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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0020100 |
| Transcript ID | LotjaGi4g1v0020100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase; TAIR: AT1G48100.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100; TrEMBL-Plants: tr|K7KQ07|K7KQ07_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0020100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2510133..2513469) extracted from Lotus japonicus Gifu genome v1.2.
ATATTTTTGGTGTATACTGAAACTCAACTTTGAAGTTTGAGTTCCTCATGGATCATCTCATTCATGGATTACTTATTCTC TGGATTATTACTTTGACACTTTTCAACCACAATTTGGTAAATGTGGAAGGAAGATACCACCATCTTACCAACCAGAAGAA TATATCCCCTGCTCCTGATGACCCTCCTAATGATCCCTCACCCCCTTCAATTTCTCCTAGTTTTCCTTCTGACCCTTATC CAAATGATCCCCAAGATTCCTCTTCAAATGGTATCTTTGATGTGAGATCCTTTGGGGCTGTTGGAGATGGTTCAGCTGAT GACACACCTGCATTCAGGGCAGCATGGAAAGCCGCTTGTGAAGTAGAGTCAGGGGTTGTTCTGGCTCCAGAGAATTACTG CTTTATGATCACTTCAACTATTTTTTCAGGTCCATGCAAGCCAGGACTAGTGTTTCAAGTAAGAATTTTTAATTGAATTT CCAAGTTCATCATCACATTTCCTATGCTTTAGAGACTTTCTAATTTGCTTAAGAGAAATTATACTAATAATCTTTAACTT TTTTTTGTTGAGATACTTTAAAAAGAGAATGCTTGTTAATAAAAGAACACTTTGGAATGTATTATCAATCAAGAGCTGCT AATTTATATATACATGTGTTTGTGAGATAGTACTGACCATTTCATTTTACATGTGTTTCAATATTGGTTTTACTTAAATT AATCTTGATTTTTGACAATTATGTAAATTGAAGGCTTAATTACACTTTTTATCGCAATAGTTTTAACATATGTAATTTTG GTTCTTAAAGTTTAAATTTCTTCAATTAAGTCACTCTGCTTTTAAAATTAAACAAGTATAATACAAACATTAATAATGAA ATGATGTTTTTATGTGGATCACAATTTTTTACATGAATGTCATGTTAAGACGATTTATGTCATTTTTAACATTATAATTT GGGATATATGTCAATTTTTTCCGTTAGTTATTAGATAATAAGTTAAAATTTTGACCGAATTTATTCAACTTTAAAAGTGA AAGGATTTAATTGGAGCAATTGAAACTATAAATAGAAAATCACGCATTTATGAAAGTATAGGCAAAAAACAAAGTTGAAT AATAAAAATCCATTGTTCCTATACAGATATGTGGGTGTGTGAGAATTTCACTAACAAGGTTCAAATGTGACCAGGTAGAT AGCACACTCATGACACCAGATGGACCAAATTCCTGGCCAGAAGCAGATAGCCTCAATCAGTGGCTTGTCTTTTATAAACT TGACCAAATGACTTTTAATGGTACAGGAATCATAGAAGGCAATGGAGAAAAGTGGTGGGATCTCCCCTGCAAACCTCACA GGGTAATAATATTTTATAATGTCACCAATACAATGACCTAATATATGTTTGTATCGGCCTCTATTTCTTTGTAATCAATT CTGACATCGAGAGGCTACTCACATAAGTTTTATTAATTATAAAAGAGTTTCCATACATGCGCCTAATCATTCACCTTTCC ACATTATTGCTTGCATTCATTTGATGTTGAATGAAACCCCACTAAATAAACTTGGCATTTTCAGGGTCCAGATGGAAAAA CTTTATCAAGACCATGTGTCAGTCCCACTGTGAGTAAACCATTCTTCAGAACTCAGCTCAAGCATTAACTGAACTTTTTA TGTATATCACTGTCTTACAGTTGTTTTTCCTTTTTGGTTATAGATGATAAGGTTCTTCATGAGCTCCAATTTGAAGGTGA TTGGACTGAAAATTCAAAACAGTCCTGAGTTCCACATGAAATTTGATGGCTGCCAAGGGGTAATGATTGATGATGTGTCC ATTTCTTCACCAAAACTCAGCCCCAACACTGATGGAATCCATGTAGAAAATTCAAATGATGTTGGGATATATAACTCCAT GATAAGCAATGGTAATGGCCAAAGAGTTACTGGTTTAGTACTTTGGTTCTATATGTTACTATTTCTTAATGTTTAGTTTC AAATATCATGCTTTGAACAGGTGATGATTGCATTTCAATTGGACCCGGGACCTCAAACGTGGACATAGCTGGTGTTACTT GTGGTCCTAGCCATGGGATTAGGTACAATGCATAAGCTTCTCTTCATTGATGATTAATAAAATTAAATACAAAGTGATGC AATTAACTTTTAATAATTTATAGTCAAATCAATGAAAAGAGAGTTTAAGTTTGAAGGTGCCTCCAACTCATTTCATAAAA GCAAAAAAAGAATGAAAAAGATGGAGTTCATCAATGCTATGAGAACAATTTTCATACCTTTAAATGATATATACTTGATT CTTTTTAAAGGTTTTGAGTTTAGGTCTTGAGTTATGTAAGAAAAAACTCGGCTAACAGAGCCCCACTCAAATGTGGATAT TTCTGACTCAAACAAGATTGCCTAATGTGAAGGATAAACTAAAAAACAACTTCCATGATCTTCGTTAGTTTTTCTTTATC ACGAGTCCCATGGCAACAAATTTTAACCAACAAGTGATTAAATCAAGTAATACATGTTTGATTCTCCATAGCCAATATCT CAAGTTCAAGTGTGGGGAGAAACCTCCGTTGGGAGAGCCATTCCCACTAGAGTACATGCATTCCCGACTCGAACTGGATT GCCTCATGTCATTAAATCACATAAAAAATTTCCATGATCTTCATTAACTTTAGTCCAATGGCAGAAAATTTTACCCAACT TGGTCAATTACATATATAACAAACCAATTGTGAAACATTTGCAGTACCATCTTTTCTACAATGCTAATTTTACCATGTCT CACTCACTAAGCTTAGCATATTGTTTTTACAGCATTGGAAGCCTTGGTGTGCACAATTCCCAGGCATGTGTCTCGAACTT AACTGTTCGAGACACCATAATAAGGGAATCAGACAATGGACTCAGAATTAAAACATGGCAAGGTGGGACAGGATCTGTTT CAGGTTTGAGATTTGAGAACGTCCAAATGGAGAATGTGGGAAACTGCATCATTGTAGACCAGTACTACTGCATGACAAAG GAATGCCTGAACCAAACTTCAGCTGTTCATGTTAATGATATTTCCTACAGGAACATTAAGGGCACTTATGATGTGAGAAC TGCACCTATTCACTTTGCTTGCAGTGACTATGTTGCCTGCACAAACATAACACTCTCTGAGGTTGAGCTTTTGCCTTATG AGGGAGAATTGCTTGATGACCCTTTTTGTTGGAATGCTTATGGGACTCAAGAGACCTTGACTATACCTCCTATTAATTGC TTAAGAGAAGGTGACCCTGAGGAAGTGGGTGATCTTTCTGCATATCAATGCAGTTAA
CDS sequence (LotjaGi4g1v0020100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAAGGTTCTTCATGAGCTCCAATTTGAAGGTGATTGGACTGAAAATTCAAAACAGTCCTGAGTTCCACATGAAATT TGATGGCTGCCAAGGGGTAATGATTGATGATGTGTCCATTTCTTCACCAAAACTCAGCCCCAACACTGATGGAATCCATG TAGAAAATTCAAATGATGTTGGGATATATAACTCCATGATAAGCAATGGTGATGATTGCATTTCAATTGGACCCGGGACC TCAAACGTGGACATAGCTGGTGTTACTTGTGGTCCTAGCCATGGGATTAGCATTGGAAGCCTTGGTGTGCACAATTCCCA GGCATGTGTCTCGAACTTAACTGTTCGAGACACCATAATAAGGGAATCAGACAATGGACTCAGAATTAAAACATGGCAAG GTGGGACAGGATCTGTTTCAGGTTTGAGATTTGAGAACGTCCAAATGGAGAATGTGGGAAACTGCATCATTGTAGACCAG TACTACTGCATGACAAAGGAATGCCTGAACCAAACTTCAGCTGTTCATGTTAATGATATTTCCTACAGGAACATTAAGGG CACTTATGATGTGAGAACTGCACCTATTCACTTTGCTTGCAGTGACTATGTTGCCTGCACAAACATAACACTCTCTGAGG TTGAGCTTTTGCCTTATGAGGGAGAATTGCTTGATGACCCTTTTTGTTGGAATGCTTATGGGACTCAAGAGACCTTGACT ATACCTCCTATTAATTGCTTAAGAGAAGGTGACCCTGAGGAAGTGGGTGATCTTTCTGCATATCAATGCAGTTAA
Protein sequence (LotjaGi4g1v0020100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRFFMSSNLKVIGLKIQNSPEFHMKFDGCQGVMIDDVSISSPKLSPNTDGIHVENSNDVGIYNSMISNGDDCISIGPGT SNVDIAGVTCGPSHGISIGSLGVHNSQACVSNLTVRDTIIRESDNGLRIKTWQGGTGSVSGLRFENVQMENVGNCIIVDQ YYCMTKECLNQTSAVHVNDISYRNIKGTYDVRTAPIHFACSDYVACTNITLSEVELLPYEGELLDDPFCWNAYGTQETLT IPPINCLREGDPEEVGDLSAYQCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 250 | 250 | 7.6E-81 | ||
| SUPERFAMILY | 1 | 259 | 259 | 2.73E-86 | ||
| PANTHER | 2 | 255 | 254 | 1.0E-162 | – | |
| Pfam | 2 | 216 | 215 | 1.0E-71 | ||
| PANTHER | 2 | 255 | 254 | 1.0E-162 | – | |
| SMART | 30 | 56 | 27 | 480.0 | ||
| SMART | 57 | 78 | 22 | 1900.0 | ||
| ProSitePatterns | 87 | 100 | 14 | - | ||
| SMART | 110 | 131 | 22 | 73.0 | ||
| SMART | 139 | 160 | 22 | 510.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0020100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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