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LotjaGi4g1v0010800.1

Overview

Field Value
Gene ID LotjaGi4g1v0010800
Transcript ID LotjaGi4g1v0010800.1
Lotus japonicus genome version Gifu v1.2
Description UBX domain-containing protein, putative; TAIR: AT4G04210.1 plant UBX domain containing protein 4; Swiss-Prot: sp|Q8RWU7|PUX4_ARATH Plant UBX domain-containing protein 4; TrEMBL-Plants: tr|I3SVF6|I3SVF6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0010800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:1363856..1367179) extracted from Lotus japonicus Gifu genome v1.2.

GCCACCTGGAATGGAATGATTCTGTTGTTGTGGCACGCGCCACTGATGAGCGTGGTGGTGTGTTGATTGATAAGAGCAAG AGATTCGTCGAGATAGATAGATAGATAGATAGATAGATACAAGGTAGTAGTACTAGTAGATAGATTCTACTCTCTCTCTT CTCTTCTCTCTTGTCTCTCTGTAACAACCAAATTCAATTCAATGGCGTCGAAGGAGAAGAAACCTGCGTCATCGAAACCC TCCACCAGTCGAGCTGACAGGATCCGCACTCTCTCCGATCTCAACCGCCCATCCGCTGACTCTGACACCGACTCCGATGA CCCTCAGGAGTATTACACCGGCGGCGAAAAGAGGTTCTTATGTTACCCACCCTCTCCCCAAATAATAATCATAATTCAAT CTAAAATCTTTCTCTCTTAGGGTTTAGGGGCATTTGTGTAACATGCACCAAACAATTCTGATCATAACGACTTATCTAGA GGTTTATGTTATCACTTCTAGCATTGTTTACTGGACTGGACTGTTTAGCTGCTTTATGTTTATAAGATTGGCACTATATA TCTTACATATATTTATTTTCTATTAGGGTGTGTCTGTGAGTCGAGTTTTGAAGGGGATGGAAGGGAAGAGGGAGACTTAT GAGAAGTCCTCCCTTTGTTCTAAGCACTTCTTAATGAACACTCACTATCTACTTCCTTGATTAGATATCTTTTGTATTTT GTGTGTCAAATCTTGTATCCAAAAGGTGTATAATTAAATTGGAGGATTTGTACATCTGTAGTCATGCTTGCTAAACTTTT AAATGTAATATATTAGGGTTCCAGACATTAGTAATATGCATCTTCTAGATATCTTCAATTGCTTTCATATTTGGGATTTT TCAATCAGATTTAACGAATGTACATTATATCTCCAGTGGAATGCTTGTCCAGGATCCTTCAAAAGGCACTGATGTCGATG CAATTTTCAATCAAGCAAGACAGCTGGGAGCTATAGAAAGGCCAATTGATCAACTTCAGGAGCCACCAAGGTCGACCAGT TTTACTGGAACTGGCAGGTTACTCTCGGGTGAAAGCATACAATCTGCCCCTCAGCAACCTGAGTCTGTTGTTCATAACAT TGTTTTTTGGACTAATGGTTTCACTGTAAATGATGGACCTTTGAGGAGCTTGGATGATCCTGAAAATGCCTCATTTTTAG AGGTAATTGTAACCAAAGTTCTAACTCAGATATGGATGAAGTGGGAAGATATTTGAAGCAATGAGGTTAATATGGTCCAG AATGGGAAAAAAAAATCCCTCAGTGAAGATTGAAATTTTTCTGAGCATTTTTCATGGAATAATGATTTCCAAAGTTTTTG CTTTGAATACTACTTACAGCAACCTGTCATTAGAATTTTCTTTTCTCTGAAATCCTTCATATAATCTTGTTACTTATTCT TATATGTTTTTAATCTCATCCTTTGACTTTGTTCGAATGTCTCAGAAATCTGTTGGGCTAGTAATACTATTACTTTATTT TTTGTTACATCAATGATTTCATTGTGTTTATTGATATTTGTTATGTTTGAATGCAGAGCATAAAAAAATCCGAGTGTCCA AAAGAGCTTGAACCTGCAGATAGGAGGTCATCTGTTAATGTTAACCTCATAAGGAGGAATGAGAAGTATCATGTGAGTTT TCTGTTTGAGTTCTTGTTATGCGTCTGTCTTCCATCGGTATTAGTGTTTTTGAAGAATTTCATCTTGAAATGCATTCCAC GTGATAGAAACCTGGCATCTTATTTGAAAGAAGTAGGTATAAATCCCAATTACTATCGTTAAACATTGAAAATTTTCGAG GGTCTACAAACCTCCCTGTCCAAAGATCCTAATTCTCAATCTAATGAATGGCTAGATACATCTCCCTCTCTACATCCTCT CTTATTTATAGGCTACGGGCCTTATTTGTTCAAACCTTCCCAGTACAACTACCTAACTAACCAGCTCTCTCATAATAGAC ACTTAACACTATCTGATATCTGATAGTTTCCTTTGCTTTTCCCGGTAGAAGTGTATTGAAGTTTCTTTTTGCCGGTAGAA GTGTATTTAAGTTTCTTATTTGAAATGCAATTTTTTATGCATGATAGTTATTTTTAATCGTGTCTCCAAGTAAAATTTAG AAGTACATTTTGTCACACTTGCAGGAACCCGAAAAGCCCCATGTTCCATTTCAGGGTGTGGGAAGAACTCTAGGAAGCAG CTCTGCTTCAGTGGCACCTCAGCCAACTGCCTCCTCAACCTCAACTTCTTTCAACACTTCTCCAACCCCTTCTGCTGGCC TGGTGGTAGACCAGTCATTGCCATCAACCCAAATACAGCTTAGGTTAGCTGATGGAACCCGCTTGATATCAAATTTTAAT TATCACCATACAGTCAGCGACATTCGTGCCTTCATTGATGCTTCTAGACCTGAGGGTGCAAGGAATTATCAACTTCAGAT AATGGGTTTTCCCCCAAAGCTTCTCTCAGATGAAACTCAGACCATCGAGCAGGCGGGGCTAGCAAATTCAGTTGTCATCC AGAAATTCTAAAAAGCTGCAGAAAGATTGCTGCTTTGGGTGTTTACTAGCTTAAATTAAACACTGTATTAAAGTGAATCA ATTTTCCCTGCTTAAAACCTGGTGGGGTTTTCTATCATGACAGTTTTATTGAGTTGTTATTAGCAAAACAAAAAAGGAAT TGGGGTGGGGGTTTATATTTTATTTTCTCTGAAGTTTTAATCAAAGGTTTAAATTGCTTTAGGTTCAGTTGTATCTTATA TGGCTTAGTGTGACCGATTGAGTGCAAAATGAACAGACTTTCTCAATCCTAAAAAAAATTTTATTCAGTTTGAAGTGTGT GCTAACGTTCACTACTATCAACAAATATCAAAACATGGCATTAGCTTTGAGCCCAATTCTTGTGTTTAGAGCAGGGTATG ACAGTTTGCTTTTCTTCCTACTTATTGTTTTGGACTGAAATTGAATGAAATTGGACACAGTTGAATTGTTGGATATTCCA TTTCATTCAGTCTAAACATGCGTATCTTAATTCACGGTAATGTCAAAATCTATTCCATGTAGAGATTGTAGAGGTAAATT TGCTCATTGTGGAACAGATTTAACCAGTGTCATACTGTGGAAGAGCATCAAATTGCCACTGTCATATATTGTACCAACTG AAAGGATCTTTGGGGAAATATCTCAAAGGCATAACTAGTGACCTTCTGTTAAGGGAAAGCTAAATATGCTTATGAGAAAA AGTAAGATTTGCTTTATGTTGGAAACTTGTGAACCAAATACCAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0010800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTCGAAGGAGAAGAAACCTGCGTCATCGAAACCCTCCACCAGTCGAGCTGACAGGATCCGCACTCTCTCCGATCT CAACCGCCCATCCGCTGACTCTGACACCGACTCCGATGACCCTCAGGAGTATTACACCGGCGGCGAAAAGAGTGGAATGC TTGTCCAGGATCCTTCAAAAGGCACTGATGTCGATGCAATTTTCAATCAAGCAAGACAGCTGGGAGCTATAGAAAGGCCA ATTGATCAACTTCAGGAGCCACCAAGGTCGACCAGTTTTACTGGAACTGGCAGGTTACTCTCGGGTGAAAGCATACAATC TGCCCCTCAGCAACCTGAGTCTGTTGTTCATAACATTGTTTTTTGGACTAATGGTTTCACTGTAAATGATGGACCTTTGA GGAGCTTGGATGATCCTGAAAATGCCTCATTTTTAGAGAGCATAAAAAAATCCGAGTGTCCAAAAGAGCTTGAACCTGCA GATAGGAGGTCATCTGTTAATGTTAACCTCATAAGGAGGAATGAGAAGTATCATGAACCCGAAAAGCCCCATGTTCCATT TCAGGGTGTGGGAAGAACTCTAGGAAGCAGCTCTGCTTCAGTGGCACCTCAGCCAACTGCCTCCTCAACCTCAACTTCTT TCAACACTTCTCCAACCCCTTCTGCTGGCCTGGTGGTAGACCAGTCATTGCCATCAACCCAAATACAGCTTAGGTTAGCT GATGGAACCCGCTTGATATCAAATTTTAATTATCACCATACAGTCAGCGACATTCGTGCCTTCATTGATGCTTCTAGACC TGAGGGTGCAAGGAATTATCAACTTCAGATAATGGGTTTTCCCCCAAAGCTTCTCTCAGATGAAACTCAGACCATCGAGC AGGCGGGGCTAGCAAATTCAGTTGTCATCCAGAAATTCTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0010800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASKEKKPASSKPSTSRADRIRTLSDLNRPSADSDTDSDDPQEYYTGGEKSGMLVQDPSKGTDVDAIFNQARQLGAIERP IDQLQEPPRSTSFTGTGRLLSGESIQSAPQQPESVVHNIVFWTNGFTVNDGPLRSLDDPENASFLESIKKSECPKELEPA DRRSSVNVNLIRRNEKYHEPEKPHVPFQGVGRTLGSSSASVAPQPTASSTSTSFNTSPTPSAGLVVDQSLPSTQIQLRLA DGTRLISNFNYHHTVSDIRAFIDASRPEGARNYQLQIMGFPPKLLSDETQTIEQAGLANSVVIQKF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 63 63 - –
PANTHER
PTHR23333
2 306 305 8.7E-141 –
PANTHER
PTHR23333:SF28
2 306 305 8.7E-141 –
MobiDBLite
mobidb-lite
22 36 15 - –
MobiDBLite
mobidb-lite
78 99 22 - –
MobiDBLite
mobidb-lite
85 99 15 - –
SUPERFAMILY
SSF102848
106 201 96 1.23E-31
IPR036241
SMART
SM00553
111 204 94 2.5E-45
IPR012989
Gene3D
G3DSA:3.30.420.210
114 176 63 4.4E-23
IPR036241
ProSiteProfiles
PS51399
114 178 65 33.886
IPR012989
Pfam
PF08059
119 192 74 1.5E-27
IPR012989
MobiDBLite
mobidb-lite
176 220 45 - –
Gene3D
G3DSA:3.10.20.90
178 306 129 2.4E-39 –
SUPERFAMILY
SSF54236
187 304 118 3.1E-24
IPR029071
MobiDBLite
mobidb-lite
191 220 30 - –
SMART
SM00166
227 306 80 0.0045
IPR001012
ProSiteProfiles
PS50033
228 305 78 18.06
IPR001012
Pfam
PF00789
232 305 74 6.0E-16
IPR001012
CDD
cd01770
234 305 72 2.07101E-36 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0010800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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