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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0018800 |
| Transcript ID | LotjaGi4g1v0018800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidylprolyl isomerase; TAIR: AT5G45680.1 FK506-binding protein 13; Swiss-Prot: sp|Q9SCY2|FKB13_ARATH Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic; TrEMBL-Plants: tr|A0A072UQ15|A0A072UQ15_MEDTR Peptidylprolyl isomerase; Found in the gene: LotjaGi4g1v0018800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2373032..2377202) extracted from Lotus japonicus Gifu genome v1.2.
AGGGAATATAACAGAATCGGGTTCGTGGTTGATATATGGATCCTCATGGTACAATTTGAACCTTAATAATTGGCACCTAT CCATATCCTGGATTGGGTGAAGATGAGTTCACTAGCACCATTTTCAGCAACTGGAACATGCCTCACTTCCCTGCATCCCC TTAACAATTCATCACCGCCAAAACCACCACCTCTGACTCTGACTCCTATAAAATGTGCTGCTACCCAACTCCAACCGCCA GTAACAGCTCAAAAAGAGAGCCAGTTCAAGAGAAGAGACGCTATAGGCCTTGCCTTGAGTGTTGGCATTCTTCAAGCTTT CTTTCCACCAAAACCAGCTTCAGCAGCAGTGGAAGCACCACCGTGTGAATTAACAGCAGCTCCTTCTGGCCTCGCTTTCT GTGATAAGCTTGTTGGCACGGGTCCTCAAGCTGTTAAGGGACAACTCATCAAGGTAAAATAACATTGTACTATTATACTT AGCATTCATGGTAGCATTGCTCATTCTAATGTACTCTTGTTTGGCATTGAGCAATGTTTGTTCTCCCAGGCACATTATGT AGGGAGATTGGAGAATGGGAAAATTTTCGACAGCAGCTATAATCGTGGCCAGCCACTCACATTTCGCGTCGGTGTTGGAG AGGTATGTGATGACAAACGCCTTAGTGTCTGTTTGGATACAAGTTAAACCTAAAGTGATAGTATTTTTTTAATCCAGAGA TTTTTGTTCACTAATGTATTGAAGTGAGTGCTAGTGTCCATTTGCATTCGTGTCCATGCCTATCTAAACATAGGCGCTTA TACTTTCACACTTTATCAGCAGTGATATGCAACACAACCCAAATAACAATTTGTGTTTTGTCTTTTTGTCTACTTTGTGC ATTTATCATGTGAAGAGAGGTGGAGGAAGGTCAAAAAGAACATTGGAACACATTGTTAAAAACGATCTCATTGTCAATAA TATCCCACAAAATTTTATTTTTTTATCAAGCGGAGGTGTTGCATTGTGTGATTCATATAGCCAACCACACTTAGTAAGAT AAGGCTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCATTTTAACATTGT CTTTTGAGGACTTGGCCTGAGATAAGTTATAGAACACCATGTACAAGATTGGCATTGTAGCATTTTGATTGAGGAGTGGC ATTACAAGCATTCTCCTTTCTATTGATAAAACAAGAAAGTAGTGAATAAAGCTCTTTTGGGGTTATATTAATGAACTCAG AAAAGGCATCCACTTCTATTTAATAAGTACTTCACTGTAAGCCACATATGAATTCTCTGCTATTAGAATTGCACGCAATT ATTGCAGTCAGCCACTTTGAGTCATTGGATGAAGATCAGATGACTGTCGAATTTGAGCGGGTCTGATTTTCATCCAACAA CTCAAAATGGTTGGCTACAATGTCTGCATGCACTCTTGAGTGCAATCAATCCAAATTCATGAATAATACACTTCTGCACC GTACAGCTATGCTCAGGATTAAAATTTGTGCATGAATTATGATAATAGGTCATCAAAGGATGGGATGAAGGCATTATAGG AGGTGATGGAATTCCACCCATGCTTGCAGGTACTCTTTCTTCATCATTCTAATTTCTAAACTCATTTTTATTTAACATCT TAAGGCAAGGTAAGAATATTTACTTACTCTTTTGTAACAACATAGGAGGCAAACGTACACTGAAGCTTCCTCCAGAACTT GCATATGGTTCAAGAGGAGCTGGTTGTAGAGGAGGTAAGTACTTTTTTTGTGGTACCAACCATTTTACTTTGCCATATTA TTGCAAATTTATACATATGTTTCGTGTGAAAAAGAAAGATAAAATTTTGTTTGCTCTTGGTTATGAATATGATGCAGTAT GTGGAAGTAGTTCTTATAAAGATAATGATAACGTTTTATCTTTATTTGGTGTTAATAGTGTCACTCTAGGATGAGGGACA GGACTGTTGGTTACTGTATTCTAGGATCTAATTTTCAATATATGGATGTTGATTGTGATAGTTGTGGCTCTAATTGAATT TGCGGTGAGTGACATAACAATGCAGAATAGGAGTAGAGAATGCACTGTGTGGGAGCTCTATGTCTCTCTGTTTTTCCCCC TTTTCACTTAGAAAAGCTGGACAATAAATATGAAAAACTGTTCATTCATTATGAGGAAAAAGAATACAAATGTTAGGACT TAGGAGACACGTAAAGTTTTTATTCTATAAAATCTTTACTTAGTATTACTAGCTAGTACTGACAGATCTCTTTAAACCTA TATGGACTTGTTAATATAAAATTTGAATGACCTATTTCTCAATTATATTGAGAAATTGGAATCCTTAAATAAAGTTCCTT GGGAAAAGACATCTGAGAAAATCATGTCAAGACATACTCATGCTTTGATCATAAAAACATGGAGACTGTATGTCTGTAGA ACAATAGTGAAACACTGAAACATATGTACAGCAAATTCTGTAGAGAAGCGTGAACCAAATAAAGCATGAAAATCTGCAAT AAGCTAGAAATGTTTTATTTTTATTAATGAATCTAAATTAGTCATGTTCCCATAGATGCTTAGCAGTTGACTGCAATACT AGTAATCTAAAGAACTATGCATTGCGTTTTACAACTTCTTTTCTCATGAATTTTCCTTTTACCATTTTTCTTAGCCAAGC AGAAATTTATACTTAGTTTGATGCAGGTTCGTGTGTCATTCCTCCTGATTCGGTACTCTTATTTGATGTGGAGTTTGTTA GCAAAGTATGATTTACAAAGCCATGCGCAGCCAAATTACTTTCCTTTATCTTGAGAATGGAGCTTAGATTTGGATTAGGT TCCCTGCAGGAAGGGATACACTATATCCATGCAATCACACAATCTGAGTCATCCGGTCATGATCGTTCGGTTCATATATT TCATCAAGATCGGACCATAGATATAAGTTTAAAATCTGAGCTGGCCGATCTTGATCCGATCGCTCAGATTGCGTTATTGC GTGAATGTAGAGATTCCTGACAAATCCATTTCCCTTAGATTTATATTGTTTTCCCTCTGTTGGTTATATATTTGATGACT GTGATATTACCTATATTACACGTAAGAACAGTTTCAGCGTTCTTATATCTAAAGTTGAACAAGAGAGTAAAGAATTACCT GATAAATTCATGACTGATTAGTTACAATAAAGATTGATGAACCACTCTTTTCGGTGTAGACACTAAAATATATGAAGAGA AATAAATGTGATATGTGATATGTGATGTGACAATAAGAGAACGATAAAGAGAGAAAAAAATGTGTATATGAGTGTTGTTC TGTTTTGTCACTTTGTGGTACACGTGGCTGGATTAGTTAACATGTTGTGTATAAACTCTGCAGTCATGACTTGATAAACA TAGAAATTGGACCAAAAGTTGAACTGTTATTAGCTCCAGTAGAGAAGCACTTTAAGACCACTCCTCCAGTGTTGAAATGA CCCAATAAAGAAAACATAAAAGGAAAGCTGTTAAAGCACTTTGAGTGCTTTTTGCAAAGCAGGAAACCAGTTCTTTCATC TCTTTTTATTGTTTGACAAACATCTCAAGAGCCTTAGCCTTAAGAAGCAGAGAAGTTGAGTCCTTGTGATGAATTAAAGT GAGACAAGACCCCTACAACCAAAAGGGAAGGGTAAATCCTGTTCTGGTGCCTCCATATAGCAATATAGACAATACTGTTC AAAATTAGTTCACCAAAGAACCGTGGTGTTTTTACTTGTTATAAAAAAGGTAACATTTAGGCATTTAGCATATGTTGTTT AACATGAGTTCTTTATGTGTTAACATCAATTTGTAAAAAAATTCTTTTAATTTTTAAACCAGATTTTTCTGAGTGTATGT TTTGATACATGAAAGAAAACCACGTGAGTCAAAATCATGATGAACAGAAACAACTTCTCTTACCTTTCGTGGTTATTCAT CGTGATTTTTTAGAATGTATGTTCATTTTGTCCATAATAGACAAACTTATAAAGTATCAAAGTTTGCATGGGATGTCGTC TCAACACAACTTTGACAAAATGCATACAATGTGGGATGCATTTTATCACACAAATGTTGTAAAGGTAGAATTCATGGTGA TTATCACTTCG
CDS sequence (LotjaGi4g1v0018800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCACTAGCACCATTTTCAGCAACTGGAACATGCCTCACTTCCCTGCATCCCCTTAACAATTCATCACCGCCAAA ACCACCACCTCTGACTCTGACTCCTATAAAATGTGCTGCTACCCAACTCCAACCGCCAGTAACAGCTCAAAAAGAGAGCC AGTTCAAGAGAAGAGACGCTATAGGCCTTGCCTTGAGTGTTGGCATTCTTCAAGCTTTCTTTCCACCAAAACCAGCTTCA GCAGCAGTGGAAGCACCACCGTGTGAATTAACAGCAGCTCCTTCTGGCCTCGCTTTCTGTGATAAGCTTGTTGGCACGGG TCCTCAAGCTGTTAAGGGACAACTCATCAAGGCACATTATGTAGGGAGATTGGAGAATGGGAAAATTTTCGACAGCAGCT ATAATCGTGGCCAGCCACTCACATTTCGCGTCGGTGTTGGAGAGGTCATCAAAGGATGGGATGAAGGCATTATAGGAGGT GATGGAATTCCACCCATGCTTGCAGGAGGCAAACGTACACTGAAGCTTCCTCCAGAACTTGCATATGGTTCAAGAGGAGC TGGTTGTAGAGGAGGTTCGTGTGTCATTCCTCCTGATTCGGTACTCTTATTTGATGTGGAGTTTGTTAGCAAAGTATGA
Protein sequence (LotjaGi4g1v0018800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSLAPFSATGTCLTSLHPLNNSSPPKPPPLTLTPIKCAATQLQPPVTAQKESQFKRRDAIGLALSVGILQAFFPPKPAS AAVEAPPCELTAAPSGLAFCDKLVGTGPQAVKGQLIKAHYVGRLENGKIFDSSYNRGQPLTFRVGVGEVIKGWDEGIIGG DGIPPMLAGGKRTLKLPPELAYGSRGAGCRGGSCVIPPDSVLLFDVEFVSKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 212 | 193 | - | – | |
| PANTHER | 45 | 211 | 167 | 2.8E-88 | – | |
| PANTHER | 45 | 211 | 167 | 2.8E-88 | – | |
| Gene3D | 85 | 211 | 127 | 6.6E-44 | – | |
| SUPERFAMILY | 91 | 210 | 120 | 1.81E-38 | – | |
| Pfam | 108 | 208 | 101 | 4.1E-29 | ||
| ProSiteProfiles | 113 | 212 | 100 | 28.298 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). |
Expression pattern of LotjaGi4g1v0018800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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