAGCATCTGACATCAGAATGGACAATGTTCTAGAGGATTCGGTGCCTTGTAAACTTCGGGCAAAGCGTGGCTT TGCTACGCATCCTAGGAGCATTGCTGAAAGGGTTCGGAGGACACGAATCAGTGACCGCATAAGAAAGCTTCAGGAACTTG TGCCCAACATGGATAAGCAAACAAATACTGCTGATATGCTAGACGAGGCGGTAGCTTATGTAAAGTTTCTTCAAAACCAA ATTCAGGAACTATCAGAGCACCAACGGAGGTGTAAATGCATGGTTCAAGAGTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0556400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMQPDGGLSRFRSAPATWLEALLLKDEEELEIQEEPLTFTQLLSNAAGPGPSSSLFPSHSQQYLSSPNPITHHDQEFEHG GKAASDIRMDNVLEDSVPCKLRAKRGFATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ IQELSEHQRRCKCMVQE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR16223:SF145
3 61 59 2.7E-71 –
PANTHER
PTHR16223
3 61 59 2.7E-71 –
MobiDBLite
mobidb-lite
43 71 29 - –
MobiDBLite
mobidb-lite
43 84 42 - –
PANTHER
PTHR16223
78 176 99 2.7E-71 –
PANTHER
PTHR16223:SF145
78 176 99 2.7E-71 –
ProSiteProfiles
PS50888
107 157 51 14.602
IPR011598
SUPERFAMILY
SSF47459
109 175 67 3.4E-17
IPR036638
Gene3D
G3DSA:4.10.280.10
109 177 69 1.2E-14
IPR036638
CDD
cd00083
111 162 52 4.75859E-12
IPR011598
Pfam
PF00010
112 158 47 1.2E-9
IPR011598
SMART
SM00353
113 163 51 3.3E-13
IPR011598
Coils
Coil
147 177 31 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0556400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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