Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0004700 |
| Transcript ID | LotjaGi4g1v0004700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT5G47800.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9FIK1|Y5780_ARATH BTB/POZ domain-containing protein At5g47800; TrEMBL-Plants: tr|K7MJ96|K7MJ96_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0004700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:783053..785881) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGTTCATGAAACTTGGGACAAGGCCAGATACTTTCTACACTGAACAAGCTACCAGGTATTGGCAACAACCCCTTTG TTAAAAATATGTATACATCTTTTTACAAATTAACATGTCTTCTGATAATGCAGAACCCTGATATCAGATATAGCTGCAGA CCTTGTGATACAAATCAATGATATTAATTATCTGCTACACAAGGTATTGGAATTATAGAATGAAAGTGTGGTGTGTGTGA AAATAAAAACCAAAACTTAATCTTGGTTCATCTATAATTCTGCTCTTTCTAACTGCAGTTTGCGCTTCTTCCAAAATGCG GCCTCTTGCAGAGGCTTTGCTATGATTCTAGTGATTCTGAGAGTGTATCTGTAGAGCTTCATGATATACCTGGAGGAGAA GATGCTTTTGAACTCTGTGCTAAGTTTTGCTATGGAATTTCAATCAAAATCAGTGCCCATAACTTTGTACCTACACTCAG TGCTGCCAAGTTTCTTAGAATGAACGACTCCATTGAGAGGGGAAACTTGGTAGGAAAACTTGAATCATTTTTCAATTCAT GCATTCTTGAAGGTTGGAAGGATTCCATTGCCACGCTTCAGAGTACTGCTACGTTACCAGAGTGGTCTGAGAATCTTGGT ATTGTCAGAAAGTGCATTGATTCAATTATTGAGAAAATTCTCACACCCCCACCACAGGTCAAGAACTCAGATCCATCAAC TCTTCCAAGTTTCTGTGGTTGTTGCCATGAACCAAAGCTTAAGCTGTAGGGTAAAGGTTTTATATTATACTTATAATACG CCCCCTCATGCCAGAGCCCTTTGGGCTTGAAGTGTGGACAATGCGTGCTCACTTGACTTATGCTGAAATTCAACTTTTTT TTCATTAGAATGAGGCAACAAGGATTGAACTCTAGACCACTTAGTGATAGAGACTCAATACTATATCATGAACCAACTAT TCCAAAAGTTTAAGCTATAGGGTGAAGAGACATGAATGCTTTTATATTATATTTCTGAGAATTGTTACTTCTTAATTTGA ACATTTTTGCTAATAAATAATGGTTCTGTGCAGGTCAAATGGTCCTTCACATACACCAGGCCTGGTTATACAAAAAAAGA GCATCATTCTGTCCCAAAGGATTGGTGGACTGAGGATGTTTCTGATCTTGACATAGATCTTTTCAGGTGCATAGTAATGG CTATTAGATCAACCTATGTTCTCCCACCACAGCTTATAGGTGAAGCTTTACATGTCTATGCCTGCCGGTGGCTACCCGGC ATCACAAAGCTTAAAACTTCAGGCAGTTCAGTGTCTCAAACAGAAGAGCCCAATAAAGAGAGAAACAGAAAAATTCTTGA AACCATTGTGAGCATGATTCCTGCAGATAGAGGGTCTGTTTCAGTTGGCTTCTTGTTTAGGCTTCTCAGCATTTCAATTC ATTTGAGTGCCTCTTCAGTGATAAAAACAGAACTGATAAGGAGAGCCAGTTTGCAGTTTGAGGAGGCAACAGTGAGTGAC TTGCTTTATCCTTCAAAAACATCTTCTGAACAGAACTATTATGATGTTGAGTTAGTTCAAGCAGTGCTGGAAACATTCTT GAAGCTTTGGAAAAGAATGTCCCCAGGTGCTGTGGACAACAGCTACTTTTTAAGATCAGTCAGAAATGTAGGCAGGCTCA TTGATTCCTATCTTCAAGTGGTTGCAAGAGATGATAACATGCAAGTTTCAAAGTTTGTCTCTCTTGCTGAAACTGTGCCG AGTATTGCTCGAGTAGATCACGATGATCTGTACAAGGCGATCGACATCTATCTTAAGGTGAATTAGCTACCATACCTACG AGACATGAATTTCTGCTGAAAGTGCTTTTAAGTCTTGCTAATGGAAATCCAAACATACTAACTTTGTCAAAACTTGTTTA ATATTACATTGTCTCCTGCTTGAATGCTAGAGAATTACACATGAACATTTCTGAGGACCGTAAGAGACTCTTAATGCATG TTTGGAAGATGATTCTTAGTGCATGTTTGGAAAACCTTCTATAATTAATTTGCAAGCCAAAATCAATTATGGGGAGAAGC TTATCGGAGTAGATTCTGGGTGTCAGAATTGATTATGCTAAATAAGCTAATATGCTATTAACTGTCACCAGAATGGATTA TGAAATCTAGAAGCTACTCACAAAAGTTTCTCCCTAGAATTGCTTATGACTTTAGAATCGATTGTAGAAGGGTTCCAAAC ATGAACATTAAACTAAACAAACATAACCAATTCAGTGGCAAGCTTTTACTCTCTGGTTATTTTGATGATGTGAATTGAGT AAAATGCTTGAACAGGTGCATCCTGACATGAGCAAGACAGACAAGAAGCGCTTGTGTGGGATTCTAGACTGCCAAAGACT GTCCCCAGAAGTGCGTTCCCATGCAGTGAAAAACGAGCTTCTGCCATTAAGAACTGTTGTGCAGCTCCTCTACTTTGAGC AAGAGAAAGGGTCTAAGGCAAATGCCAGTCAAAAACTGCCAAAACCACATGAGATACTTGCAGGAATAAAACATAGACCA GCCACAAGGGATGATGGCCAGAGCAAGCAATCTTTAGGCCAAGATAAAGAGTTCAATGGAGAAGTGACAAGAACTCAAAG ATTAGATAGTAAGTTGCCATTGGAACTAGAAAAAAAGATGGTTATCAGAGGAGACACTGAGAGGGAGTTAGATAAGGTGA GGAGAGCCAAAGATGAAAGTAGTTCAAGCTGCAAGGTGGAATTGGATCCTAAAAGAATCATAAGAAGGGCAAGAAGTAAA TCAGAACATAGCATGAAAAGGGAAGATAA
CDS sequence (LotjaGi4g1v0004700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTCATGAAACTTGGGACAAGGCCAGATACTTTCTACACTGAACAAGCTACCAGAACCCTGATATCAGATATAGC TGCAGACCTTGTGATACAAATCAATGATATTAATTATCTGCTACACAAGCTGCAGTTTGCGCTTCTTCCAAAATGCGGCC TCTTGCAGAGGCTTTGCTATGATTCTAGTGATTCTGAGAGTGTATCTGTAGAGCTTCATGATATACCTGGAGGAGAAGAT GCTTTTGAACTCTGTGCTAAGTTTTGCTATGGAATTTCAATCAAAATCAGTGCCCATAACTTTGTACCTACACTCAGTGC TGCCAAGTTTCTTAGAATGAACGACTCCATTGAGAGGGGAAACTTGGTAGGAAAACTTGAATCATTTTTCAATTCATGCA TTCTTGAAGGTTGGAAGGATTCCATTGCCACGCTTCAGAGTACTGCTACGTTACCAGAGTGGTCTGAGAATCTTGGTATT GTCAGAAAGTGCATTGATTCAATTATTGAGAAAATTCTCACACCCCCACCACAGGTCAAATGGTCCTTCACATACACCAG GCCTGGTTATACAAAAAAAGAGCATCATTCTGTCCCAAAGGATTGGTGGACTGAGGATGTTTCTGATCTTGACATAGATC TTTTCAGGTGCATAGTAATGGCTATTAGATCAACCTATGTTCTCCCACCACAGCTTATAGGTGAAGCTTTACATGTCTAT GCCTGCCGGTGGCTACCCGGCATCACAAAGCTTAAAACTTCAGGCAGTTCAGTGTCTCAAACAGAAGAGCCCAATAAAGA GAGAAACAGAAAAATTCTTGAAACCATTGTGAGCATGATTCCTGCAGATAGAGGGTCTGTTTCAGTTGGCTTCTTGTTTA GGCTTCTCAGCATTTCAATTCATTTGAGTGCCTCTTCAGTGATAAAAACAGAACTGATAAGGAGAGCCAGTTTGCAGTTT GAGGAGGCAACAGTGAGTGACTTGCTTTATCCTTCAAAAACATCTTCTGAACAGAACTATTATGATGTTGAGTTAGTTCA AGCAGTGCTGGAAACATTCTTGAAGCTTTGGAAAAGAATGTCCCCAGGTGCTGTGGACAACAGCTACTTTTTAAGATCAG TCAGAAATGTAGGCAGGCTCATTGATTCCTATCTTCAAGTGGTTGCAAGAGATGATAACATGCAAGTTTCAAAGTTTGTC TCTCTTGCTGAAACTGTGCCGAGTATTGCTCGAGTAGATCACGATGATCTGTACAAGGCGATCGACATCTATCTTAAGTA A
Protein sequence (LotjaGi4g1v0004700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFMKLGTRPDTFYTEQATRTLISDIAADLVIQINDINYLLHKLQFALLPKCGLLQRLCYDSSDSESVSVELHDIPGGED AFELCAKFCYGISIKISAHNFVPTLSAAKFLRMNDSIERGNLVGKLESFFNSCILEGWKDSIATLQSTATLPEWSENLGI VRKCIDSIIEKILTPPPQVKWSFTYTRPGYTKKEHHSVPKDWWTEDVSDLDIDLFRCIVMAIRSTYVLPPQLIGEALHVY ACRWLPGITKLKTSGSSVSQTEEPNKERNRKILETIVSMIPADRGSVSVGFLFRLLSISIHLSASSVIKTELIRRASLQF EEATVSDLLYPSKTSSEQNYYDVELVQAVLETFLKLWKRMSPGAVDNSYFLRSVRNVGRLIDSYLQVVARDDNMQVSKFV SLAETVPSIARVDHDDLYKAIDIYLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 426 | 426 | 1.2E-242 | – | |
| PANTHER | 1 | 426 | 426 | 1.2E-242 | ||
| SUPERFAMILY | 12 | 116 | 105 | 8.63E-10 | ||
| CDD | 20 | 125 | 106 | 2.32564E-33 | – | |
| ProSiteProfiles | 201 | 426 | 226 | 62.831 | ||
| Pfam | 201 | 426 | 226 | 1.3E-70 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0004700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…