Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0003500.1

Overview

Field Value
Gene ID LotjaGi4g1v0003500
Transcript ID LotjaGi4g1v0003500.1
Lotus japonicus genome version Gifu v1.2
Description Glutathione S-transferase; TAIR: AT2G02380.1 glutathione S-transferase (class zeta) 2; Swiss-Prot: sp|P57108|GSTZ_EUPES Glutathione S-transferase zeta class; TrEMBL-Plants: tr|I3SS38|I3SS38_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0003500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:668409..672791) extracted from Lotus japonicus Gifu genome v1.2.

CTTTCTCCGGTGGCAATAAAAAGAGAAAGAGAAAAGGACAAGTACTAGTAGTGTAGTGTAGTGTAGTGTTGTGTTGTGTT GTGTTGGTATCTCGCCACGCCTCATTTTGTTTCAAGTTGGAAGTATCAGCACGCCATTGCTCTTCTCCGAGCAGACGCAG AGCATTCCAATTCCAATGGTATGATTGATTTGCTCTCTGTAAGCACGTGTTTGATTTGATGATCACAACAACAAGTCAAA TTGTTTGATTGAGTGATTATGATTTTGATTTGATTGAATAGGCAACAAGTCAAAGTGTTGTTGGCGAAGAACAACAAGAT AACAAGCTCAAGCTTTATTCATATTGGAGGAGCTCTTGTTCCTTCCGAGTCCGAATTGCTCTCAACCTCAAAGGTACTGG TACTAGACTAGTAGCATATTTGGATTAGACTTTATTTTCCGCATAATCATTTCTAACACTCAAAAACTAGATTTATATTT GGAAATCATTCTACAATTAATTAATTCTCAAGTCAAAATCAATTATAGCTTGAGTTTGCTGCATCCATTTTGATTTCAGG GCTCAAATATGAGTACAAACCAGTCAATCTGTTGAAGGGAGAACAATCTAACCCTGGTTTGTTTTCTTTCTTCTACCTTA ACCTAATGTAACCATTCTAATCCTGATTCCTGAATAAATAAATATAACTAATCTCACCATCATTCATTTCATTTTCATTT TCATTTTCATGTCTTCAGAGTTTCTCAAGCTCAACCCTGTTGGCTGTGTTCCTGTTCTGGTCGATGGCCCTGCTGTCATC TTTGATTCGTTCGCCATTATTATGGTTCGTCATTTCTTCAAAATGCTTGCTTTCCCTTTCAAACAAATCATCATTTTCAT GTTTTCTGTTTGCAGTATTTGGAGGACAAGTATCCGAACCATCCTTTGCTTCCTCGTGATATTAATCAAAGAGCAATCAA TTTCCAGGTACCAAAAAACAACAATCAAACTAATCAACTAATGCTGGCTCAATTGTCCAATGCAGTGCTATTGGGATCCA TGTCTTTTGACACAAGTCATCATATTCCTGTTCAAATAAAAATTTAATCCTGCTCTGCTATGTTAATTGACTCTCCTGAT TCTCTCTTACTCAAATTAAGTTGGGCGTTTCTTTTTTGGGGTCCTGGCCCTAACTAAGATATGGGTTCTCTTTTATTGAC TTGATCCACAGGCTACCAGTATTGTTTTCTCAGCAATACAACCTCTTCATAACTTGGGTATTCTGGTATGCATGCCACTT CTTCTTTCCTTAAAAAGTTTTAGGATTAGTGTACCAATTTCTGGATACTTGAGTGGATATGATTTGTTCATTGTTATTTT GCTTTTCCATTTGTAGAATTACGTTGGGGAAAAAGGTGGCCCTGATGCAAAAATTCCTTGGGTCCAGAGTGTAATTAGAA AAGGCTTCACAGGTGAGATTCGAGTCATTTGATTAACCTGCTCACTGAGCACCATAAAATAGCAGGAAAAGAGGTTGTTC CATAGTTAAGGGTTGTACATTTATTCAAAGTTAAGCAGTTTACTTTGATATACTTGCTTATTGCATATGATAGCAGGTCA TTTATAGAATAAGGTTTACTTTTTCAATCTTAGTTCTATAGATCCCATTTTTGCGAAAGTGAAGAGCCAAATTTCATATC TACATGACCTGGAAAGGGTATGACCCCCCATTAATCAATTTTTTCTTCCTGTAATCTGTGTCCTACTATCGTTCATCCTT ATCTGTGTTTTCTCCAATATTGTAAGCTGAACTTGACTATCATACTGACAACATTAACAACAAAATAATATTGAACTGGT AACTGAACAATTGAAACTCCGCTTGTTGAGCACTGCATCTCTTGATAATGATTCAAACTTGAAGATGAATGTATGAAATG GACAGAAAAAAAAGAGAGGAACATATGATGATATTCACTTTCTATTCAAGGTTTGAAATTTTCCCTATGTTAGTAGTTCA TGAGACTGTTATCAACCAGCTGTATTGGTGATAGTTGGTGTCTACCACACCATCAGAACCTCAACTGTTTTGAGCTGAGT GCTTCTATAGGTTTTGAAACTTAACTGCTCATAAAAGACGTTGTAAACTGTAAAGGTACAAATCTGATCTGAACCAAATA TAGTGAAGTGGATATTTTGAGTGGTCAAAGGAAAAGCTAATATCCCTGGTGGAAATAACATATTTTAGCTTGAGAGCTCT GGTCTTGGATATCTTTTAAAGGACTAGTAGCATGTTATGTTAATGGTTGAAGAAAATATTAGTGTGGTATCTTGTCCTCC CTCTTCATGTTATGTCCTTCCTTACCAAATACAGATTTCAGTTTGTTTTTAGCTTAATCTAATACTATTTACAAATACAT GTGTTTCAGCACTTGAAAAGCTATTGAAAGAACATGCTGGAAGATATGCAACTGGAGATGAAGTTTTCATGGTGTGTGGA TAACCATTGGAGTTCAGTCATTTGAAAATTAATAATATGAATAGATATATTCTTTTCAAGGGTCCAGTAGCCTGAAAATC TTGGCTACCAAGTTCAAACATTTCGATGTGTGACCATGGAGTATAATCTAATAAATGAATTTAGGATCTGATATTTTGGA GCACACTTTGAGTGCGATTCAACTCCAAAGTCAATGACCTTGTATCTTTATCATTTGCAGGCGGATATATTTTTAGCGCC TCAGTTGCATGCTGCATATAACAGGTTCAACATTCAAATGGTAGTATTCTATCTTTGGTCTCCTGTATATCTTTGATATG GGGAAATAAATGATTGTAATGAAATGTGTGGCTTGCATTGATATGGTGCCATTACTAGAGCCTCTTTGATCGAGGATGTG ATCTTCATTGTCTTCCTTACTAATAAAACTTTGCTAGGCATTTATAGCCTTGCCGGTGTCCTCACACCGAAACAATTACG CTGTTGCCTAAATGCCTTTGGTCATTGCCTATTAGCTCTTAACTTTTAGTTTATTCAGATTTTAATAGTTGGGTCAACCC TTTCTTTTGCTTATAATATTAATATGAATGTGTATGATGAGTTAATCTTGGTCCTAGTTCAGATGTTTTTGCAAGTAGGG TTTCACATAAAGATAGAAATACATGACTTTCTGGCTTTTAATACTAGTTGACTGCTGACAAAGTACTTGCAATAAAACTG GTCATTGAATCCGAAGGAGGATAGAACCTTTCACTCAAGGAGTCTTGCTTTTAGAACTATAAGAAATATGTGAAGTTATC TGTGTATCTTTAATATATGTTGGAACCTTGTGTTTTATTTAGTTTTTAAAATCTTTTCTCGGATATCACATTGCATTGCC CAAAAATATCAGATGACAAGTTACTTTTCCCTTTATTGTCCAAGCAGGATGAGTTTCCTATTCTAGCAAGGTTACATGAG ACATATTATGAGATCCCAGCATTCCGGGAGGCTTTGCCAGAGAACCAGCCAGATGCAGCACGCTAGCTGAACCAATGATT TGGGACTGGTAAGTGACCTCTGAAGATTTTTTTGGAGCCGCCATTTATGATTTGCTTAGCTTTTGAATGTGTCAACAATG TACATCATGCCAATTTAGTTGGCTTTGGTTATCTTTGGCACAGTTTTTAATTTTCAAATTGATTACAGAAATGCGACCGC ATGTTAAGTTGGAGGAATTGCAGCTGGGAGTATTGATTTACCGTGTGGTTGAATTTGTACTAATGTAAGATACTCTATGT AGCAATAAGGTTGCCACCTGCAACATTGGATTGCATGCTTCATGTACAATACAAGTGGATAACTTATTTGGGTTATTAGT CTAATATCCTATGTTTGGTTTGCACCTGATTCCCGATCCATGTAGCTTGACGGATGGTTCTTAATGATGTTGTCCCTACA TCTAGTGCATGTTTGGATACACGGCGAAAAACTATGGTGAGCCAACTATATAAGATATGTGTAAAAAACTATATTGGTAT AAATAAAATTGTTCTTCCTTGGCTGAAAAAAAAATTGTCTTACTTTAAATACATGCATAGTTGTAAAAGAACCAGCTAGG ATTGCAAGTTCTTTCCCATCCACAGCATGTTCCTATCCTACCAAGCATATATGTATGCTTTTGTTTTAGATTAGTCCAAA GAGGTAAAGACATCTAAATGGTACTTATATAATCTTGATTTTCTCCTTTTTTTCGGTAAGGGAATTAGAACTTAATATGG GAAAGGAATGCAAATGAAATGTCAAGATTAGAAATTCAGATAGTGTAACAAATAAAAGAAATGGAATTGTTGTGTGCGTG TTTTTTTTAGAGTGAAATTAATTACATCGATCTCTCATGACAAATCTTTCTCTATAAACATTG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0003500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACAAGTCAAAGTGTTGTTGGCGAAGAACAACAAGATAACAAGCTCAAGCTTTATTCATATTGGAGGAGCTCTTG TTCCTTCCGAGTCCGAATTGCTCTCAACCTCAAAGGGCTCAAATATGAGTACAAACCAGTCAATCTGTTGAAGGGAGAAC AATCTAACCCTGAGTTTCTCAAGCTCAACCCTGTTGGCTGTGTTCCTGTTCTGGTCGATGGCCCTGCTGTCATCTTTGAT TCGTTCGCCATTATTATGTATTTGGAGGACAAGTATCCGAACCATCCTTTGCTTCCTCGTGATATTAATCAAAGAGCAAT CAATTTCCAGGCTACCAGTATTGTTTTCTCAGCAATACAACCTCTTCATAACTTGGGTATTCTGAATTACGTTGGGGAAA AAGGTGGCCCTGATGCAAAAATTCCTTGGGTCCAGAGTGTAATTAGAAAAGGCTTCACAGCACTTGAAAAGCTATTGAAA GAACATGCTGGAAGATATGCAACTGGAGATGAAGTTTTCATGGCGGATATATTTTTAGCGCCTCAGTTGCATGCTGCATA TAACAGGTTCAACATTCAAATGGATGAGTTTCCTATTCTAGCAAGGTTACATGAGACATATTATGAGATCCCAGCATTCC GGGAGGCTTTGCCAGAGAACCAGCCAGATGCAGCACGCTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0003500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATSQSVVGEEQQDNKLKLYSYWRSSCSFRVRIALNLKGLKYEYKPVNLLKGEQSNPEFLKLNPVGCVPVLVDGPAVIFD SFAIIMYLEDKYPNHPLLPRDINQRAINFQATSIVFSAIQPLHNLGILNYVGEKGGPDAKIPWVQSVIRKGFTALEKLLK EHAGRYATGDEVFMADIFLAPQLHAAYNRFNIQMDEFPILARLHETYYEIPAFREALPENQPDAAR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR42673
12 225 214 4.5E-94 –
PANTHER
PTHR42673:SF7
12 225 214 4.5E-94 –
SUPERFAMILY
SSF52833
13 100 88 6.41E-31
IPR036249
Gene3D
G3DSA:3.40.30.10
14 102 89 2.1E-32
IPR036249
ProSiteProfiles
PS50404
15 96 82 27.559
IPR004045
Pfam
PF02798
16 89 74 6.1E-18
IPR004045
CDD
cd03042
17 89 73 1.65164E-41
IPR034333
SFLD
SFLDS00019
17 206 190 5.605E-45
IPR040079
SFLD
SFLDG00358
17 206 190 5.605E-45 –
TIGRFAM
TIGR01262
18 224 207 1.7E-78
IPR005955
SUPERFAMILY
SSF47616
96 223 128 2.42E-30
IPR036282
ProSiteProfiles
PS50405
101 226 126 19.307
IPR010987
Gene3D
G3DSA:1.20.1050.10
103 226 124 1.8E-49 –
CDD
cd03191
104 221 118 4.94321E-56
IPR034330
Pfam
PF14497
139 215 77 3.4E-6
IPR004046

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0009072
Biological process Aromatic amino acid family metabolic process The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0003500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…