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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0008300 |
| Transcript ID | LotjaGi4g1v0008300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tonoplast dicarboxylate transporter-like protein; TAIR: AT5G47560.1 tonoplast dicarboxylate transporter; Swiss-Prot: sp|Q8LG88|TDT_ARATH Tonoplast dicarboxylate transporter; TrEMBL-Plants: tr|G7JLM6|G7JLM6_MEDTR Tonoplast dicarboxylate transporter-like protein; Found in the gene: LotjaGi4g1v0008300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1134115..1134793) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGCTGTGCTATTGTTCATAATCCCAAACATGAAAAAGGAAGGGGAGAAGCTAATGGACTGGAATGAATGCAAGAA GTTACCATGGAGCCTCATTTTGCTACTTGGAGCTGGGTTTGCTATAGCTGATGGAGTCCAATCTAGTGGCCTAGCAGATG TGCTTTCCAGAGCCTTAGATTTCTTAGATGATGCTCCATACCTAGCCATTGCCCCTGCAGTTAGTCTCATGAGTAGCATC ATAACTGAGTTTATCACCTCCAATGATGCCACTGCCACCCTGATTATCCCACTCTTATATCACATAGCAAGGACCATGCG CGTGCATCCTCTTCTTCTTATGATTCCCGGAGCAATCGCGACCGAATTCGCTTTCTTGCTTCCAACTTCAACTCCTTCCA ATGTAGTTGGATTTGCCACTGGCCATATTGAAATCCAGGACACGCTCAAAGTTGGTGTGCCTCTAAAGGTTGCTGGGATA GCTTTGCTCTCATTCTTGATGCCAACTCTAGGTAAATTATCGTTACAGAATCCTCTCATGTTAAAACTATGCTAAAATTT TGTGTATATCTTTATTTTTATATGTGTGTTTGGGTAAACAATTTTATTAAGTACTTATTCATAAGTTAACTTGAGAATTT TAATGAAATAAGCGGAAAATAGGTTATGGATAAGGATAA
CDS sequence (LotjaGi4g1v0008300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTGTGCTATTGTTCATAATCCCAAACATGAAAAAGGAAGGGGAGAAGCTAATGGACTGGAATGAATGCAAGAA GTTACCATGGAGCCTCATTTTGCTACTTGGAGCTGGGTTTGCTATAGCTGATGGAGTCCAATCTAGTGGCCTAGCAGATG TGCTTTCCAGAGCCTTAGATTTCTTAGATGATGCTCCATACCTAGCCATTGCCCCTGCAGTTAGTCTCATGAGTAGCATC ATAACTGAGTTTATCACCTCCAATGATGCCACTGCCACCCTGATTATCCCACTCTTATATCACATAGCAAGGACCATGCG CGTGCATCCTCTTCTTCTTATGATTCCCGGAGCAATCGCGACCGAATTCGCTTTCTTGCTTCCAACTTCAACTCCTTCCA ATGTAGTTGGATTTGCCACTGGCCATATTGAAATCCAGGACACGCTCAAAGTTGGTGTGCCTCTAAAGGTTGCTGGGATA GCTTTGCTCTCATTCTTGATGCCAACTCTAGGTAAATTATCGTTACAGAATCCTCTCATGTTAAAACTATGCTAA
Protein sequence (LotjaGi4g1v0008300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAVLLFIIPNMKKEGEKLMDWNECKKLPWSLILLLGAGFAIADGVQSSGLADVLSRALDFLDDAPYLAIAPAVSLMSSI ITEFITSNDATATLIIPLLYHIARTMRVHPLLLMIPGAIATEFAFLLPTSTPSNVVGFATGHIEIQDTLKVGVPLKVAGI ALLSFLMPTLGKLSLQNPLMLKLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 172 | 172 | 4.9E-71 | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 172 | 172 | 4.9E-71 | – | |
| Phobius | 1 | 43 | 43 | - | – | |
| Pfam | 3 | 166 | 164 | 1.4E-21 | ||
| Phobius | 28 | 38 | 11 | - | – | |
| Phobius | 39 | 43 | 5 | - | – | |
| Phobius | 44 | 66 | 23 | - | – | |
| Phobius | 67 | 87 | 21 | - | – | |
| Phobius | 88 | 107 | 20 | - | – | |
| Phobius | 108 | 127 | 20 | - | – | |
| Phobius | 128 | 156 | 29 | - | – | |
| Phobius | 157 | 175 | 19 | - | – | |
| Phobius | 176 | 184 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0008300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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