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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0004700 |
| Transcript ID | LotjaGi4g1v0004700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT5G47800.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9FIK1|Y5780_ARATH BTB/POZ domain-containing protein At5g47800; TrEMBL-Plants: tr|I1MQW4|I1MQW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0004700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:783053..785881) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGTTCATGAAACTTGGGACAAGGCCAGATACTTTCTACACTGAACAAGCTACCAGGTATTGGCAACAACCCCTTTG TTAAAAATATGTATACATCTTTTTACAAATTAACATGTCTTCTGATAATGCAGAACCCTGATATCAGATATAGCTGCAGA CCTTGTGATACAAATCAATGATATTAATTATCTGCTACACAAGGTATTGGAATTATAGAATGAAAGTGTGGTGTGTGTGA AAATAAAAACCAAAACTTAATCTTGGTTCATCTATAATTCTGCTCTTTCTAACTGCAGTTTGCGCTTCTTCCAAAATGCG GCCTCTTGCAGAGGCTTTGCTATGATTCTAGTGATTCTGAGAGTGTATCTGTAGAGCTTCATGATATACCTGGAGGAGAA GATGCTTTTGAACTCTGTGCTAAGTTTTGCTATGGAATTTCAATCAAAATCAGTGCCCATAACTTTGTACCTACACTCAG TGCTGCCAAGTTTCTTAGAATGAACGACTCCATTGAGAGGGGAAACTTGGTAGGAAAACTTGAATCATTTTTCAATTCAT GCATTCTTGAAGGTTGGAAGGATTCCATTGCCACGCTTCAGAGTACTGCTACGTTACCAGAGTGGTCTGAGAATCTTGGT ATTGTCAGAAAGTGCATTGATTCAATTATTGAGAAAATTCTCACACCCCCACCACAGGTCAAGAACTCAGATCCATCAAC TCTTCCAAGTTTCTGTGGTTGTTGCCATGAACCAAAGCTTAAGCTGTAGGGTAAAGGTTTTATATTATACTTATAATACG CCCCCTCATGCCAGAGCCCTTTGGGCTTGAAGTGTGGACAATGCGTGCTCACTTGACTTATGCTGAAATTCAACTTTTTT TTCATTAGAATGAGGCAACAAGGATTGAACTCTAGACCACTTAGTGATAGAGACTCAATACTATATCATGAACCAACTAT TCCAAAAGTTTAAGCTATAGGGTGAAGAGACATGAATGCTTTTATATTATATTTCTGAGAATTGTTACTTCTTAATTTGA ACATTTTTGCTAATAAATAATGGTTCTGTGCAGGTCAAATGGTCCTTCACATACACCAGGCCTGGTTATACAAAAAAAGA GCATCATTCTGTCCCAAAGGATTGGTGGACTGAGGATGTTTCTGATCTTGACATAGATCTTTTCAGGTGCATAGTAATGG CTATTAGATCAACCTATGTTCTCCCACCACAGCTTATAGGTGAAGCTTTACATGTCTATGCCTGCCGGTGGCTACCCGGC ATCACAAAGCTTAAAACTTCAGGCAGTTCAGTGTCTCAAACAGAAGAGCCCAATAAAGAGAGAAACAGAAAAATTCTTGA AACCATTGTGAGCATGATTCCTGCAGATAGAGGGTCTGTTTCAGTTGGCTTCTTGTTTAGGCTTCTCAGCATTTCAATTC ATTTGAGTGCCTCTTCAGTGATAAAAACAGAACTGATAAGGAGAGCCAGTTTGCAGTTTGAGGAGGCAACAGTGAGTGAC TTGCTTTATCCTTCAAAAACATCTTCTGAACAGAACTATTATGATGTTGAGTTAGTTCAAGCAGTGCTGGAAACATTCTT GAAGCTTTGGAAAAGAATGTCCCCAGGTGCTGTGGACAACAGCTACTTTTTAAGATCAGTCAGAAATGTAGGCAGGCTCA TTGATTCCTATCTTCAAGTGGTTGCAAGAGATGATAACATGCAAGTTTCAAAGTTTGTCTCTCTTGCTGAAACTGTGCCG AGTATTGCTCGAGTAGATCACGATGATCTGTACAAGGCGATCGACATCTATCTTAAGGTGAATTAGCTACCATACCTACG AGACATGAATTTCTGCTGAAAGTGCTTTTAAGTCTTGCTAATGGAAATCCAAACATACTAACTTTGTCAAAACTTGTTTA ATATTACATTGTCTCCTGCTTGAATGCTAGAGAATTACACATGAACATTTCTGAGGACCGTAAGAGACTCTTAATGCATG TTTGGAAGATGATTCTTAGTGCATGTTTGGAAAACCTTCTATAATTAATTTGCAAGCCAAAATCAATTATGGGGAGAAGC TTATCGGAGTAGATTCTGGGTGTCAGAATTGATTATGCTAAATAAGCTAATATGCTATTAACTGTCACCAGAATGGATTA TGAAATCTAGAAGCTACTCACAAAAGTTTCTCCCTAGAATTGCTTATGACTTTAGAATCGATTGTAGAAGGGTTCCAAAC ATGAACATTAAACTAAACAAACATAACCAATTCAGTGGCAAGCTTTTACTCTCTGGTTATTTTGATGATGTGAATTGAGT AAAATGCTTGAACAGGTGCATCCTGACATGAGCAAGACAGACAAGAAGCGCTTGTGTGGGATTCTAGACTGCCAAAGACT GTCCCCAGAAGTGCGTTCCCATGCAGTGAAAAACGAGCTTCTGCCATTAAGAACTGTTGTGCAGCTCCTCTACTTTGAGC AAGAGAAAGGGTCTAAGGCAAATGCCAGTCAAAAACTGCCAAAACCACATGAGATACTTGCAGGAATAAAACATAGACCA GCCACAAGGGATGATGGCCAGAGCAAGCAATCTTTAGGCCAAGATAAAGAGTTCAATGGAGAAGTGACAAGAACTCAAAG ATTAGATAGTAAGTTGCCATTGGAACTAGAAAAAAAGATGGTTATCAGAGGAGACACTGAGAGGGAGTTAGATAAGGTGA GGAGAGCCAAAGATGAAAGTAGTTCAAGCTGCAAGGTGGAATTGGATCCTAAAAGAATCATAAGAAGGGCAAGAAGTAAA TCAGAACATAGCATGAAAAGGGAAGATAA
CDS sequence (LotjaGi4g1v0004700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTCATGAAACTTGGGACAAGGCCAGATACTTTCTACACTGAACAAGCTACCAGAACCCTGATATCAGATATAGC TGCAGACCTTGTGATACAAATCAATGATATTAATTATCTGCTACACAAGTTTGCGCTTCTTCCAAAATGCGGCCTCTTGC AGAGGCTTTGCTATGATTCTAGTGATTCTGAGAGTGTATCTGTAGAGCTTCATGATATACCTGGAGGAGAAGATGCTTTT GAACTCTGTGCTAAGTTTTGCTATGGAATTTCAATCAAAATCAGTGCCCATAACTTTGTACCTACACTCAGTGCTGCCAA GTTTCTTAGAATGAACGACTCCATTGAGAGGGGAAACTTGGTAGGAAAACTTGAATCATTTTTCAATTCATGCATTCTTG AAGGTTGGAAGGATTCCATTGCCACGCTTCAGAGTACTGCTACGTTACCAGAGTGGTCTGAGAATCTTGGTATTGTCAGA AAGTGCATTGATTCAATTATTGAGAAAATTCTCACACCCCCACCACAGGTCAAATGGTCCTTCACATACACCAGGCCTGG TTATACAAAAAAAGAGCATCATTCTGTCCCAAAGGATTGGTGGACTGAGGATGTTTCTGATCTTGACATAGATCTTTTCA GGTGCATAGTAATGGCTATTAGATCAACCTATGTTCTCCCACCACAGCTTATAGGTGAAGCTTTACATGTCTATGCCTGC CGGTGGCTACCCGGCATCACAAAGCTTAAAACTTCAGGCAGTTCAGTGTCTCAAACAGAAGAGCCCAATAAAGAGAGAAA CAGAAAAATTCTTGAAACCATTGTGAGCATGATTCCTGCAGATAGAGGGTCTGTTTCAGTTGGCTTCTTGTTTAGGCTTC TCAGCATTTCAATTCATTTGAGTGCCTCTTCAGTGATAAAAACAGAACTGATAAGGAGAGCCAGTTTGCAGTTTGAGGAG GCAACAGTGAGTGACTTGCTTTATCCTTCAAAAACATCTTCTGAACAGAACTATTATGATGTTGAGTTAGTTCAAGCAGT GCTGGAAACATTCTTGAAGCTTTGGAAAAGAATGTCCCCAGGTGCTGTGGACAACAGCTACTTTTTAAGATCAGTCAGAA ATGTAGGCAGGCTCATTGATTCCTATCTTCAAGTGGTTGCAAGAGATGATAACATGCAAGTTTCAAAGTTTGTCTCTCTT GCTGAAACTGTGCCGAGTATTGCTCGAGTAGATCACGATGATCTGTACAAGGCGATCGACATCTATCTTAAGTAA
Protein sequence (LotjaGi4g1v0004700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFMKLGTRPDTFYTEQATRTLISDIAADLVIQINDINYLLHKFALLPKCGLLQRLCYDSSDSESVSVELHDIPGGEDAF ELCAKFCYGISIKISAHNFVPTLSAAKFLRMNDSIERGNLVGKLESFFNSCILEGWKDSIATLQSTATLPEWSENLGIVR KCIDSIIEKILTPPPQVKWSFTYTRPGYTKKEHHSVPKDWWTEDVSDLDIDLFRCIVMAIRSTYVLPPQLIGEALHVYAC RWLPGITKLKTSGSSVSQTEEPNKERNRKILETIVSMIPADRGSVSVGFLFRLLSISIHLSASSVIKTELIRRASLQFEE ATVSDLLYPSKTSSEQNYYDVELVQAVLETFLKLWKRMSPGAVDNSYFLRSVRNVGRLIDSYLQVVARDDNMQVSKFVSL AETVPSIARVDHDDLYKAIDIYLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 424 | 424 | 2.3E-244 | – | |
| PANTHER | 1 | 424 | 424 | 2.3E-244 | ||
| Gene3D | 4 | 153 | 150 | 3.7E-7 | – | |
| SUPERFAMILY | 12 | 114 | 103 | 1.41E-12 | ||
| CDD | 20 | 123 | 104 | 3.20064E-35 | – | |
| Pfam | 199 | 424 | 226 | 1.3E-70 | ||
| ProSiteProfiles | 199 | 424 | 226 | 62.831 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0004700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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