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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0002300 |
| Transcript ID | LotjaGi4g1v0002300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ZF-HD homeobox protein family; TAIR: AT1G14440.1 homeobox protein 31; Swiss-Prot: sp|Q9M9S0|ZHD4_ARATH Zinc-finger homeodomain protein 4; TrEMBL-Plants: tr|A0A151SB96|A0A151SB96_CAJCA ZF-HD homeobox protein family; Found in the gene: LotjaGi4g1v0002300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:419756..421967) extracted from Lotus japonicus Gifu genome v1.2.
GTGCACTATTTGAAAACATGAGGGGTAGACGCTGCACTGTTTGAAAACATGAGGGGTAGAAACGTCGACAAAAATAGAGT AGGGGCAGAATTTGCACAAACTTAAAACATCAGGGGCCAAAAGTGCTTTTTAGCCTTGCATTTATCTCCCTCCTCCTTTT TTGTCCCACAACACCTCTATAAGCTCCTCTTGTTTAGTGCTTGACTACCTAAACCCATCTCCAAACTTGTCCTCTTCATT TCTCTCCTTTAACTTCCCCATAGTTACTCTTATTTGAAGTCACATAATCTTTTTCTTACCTCATAACCAAGCATGTCTTG TGTGAAAGGGGTTTCATGGTGTTTTTGAATCCTAGTTCTCCATGTCAGTTACCTCTATCTGCTACCTCCTTCCTCTCCAA CTGAATCATCTGTAGCAGCTGCTGACAGACATCAAAACAAGGTTCATTCATTATATATCTTCTCACTTAATTACCACTAC CTACCAACTGTTTGTCTCTCTCTGTCTGTCTCTCACTTTTGAAGAAGAAAATACCCAGAGGGGGAAAGTGTCTATCTTGT TTCCTTCAAAAGTTGTGTGCCCTACAATTCTCATCCACTTAATTTCATTTCTGCTTCTTCTCACTTTCTCTTCAACATAA TTTCAAAACTCAAGTGCTTCCCAACTCCTAGCTAGCTATACTCTTCCTTTTGAGAGAAAGAAACTATTAATTAACCATCC AGTTACTTAGTTACTCCCCTTCTGGCTAGAGCTTGTCCAACATCCATCTTGATCATGTGTTGCTCTTGAAAGATCAAAGG AGTGGTTGGTCACACTTGGAAATAACTATCAATCATTTTTGCACTTTCCAACATTTCTGTCTTGTCTCCTTCGTGTTTTG TTCTCCAAATTAAACTCAAGCAATTAATATTCAGAATGGAAGTTTCCAGCAGCCAAGAAGCTGGAGAAATCCCAATTCCA ATCCCAATCCCAATCCCAATAAACAGCAGTACTAATTATGGTGGGGGACATGCTGCAGGTAATGGACATGATCACCACAT GAATATGCATCATATTCATGACCCAGCTCCACACCATAACCACAACCACAATAACATCATATCTCCCACATCAGCAGCAG TACCTTCAAATGGCTCATCTATGCAATTGCAAGCTGCAGCAGGACTGCAACAGGAGGATGATGGAGCCTACAATAAGAAA GTGGCGATCAGGTACAGAGAATGCCTGAAGAATCATGCAGCAGGAATGGGAGGGAATGCCACAGATGGGTGTGGTGAGTT CATGCCAAGTGGAGAAGAAGGAACCATAGAGGCACTCAACTGCTCTGCTTGCAACTGTCACAGAAACTTCCACAGAAAAG AAGTTGAAGGTGAACCACCTGACTACCAACACTTCAACAGGCTTGGTCTTGGGGGAAGGAAATTCATTTTAGGAGGCCAT CATCATCATCACCACAAGAACATCTTAACTACTCCTGAGGCTCTGGGGTATCACCACCACCCTACAACAGCAGGTAACAA CAACATTCTGCCTTCTAGAACTATATTACCACCCCACCACATGATAATGCCCTACAACATTGGGAGCCTTCTTCCTTCTG AATCTGATGAACAAGAAGATGTTGCGGCTGGTGGAATGGTGGGTAGACCTGCAGGACAGAATCAGATAGTGAAGAAAAGG TTCAGGACAAAATTCACACAGGAGCAGAAAGAGAAAATGCTCAACTTTGCAGACAAGGTTGGTTGGAAGATTCAGAAGCA AGAGGAATCTGCAGTGCAACAATTCTGCCAAGAGATTGGTGTCAAGAGAAGAGTGCTCAAGGTTTGGATGCATAACAATA AGCACAATCTAGCCAAAAAGAACAATCTCCCAACAACACCATCACAACCTTCTTAATTAAACTAATTATATTTATCACTT CACTTCCTTCGTTGTTCCTATATATATAGTATGTATCTCTCTAGTCATTTCCTGATCTCTGGGTCTCTAGCTTTGAGTTC CTATTTACATTAAAATAATATCCATCTATCTTGTGCTTTAGTTTAGGAAATTGCATTTGCATTTGCATTGCTACGTGGAG TTTCAGTTTCAGTCATGTTTCTCTCCTCTACCCATCATGTATGCAGGACATGGAATCTATGCAATAGAATAGACTCTTGA GGTATGATATATATGTATTATTAATAGAATTGCATAAACACTTCAATTTCCA
CDS sequence (LotjaGi4g1v0002300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGTTTCCAGCAGCCAAGAAGCTGGAGAAATCCCAATTCCAATCCCAATCCCAATCCCAATAAACAGCAGTACTAA TTATGGTGGGGGACATGCTGCAGGTAATGGACATGATCACCACATGAATATGCATCATATTCATGACCCAGCTCCACACC ATAACCACAACCACAATAACATCATATCTCCCACATCAGCAGCAGTACCTTCAAATGGCTCATCTATGCAATTGCAAGCT GCAGCAGGACTGCAACAGGAGGATGATGGAGCCTACAATAAGAAAGTGGCGATCAGGTACAGAGAATGCCTGAAGAATCA TGCAGCAGGAATGGGAGGGAATGCCACAGATGGGTGTGGTGAGTTCATGCCAAGTGGAGAAGAAGGAACCATAGAGGCAC TCAACTGCTCTGCTTGCAACTGTCACAGAAACTTCCACAGAAAAGAAGTTGAAGGTGAACCACCTGACTACCAACACTTC AACAGGCTTGGTCTTGGGGGAAGGAAATTCATTTTAGGAGGCCATCATCATCATCACCACAAGAACATCTTAACTACTCC TGAGGCTCTGGGGTATCACCACCACCCTACAACAGCAGGTAACAACAACATTCTGCCTTCTAGAACTATATTACCACCCC ACCACATGATAATGCCCTACAACATTGGGAGCCTTCTTCCTTCTGAATCTGATGAACAAGAAGATGTTGCGGCTGGTGGA ATGGTGGGTAGACCTGCAGGACAGAATCAGATAGTGAAGAAAAGGTTCAGGACAAAATTCACACAGGAGCAGAAAGAGAA AATGCTCAACTTTGCAGACAAGGTTGGTTGGAAGATTCAGAAGCAAGAGGAATCTGCAGTGCAACAATTCTGCCAAGAGA TTGGTGTCAAGAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAGCACAATCTAGCCAAAAAGAACAATCTCCCAACA ACACCATCACAACCTTCTTAA
Protein sequence (LotjaGi4g1v0002300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVSSSQEAGEIPIPIPIPIPINSSTNYGGGHAAGNGHDHHMNMHHIHDPAPHHNHNHNNIISPTSAAVPSNGSSMQLQA AAGLQQEDDGAYNKKVAIRYRECLKNHAAGMGGNATDGCGEFMPSGEEGTIEALNCSACNCHRNFHRKEVEGEPPDYQHF NRLGLGGRKFILGGHHHHHHKNILTTPEALGYHHHPTTAGNNNILPSRTILPPHHMIMPYNIGSLLPSESDEQEDVAAGG MVGRPAGQNQIVKKRFRTKFTQEQKEKMLNFADKVGWKIQKQEESAVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNLPT TPSQPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 314 | 298 | 2.1E-109 | – | |
| PANTHER | 17 | 314 | 298 | 2.1E-109 | – | |
| MobiDBLite | 25 | 76 | 52 | - | – | |
| MobiDBLite | 38 | 55 | 18 | - | – | |
| MobiDBLite | 56 | 76 | 21 | - | – | |
| Pfam | 98 | 150 | 53 | 2.4E-28 | ||
| TIGRFAM | 99 | 150 | 52 | 5.3E-31 | ||
| ProSiteProfiles | 100 | 149 | 50 | 27.102 | ||
| Gene3D | 239 | 314 | 76 | 7.5E-32 | – | |
| SUPERFAMILY | 245 | 314 | 70 | 6.14E-19 | ||
| TIGRFAM | 253 | 309 | 57 | 2.3E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0002300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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