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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0000100 |
| Transcript ID | LotjaGi4g1v0000100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein FAR1-RELATED SEQUENCE 9; TAIR: AT4G38170.1 FAR1-related sequence 9; Swiss-Prot: sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9; TrEMBL-Plants: tr|K7KBU3|K7KBU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0000100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60818..64654) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATAGCACTAGACAGCGTGCCCTTAAAAGCGGGGGTCATGTTTTGGACTATCTGAAGCGCATGCAGGCAGAGAATCC TGTTTTCTTTTATGCAGTCCAGGGTGACAGTGATCACTCGGGTGGGAATATATTTTGGGCTGATGCAACATCTAGGATGA ACTACTCTTATTTTGGGGATGCCGTTATATTTGACACAACCTATAGGACTAACCAGTATCGAGTTCCATTTGCCTCTTTC ACTGGGGTTAATCATCATGGGCAACCTGTGTTATTTGGTTGTGCATTGATTGCGAATGAATCTGAGTCCTCATTTGTATG GTTATTCAGGACTTGGCTCCATGCCATGTCTGGACGCCACCCTGTTTCCATTACAACAGATTTGGACCCATTCATACAAG TTGCTGTTGGCCTAGTTTTCCCTCCAACTCGCCTTCGGTTCTGTAAATGGGGCATATTCCGAGAAACCCGAGGCAAACTG GCTCATCTATGTCAGTCACATCCTGCTTTTGAAACTGAGTTCCGGGAATGTCTTCTTGAGAGTGAGACCATTGATGAGTT TGAGTCTTGTTGGTACTCACTCTTGGAAAGATACCATGTCATGGATAATGAGTGGCTTCAGTCAATGTACAATGCACGAC AACATTGGGTCCCTGTCTACCTGCAGGACACTTTCTTCGGGGAGGTATCTTTAAAGGAGGGAAATAAGTGTTTGAACCTT TTCTTTGATGGATATGTAAATGCATCTACCACTTCACAGGTATTGGTTAGACAATATGAGAAAGCAGTATCAACTTGGCA TGAAAGAGAATTAAAAGCAGATTATGAAACTACCAATAGCAGCCCAGTTTTAAAAACACCATCTCCAATGGAAAAACAAG CTGCAAGTCTTTATACTAGAAGGATATTCATGAAATTCCAAGAGGAGTTAGTAGAGACACTTGCAAATCCTGCTACAAAA ATTGATGATTCGGGAACTACCACTACTTATCGAGTTGCCAAATTTGGGGAAAACAGAAAATCTCATGTTGTCACATTCAA TTCTTTTGAGATGAAAGCTAGTTGCAGCTGCCAGATGTTTGAATATTCAGGAATCATTTGTAGGCATGTATTAGCAGTCT TCAGGGCTAAAAATGTGCTTACGCTTCCATCTCAGTATGTGTTGAAACGATGGACAAGGAATGCAAAAACTGGTGTGTTG TTAGATGGACATGCATCTGAATTGCCTAGTAGTACTCGAGAGTCTGTAACAGTTCGCTACAACAATCTGCGTCAAGAAGC AATTAAATATGTGGAAGAAGGTGCAAAATCGATCCAAACCTATCATGTTGCAATGAGATCTTTGCAAGAAGCTGCTAAGA AGGTTTCTGCCTTAAGAATTCAGAGTACTGGAGCAATAGAAGGGGCTACAATAGCCAATGGAGAAAGGGGCGAGTTGCTT GCAGGAGATGAAGTTTTTCCTAGCTATCAATCTGTGGTTAGTTTCTTTGAACTTGTGATCTTTTCTTAGATCGTAATTCG TAAACATAATGGTAAGTTGGACTCTCACCAGAGAAATCATGAAACAGAGTCTTTGCTTGATGAAGTCAACAATGACCTGC ATTCAAGGAACTATACTATTAGTGTATTCTAGTGTTTGCGTGTCAAGGCAAAAAAGTTGTAAGAAAGGAGTTTTCTCCCC TTCTAAAATAGATAAGCTGGGCACCCCGAGATCATTCATTTTGTTCTTTTACAGTGAAGGGACTAATACAAAGGTTGAAT GGAAAGTGTAAACTAGAAGAAAAGGGCCTAAAATGTCAAAGTCTTTTGGGCCCGACAATTAATAGGATAGAATGATCATT GGTGATAGGTAGCTGTTAATGATTGTTTCAGAGTTAATTAGTTAGGGAGTTAGTTAGATATGAGAGACTAAGAAAAATAG GGAGTGGGGAATAGGAGGGTATCTAGATTGTAATCAGGGAATTCTAGGGGGAGTACTGGTGTCTGGTTCTCTCGAATAAC CAGTAACTTTAGTTCATTTCTGTTAGGATTAATTATATTAGGATTTAATTTATTTTAATTTAGGATTCTATCTTTTGTTT TAGGAACTAATATTGTATTTTAGGATGTTATCTTTTATTTTGGTTAAGACTTAAGATATATTCTTTATTTCTTAGAGGTT AAGTTATCTTATTAGGATTAGTTTATTATAAATAAGAGTACCCTCCTTAGGTTAGAAACATGGATTAAGTATTTGATTTT GTAAGGGAACCAACCCTTTTGGAGGAGCCAGCCTGTTGTGTCTTTTATTTATCCTTATTATTTCAATAATATTAGACTCT TATTCAGAAAATACAAAAATATTATCCTTTATCATATTTTTCTCTTCCGTTTCACCACGTTAGGATTTTCGGATCCTAAC AATTTCTATTCTTGAATTATAATATATTTTTTTTCTCATTCACTTGCTGGTACATATCAATTGTGCTGTCAGTTAATCAA GTTAAACAGTTAATAGGAGAATTAAGAAATTGACTCACCACACTAACAGAGAATGAAATATCTGGGCGAGTAACAGTGAG GTAATTCAATTTTCCAACTAATCTCTTATATTTCTCTGGATCTGAGAGCAGCTTCCCTTGAGCTGGCACAAGTTTGGCAT TGGGATCCATAGGAGTGTCAACTAGGTTGGCTTTTAACAATCCTGTCTCTTCCAAAATATCCTTAGCATGCTTTCTCTGT GAAATCACAATCCCTTGTTTGGATTGTGCCTCCTTTATGCGCAAGAAATAATGAAGTCTACCAATGTCTTTTATCTAGAA GTGATGACAAAGGTGTTGTTTTACTTGTGTGATTCCATGATGATCAATGTTTGTAATGATAATGTCATCCACATACACAA TCAAGTAAATACACGCAGCACCTGAGTTTCTATAAAAAATTGAGTGATCAGCCTCACTCTGTATCAAGAGTCTAATAAGA GGAAACCGTAATCATAATCCGTGCTTTCCTGATAGACCCACTGTCTATTGGTGCAAACTTTTTGGGAGACCCAACTGTAC CAAAAGACTAGCTCAAGAGTTGAGGATTGCCTTCCCATATATAAGGGCTATCATGGCCATCTCTAGTCAATACAAGACTA CTCAACACACCCTCTCACGCCTAAGGCCGGACATCTGGAGCGTGGGATATGCAAAGGAATGAATATCTAAGGGTACCACA TATACGGGGGGTCTCCCCTAACGGATCCAGGTTAGACTCTGATACCATGTTAAATGAGAAGAGACAATAGATATTTGGTG AATTTGTGTGTTTCAACTACACAACGGAGTTCATTATATATAATAGGAGCAATAAATGTACAATATCATTGCTACCCTAT TTACAATGATTATGCTACCTATTTACAATTAATAAAATATATCATACTTAAATAAAAGACATCCTAGTTAATGTGACCTC ATATTTGTGCTTATGTTGTTGAGCCTTTTCACATTATGCTTGTGCTATAAATATATAGTTTCACTTTTACCAATAATTTA ATAGAATTGTGGAACCAAAATTACGTGTATGTCCCTTTGTGCACGGTACTGTAAGAACTAAGAACCTCATTTTGTATGTG GCTTTATGTTTGATAATACACAATATACACATTATAAGTCAAAAGTTTCCCTTTGGATCCTTTTCACAGGCAGATAAGCA AAAGAAAATCCAAGAGTTGACTGGGGAGTTAGAGATTACAAATCAGCGATGTGAAGTCTATAGGGCAAACTTGCTGGCTG TGCTGAGGGATATGGAAGAACAGAAGTTAAAGCTATCAGTGAAGGTCCAAAATGCAAGACTTAGTTTGAAAGAGTGA
CDS sequence (LotjaGi4g1v0000100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAGCACTAGACAGCGTGCCCTTAAAAGCGGGGGTCATGTTTTGGACTATCTGAAGCGCATGCAGGCAGAGAATCC TGTTTTCTTTTATGCAGTCCAGGGTGACAGTGATCACTCGGGTGGGAATATATTTTGGGCTGATGCAACATCTAGGATGA ACTACTCTTATTTTGGGGATGCCGTTATATTTGACACAACCTATAGGACTAACCAGTATCGAGTTCCATTTGCCTCTTTC ACTGGGGTTAATCATCATGGGCAACCTGTGTTATTTGGTTGTGCATTGATTGCGAATGAATCTGAGTCCTCATTTGTATG GTTATTCAGGACTTGGCTCCATGCCATGTCTGGACGCCACCCTGTTTCCATTACAACAGATTTGGACCCATTCATACAAG TTGCTGTTGGCCTAGTTTTCCCTCCAACTCGCCTTCGGTTCTGTAAATGGGGCATATTCCGAGAAACCCGAGGCAAACTG GCTCATCTATGTCAGTCACATCCTGCTTTTGAAACTGAGTTCCGGGAATGTCTTCTTGAGAGTGAGACCATTGATGAGTT TGAGTCTTGTTGGTACTCACTCTTGGAAAGATACCATGTCATGGATAATGAGTGGCTTCAGTCAATGTACAATGCACGAC AACATTGGGTCCCTGTCTACCTGCAGGACACTTTCTTCGGGGAGGTATCTTTAAAGGAGGGAAATAAGTGTTTGAACCTT TTCTTTGATGGATATGTAAATGCATCTACCACTTCACAGGTATTGGTTAGACAATATGAGAAAGCAGTATCAACTTGGCA TGAAAGAGAATTAAAAGCAGATTATGAAACTACCAATAGCAGCCCAGTTTTAAAAACACCATCTCCAATGGAAAAACAAG CTGCAAGTCTTTATACTAGAAGGATATTCATGAAATTCCAAGAGGAGTTAGTAGAGACACTTGCAAATCCTGCTACAAAA ATTGATGATTCGGGAACTACCACTACTTATCGAGTTGCCAAATTTGGGGAAAACAGAAAATCTCATGTTGTCACATTCAA TTCTTTTGAGATGAAAGCTAGTTGCAGCTGCCAGATGTTTGAATATTCAGGAATCATTTGTAGGCATGTATTAGCAGTCT TCAGGGCTAAAAATGTGCTTACGCTTCCATCTCAGTATGTGTTGAAACGATGGACAAGGAATGCAAAAACTGGTGTGTTG TTAGATGGACATGCATCTGAATTGCCTAGTAGTACTCGAGAGTCTGTAACAGTTCGCTACAACAATCTGCGTCAAGAAGC AATTAAATATGTGGAAGAAGGTGCAAAATCGATCCAAACCTATCATGTTGCAATGAGATCTTTGCAAGAAGCTGCTAAGA AGGTTTCTGCCTTAAGAATTCAGAGTACTGGAGCAATAGAAGGGGCTACAATAGCCAATGGAGAAAGGGGCGAGTTGCTT GCAGGAGATGAAGTTTTTCCTAGCTATCAATCTGTGGCAGATAAGCAAAAGAAAATCCAAGAGTTGACTGGGGAGTTAGA GATTACAAATCAGCGATGTGAAGTCTATAGGGCAAACTTGCTGGCTGTGCTGAGGGATATGGAAGAACAGAAGTTAAAGC TATCAGTGAAGGTCCAAAATGCAAGACTTAGTTTGAAAGAGTGA
Protein sequence (LotjaGi4g1v0000100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSTRQRALKSGGHVLDYLKRMQAENPVFFYAVQGDSDHSGGNIFWADATSRMNYSYFGDAVIFDTTYRTNQYRVPFASF TGVNHHGQPVLFGCALIANESESSFVWLFRTWLHAMSGRHPVSITTDLDPFIQVAVGLVFPPTRLRFCKWGIFRETRGKL AHLCQSHPAFETEFRECLLESETIDEFESCWYSLLERYHVMDNEWLQSMYNARQHWVPVYLQDTFFGEVSLKEGNKCLNL FFDGYVNASTTSQVLVRQYEKAVSTWHERELKADYETTNSSPVLKTPSPMEKQAASLYTRRIFMKFQEELVETLANPATK IDDSGTTTTYRVAKFGENRKSHVVTFNSFEMKASCSCQMFEYSGIICRHVLAVFRAKNVLTLPSQYVLKRWTRNAKTGVL LDGHASELPSSTRESVTVRYNNLRQEAIKYVEEGAKSIQTYHVAMRSLQEAAKKVSALRIQSTGAIEGATIANGERGELL AGDEVFPSYQSVADKQKKIQELTGELEITNQRCEVYRANLLAVLRDMEEQKLKLSVKVQNARLSLKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 546 | 546 | 0.0 | – | |
| PANTHER | 1 | 546 | 546 | 0.0 | ||
| Pfam | 62 | 152 | 91 | 1.9E-25 | ||
| ProSiteProfiles | 330 | 378 | 49 | 10.658 | ||
| Pfam | 350 | 378 | 29 | 7.5E-12 | ||
| SMART | 353 | 380 | 28 | 3.6E-9 | ||
| Coils | 492 | 519 | 28 | - | – | |
| Coils | 524 | 547 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0000100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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