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LotjaGi4g1v0018800.1

Overview

Field Value
Gene ID LotjaGi4g1v0018800
Transcript ID LotjaGi4g1v0018800.1
Lotus japonicus genome version Gifu v1.2
Description Peptidylprolyl isomerase; TAIR: AT5G45680.1 FK506-binding protein 13; Swiss-Prot: sp|Q9SCY2|FKB13_ARATH Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic; TrEMBL-Plants: tr|A0A072UQ15|A0A072UQ15_MEDTR Peptidylprolyl isomerase; Found in the gene: LotjaGi4g1v0018800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:2373032..2377202) extracted from Lotus japonicus Gifu genome v1.2.

AGGGAATATAACAGAATCGGGTTCGTGGTTGATATATGGATCCTCATGGTACAATTTGAACCTTAATAATTGGCACCTAT CCATATCCTGGATTGGGTGAAGATGAGTTCACTAGCACCATTTTCAGCAACTGGAACATGCCTCACTTCCCTGCATCCCC TTAACAATTCATCACCGCCAAAACCACCACCTCTGACTCTGACTCCTATAAAATGTGCTGCTACCCAACTCCAACCGCCA GTAACAGCTCAAAAAGAGAGCCAGTTCAAGAGAAGAGACGCTATAGGCCTTGCCTTGAGTGTTGGCATTCTTCAAGCTTT CTTTCCACCAAAACCAGCTTCAGCAGCAGTGGAAGCACCACCGTGTGAATTAACAGCAGCTCCTTCTGGCCTCGCTTTCT GTGATAAGCTTGTTGGCACGGGTCCTCAAGCTGTTAAGGGACAACTCATCAAGGTAAAATAACATTGTACTATTATACTT AGCATTCATGGTAGCATTGCTCATTCTAATGTACTCTTGTTTGGCATTGAGCAATGTTTGTTCTCCCAGGCACATTATGT AGGGAGATTGGAGAATGGGAAAATTTTCGACAGCAGCTATAATCGTGGCCAGCCACTCACATTTCGCGTCGGTGTTGGAG AGGTATGTGATGACAAACGCCTTAGTGTCTGTTTGGATACAAGTTAAACCTAAAGTGATAGTATTTTTTTAATCCAGAGA TTTTTGTTCACTAATGTATTGAAGTGAGTGCTAGTGTCCATTTGCATTCGTGTCCATGCCTATCTAAACATAGGCGCTTA TACTTTCACACTTTATCAGCAGTGATATGCAACACAACCCAAATAACAATTTGTGTTTTGTCTTTTTGTCTACTTTGTGC ATTTATCATGTGAAGAGAGGTGGAGGAAGGTCAAAAAGAACATTGGAACACATTGTTAAAAACGATCTCATTGTCAATAA TATCCCACAAAATTTTATTTTTTTATCAAGCGGAGGTGTTGCATTGTGTGATTCATATAGCCAACCACACTTAGTAAGAT AAGGCTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCATTTTAACATTGT CTTTTGAGGACTTGGCCTGAGATAAGTTATAGAACACCATGTACAAGATTGGCATTGTAGCATTTTGATTGAGGAGTGGC ATTACAAGCATTCTCCTTTCTATTGATAAAACAAGAAAGTAGTGAATAAAGCTCTTTTGGGGTTATATTAATGAACTCAG AAAAGGCATCCACTTCTATTTAATAAGTACTTCACTGTAAGCCACATATGAATTCTCTGCTATTAGAATTGCACGCAATT ATTGCAGTCAGCCACTTTGAGTCATTGGATGAAGATCAGATGACTGTCGAATTTGAGCGGGTCTGATTTTCATCCAACAA CTCAAAATGGTTGGCTACAATGTCTGCATGCACTCTTGAGTGCAATCAATCCAAATTCATGAATAATACACTTCTGCACC GTACAGCTATGCTCAGGATTAAAATTTGTGCATGAATTATGATAATAGGTCATCAAAGGATGGGATGAAGGCATTATAGG AGGTGATGGAATTCCACCCATGCTTGCAGGTACTCTTTCTTCATCATTCTAATTTCTAAACTCATTTTTATTTAACATCT TAAGGCAAGGTAAGAATATTTACTTACTCTTTTGTAACAACATAGGAGGCAAACGTACACTGAAGCTTCCTCCAGAACTT GCATATGGTTCAAGAGGAGCTGGTTGTAGAGGAGGTAAGTACTTTTTTTGTGGTACCAACCATTTTACTTTGCCATATTA TTGCAAATTTATACATATGTTTCGTGTGAAAAAGAAAGATAAAATTTTGTTTGCTCTTGGTTATGAATATGATGCAGTAT GTGGAAGTAGTTCTTATAAAGATAATGATAACGTTTTATCTTTATTTGGTGTTAATAGTGTCACTCTAGGATGAGGGACA GGACTGTTGGTTACTGTATTCTAGGATCTAATTTTCAATATATGGATGTTGATTGTGATAGTTGTGGCTCTAATTGAATT TGCGGTGAGTGACATAACAATGCAGAATAGGAGTAGAGAATGCACTGTGTGGGAGCTCTATGTCTCTCTGTTTTTCCCCC TTTTCACTTAGAAAAGCTGGACAATAAATATGAAAAACTGTTCATTCATTATGAGGAAAAAGAATACAAATGTTAGGACT TAGGAGACACGTAAAGTTTTTATTCTATAAAATCTTTACTTAGTATTACTAGCTAGTACTGACAGATCTCTTTAAACCTA TATGGACTTGTTAATATAAAATTTGAATGACCTATTTCTCAATTATATTGAGAAATTGGAATCCTTAAATAAAGTTCCTT GGGAAAAGACATCTGAGAAAATCATGTCAAGACATACTCATGCTTTGATCATAAAAACATGGAGACTGTATGTCTGTAGA ACAATAGTGAAACACTGAAACATATGTACAGCAAATTCTGTAGAGAAGCGTGAACCAAATAAAGCATGAAAATCTGCAAT AAGCTAGAAATGTTTTATTTTTATTAATGAATCTAAATTAGTCATGTTCCCATAGATGCTTAGCAGTTGACTGCAATACT AGTAATCTAAAGAACTATGCATTGCGTTTTACAACTTCTTTTCTCATGAATTTTCCTTTTACCATTTTTCTTAGCCAAGC AGAAATTTATACTTAGTTTGATGCAGGTTCGTGTGTCATTCCTCCTGATTCGGTACTCTTATTTGATGTGGAGTTTGTTA GCAAAGTATGATTTACAAAGCCATGCGCAGCCAAATTACTTTCCTTTATCTTGAGAATGGAGCTTAGATTTGGATTAGGT TCCCTGCAGGAAGGGATACACTATATCCATGCAATCACACAATCTGAGTCATCCGGTCATGATCGTTCGGTTCATATATT TCATCAAGATCGGACCATAGATATAAGTTTAAAATCTGAGCTGGCCGATCTTGATCCGATCGCTCAGATTGCGTTATTGC GTGAATGTAGAGATTCCTGACAAATCCATTTCCCTTAGATTTATATTGTTTTCCCTCTGTTGGTTATATATTTGATGACT GTGATATTACCTATATTACACGTAAGAACAGTTTCAGCGTTCTTATATCTAAAGTTGAACAAGAGAGTAAAGAATTACCT GATAAATTCATGACTGATTAGTTACAATAAAGATTGATGAACCACTCTTTTCGGTGTAGACACTAAAATATATGAAGAGA AATAAATGTGATATGTGATATGTGATGTGACAATAAGAGAACGATAAAGAGAGAAAAAAATGTGTATATGAGTGTTGTTC TGTTTTGTCACTTTGTGGTACACGTGGCTGGATTAGTTAACATGTTGTGTATAAACTCTGCAGTCATGACTTGATAAACA TAGAAATTGGACCAAAAGTTGAACTGTTATTAGCTCCAGTAGAGAAGCACTTTAAGACCACTCCTCCAGTGTTGAAATGA CCCAATAAAGAAAACATAAAAGGAAAGCTGTTAAAGCACTTTGAGTGCTTTTTGCAAAGCAGGAAACCAGTTCTTTCATC TCTTTTTATTGTTTGACAAACATCTCAAGAGCCTTAGCCTTAAGAAGCAGAGAAGTTGAGTCCTTGTGATGAATTAAAGT GAGACAAGACCCCTACAACCAAAAGGGAAGGGTAAATCCTGTTCTGGTGCCTCCATATAGCAATATAGACAATACTGTTC AAAATTAGTTCACCAAAGAACCGTGGTGTTTTTACTTGTTATAAAAAAGGTAACATTTAGGCATTTAGCATATGTTGTTT AACATGAGTTCTTTATGTGTTAACATCAATTTGTAAAAAAATTCTTTTAATTTTTAAACCAGATTTTTCTGAGTGTATGT TTTGATACATGAAAGAAAACCACGTGAGTCAAAATCATGATGAACAGAAACAACTTCTCTTACCTTTCGTGGTTATTCAT CGTGATTTTTTAGAATGTATGTTCATTTTGTCCATAATAGACAAACTTATAAAGTATCAAAGTTTGCATGGGATGTCGTC TCAACACAACTTTGACAAAATGCATACAATGTGGGATGCATTTTATCACACAAATGTTGTAAAGGTAGAATTCATGGTGA TTATCACTTCG 

CDS sequence (LotjaGi4g1v0018800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTTCACTAGCACCATTTTCAGCAACTGGAACATGCCTCACTTCCCTGCATCCCCTTAACAATTCATCACCGCCAAA ACCACCACCTCTGACTCTGACTCCTATAAAATGTGCTGCTACCCAACTCCAACCGCCAGTAACAGCTCAAAAAGAGAGCC AGTTCAAGAGAAGAGACGCTATAGGCCTTGCCTTGAGTGTTGGCATTCTTCAAGCTTTCTTTCCACCAAAACCAGCTTCA GCAGCAGTGGAAGCACCACCGTGTGAATTAACAGCAGCTCCTTCTGGCCTCGCTTTCTGTGATAAGCTTGTTGGCACGGG TCCTCAAGCTGTTAAGGGACAACTCATCAAGGCACATTATGTAGGGAGATTGGAGAATGGGAAAATTTTCGACAGCAGCT ATAATCGTGGCCAGCCACTCACATTTCGCGTCGGTGTTGGAGAGGTCATCAAAGGATGGGATGAAGGCATTATAGGAGGT GATGGAATTCCACCCATGCTTGCAGGAGGCAAACGTACACTGAAGCTTCCTCCAGAACTTGCATATGGTTCAAGAGGAGC TGGTTGTAGAGGAGGTTCGTGTGTCATTCCTCCTGATTCGGTACTCTTATTTGATGTGGAGTTTGTTAGCAAAGTATGA 

Protein sequence (LotjaGi4g1v0018800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSLAPFSATGTCLTSLHPLNNSSPPKPPPLTLTPIKCAATQLQPPVTAQKESQFKRRDAIGLALSVGILQAFFPPKPAS AAVEAPPCELTAAPSGLAFCDKLVGTGPQAVKGQLIKAHYVGRLENGKIFDSSYNRGQPLTFRVGVGEVIKGWDEGIIGG DGIPPMLAGGKRTLKLPPELAYGSRGAGCRGGSCVIPPDSVLLFDVEFVSKV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 19 19 -
Phobius 1 3 3 -
Phobius 4 14 11 -
Phobius 15 19 5 -
Phobius 20 212 193 -
PANTHER 45 211 167 2.8E-88
PANTHER 45 211 167 2.8E-88
Gene3D 85 211 127 6.6E-44
SUPERFAMILY 91 210 120 1.81E-38
Pfam 108 208 101 4.1E-29
ProSiteProfiles 113 212 100 28.298

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Peptidyl-prolyl cis-trans isomerase activity Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0018800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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