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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0020400 |
| Transcript ID | LotjaGi4g1v0020400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT4G20030.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1; TrEMBL-Plants: tr|A0A0L9T583|A0A0L9T583_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0020400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2541048..2544249) extracted from Lotus japonicus Gifu genome v1.2.
GCACAACTTAAGAATCACTCAACCTAGAGATAAGAACTTGAGTACTTGACCCTTTATGCCCCATGGTATTTGAATCCTCA TGTAACAAATTTTTAGATTTTTAACATTGACATGCTACATAGACTCAATATCCATGGAGGATGACACTAGGGCAAGTTTG TTTTTCCTAAACGAGGACGAGGAGAACGAGGTGGTGTGAGTCTGTGTGTGTCGTTCACTTTGAAGTGGTTTGTCGGCAAT GGAGATGAGCACGTTGGCTTCGTTCCCTTGCTTCTCAACATCAAAACCTTCTCTTGTGAAGCTCAGGCCATCATCATCGT TATCTATGCGACCTGACTACCCTCTTGCAAGCAAAATTGTTGTTAAAAGTAATCCTCATTTCTCAACTCTATATTCTTTT ACATGCACCTCTGTGCTTTTGACGCATGCCCATCTCGTTTTCAATTGTGTTTGTGTTGTTTGAGCCTTGTGGGCATGTAC ACGCTTGAGAATAGGCACCTTTTATCCCTTCCACCCTAGTAGGTCTATGCAATTTGGTTATGTGGGTAGTTAATTTATTT GTTGGAATTTCCTTGTCAAATCTTAATTCTATATGACTCTTGTTTTACTTGTGGGTGGCGTGGGGGATTTAAGGTTAAGA TGGGTATTTGAAAGATTAAATGCTTGAAACATGGATAGTTGTAGAGTGTATTTGGTGTGGGAAAGGTTTTGTTTTGAAAT TAAACAGGCAAATTTTGTATTACATTTTCCTGAGATGGATATAAATATAAGGTTTTTAGACTGGCCCTCATAAATTTGTG ATTATTTTCTGAGTTTGGATATTAGTGAGGCAAACAGACTGATTGAAGTCTTTGATGATTGCTTATAGTTGTCTCTTGAT TATTATGCAAGGTACATGATGTTGCATTAAATCTCTAGTGAGTGCATTATAGTAGGATTTGATTTGGTGAGTATCTTTTG TGCCTGCCAAATCAAGTTTCAGAGCTAACTTTACGAATAAAGCCACCATTTTCCATAGGATTGAAGTTTGAAGATGACCA TTTGATGTCTATGAACATGATCTGACTTGTTTTATGTGAATGTTGACTCTTGCTTGAGTTTGCTTTGCTATGTTCATTGT TTTTCTTGCTTACGAAATCAGAAGTGTTACAATAATGTTCTTCCTTGTTATTTCCTAATTAACTTGATATCATGCAAGCA GAGATGATGGAAAAGAACAATTATGCAATGATTATGGGATATATAACAAGAGTCATAGGAAAGGAGTGGTTTTGTGTTTA TAGTACTGGATGTCTCTATGTGGTTCCTAACTTAGTTACTTTTATTGCCTATTTTTGAATTAAAAAAATTGTTGCCCATT GTGTATGAGGAGTACAATGTTGGTTGCCAGACATCTTGTGCCAAGGAAGTTCATATGTATGTATCTAACAGTATGAGAGG ACTGGGAGGAGCGCTGTTATTAGTATGAAGGAAATGGTGGAAGGAAAGTGTATCGTGTGGCAGCATGGAATTGGAGAGGG AAATTATGCAATGATGGGAAAGTACAAGAAAAATGTGAATTAAGGAGACGGAAAAGAGTGGGGGAGAACAAAATTTTAGG AATTATTTCAGGGACTTAAGTGTGATCAGAGATCATTTTCTCCTTGGTTTGTATTTTCTTGCTGTATTTTCTACATTTTC ATCCTTTTGGAATCTGTTTGTTCTACTACTTCTCTGATCAGCATTTCCTCTTCCCTTCTTAAGGAGGTTTCCTCGTTGAA TACCATTTTACAGTAATACCAGTTCAAAACAAATGTACTTTCTTGTTATGAAGGTGTGTACTGGGCTTTCTTTGCTGATT TGTGTTGCCACTTGCACACAACTGGAATTTTGTCATTCATAAATTTTTATCTGGACATTTTCAGAATAATTGTGTTTTAT TAGCCTCCATTTATGTTTAGGTCTTTTTTTGGAGATGAATGAGACGTTCTTATTTATTAAAAATTCAAAGGTGTTTAACA GCCTTTTTAAGCTGATATTTTGTTGTTCTACATGCTTGTTTTCTCTGTTTATGTGGATTCCTGATCCTGTCCTGTATTGT AATGGTAATGGGTTCTTGCACAATGATAAAAAGAATCATTTTATTGACGTCTCTAAAGTATCATTTTACAGTTTAAAGTA TCATTTGCTGATATCATTTACCAACAGTTTTTTTGTCTAAAGTATCATTTACTGATATAATTAGATCAAAGAATTTAACT TTCGCTTCATTTTACATAATTTTGATGAATTGTTGGGTGGAGCCCTTCTAATGTCTGCATGCAATGGAGCTCATTATTTC TTCATTTACTTCACTTTGTTCTTATTTGGAGGCAGATTTACCATATTCTACTGGTGAGACTACTTTGCAGAAGGAATTTT CAAATTTTGGCAAGATAGCTGAAGGTAATTAATTACATGAAAATGTCTCATTATTCGTAATAATGTGGGACTCTTGTAGT TTACATAATGGCTTTTGGTACTTTAACTCATGCTTCTTGAATCATGCATTTCGTGTGGACTGCAGTTAAAATGGTTAAAG ATGCAAACACGAAAAGATCTAAGGGGTATGCTTTTATTCAATACACATGTCGAGACGCTGCCATGCTTGCTCTAGAAACC ATGGATCAAAAGGTTCACATTTTCATGTCATGCCTAGCCTTTAGATTAACAACAACCATGACAACTACATGTCCCCTTTT AACTTGTTTTGGTCCATTGTCAACAGGATTTTTATGGAAGGACGATCTATGTCGAAATTGCAAAACTGGGTTGGGATGAT TTTGATGCACCCATAAAGACCTCAGGGCCCCCAAAGAAGTGGAATATTCCAGAGGAAGAGGAAGTGGTAGATTGCTGGTA CTGATAAAAATTCAGAATGAATAAAGCTGTAGAAGAGAAAATTATGTAACAAACAACAACTATCATGTTTATACAAGAAT AGCTATAGGCTCGATGGCACACTAGATTTTAGTAATATTGTTGATATACTGTAGTTCATGGTGATCATTCATGTTATTTT CATTGTGGCACAAATTGAAAGGTGTCTTTTGAAAACCAGTTCTGGTGGACATGAACTTGAATCAGCCTCTAGAGTTGTCT GTTTGGATGGTTTAAATTTAAAATATGATACTAGGTTTATATTCAATCTCCTCAAATCTAAATCATAGGATCTTGATCGG AC
CDS sequence (LotjaGi4g1v0020400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATGAGCACGTTGGCTTCGTTCCCTTGCTTCTCAACATCAAAACCTTCTCTTGTGAAGCTCAGGCCATCATCATC GTTATCTATGCGACCTGACTACCCTCTTGCAAGCAAAATTGTTGTTAAAAATTTACCATATTCTACTGGTGAGACTACTT TGCAGAAGGAATTTTCAAATTTTGGCAAGATAGCTGAAGTTAAAATGGTTAAAGATGCAAACACGAAAAGATCTAAGGGG TATGCTTTTATTCAATACACATGTCGAGACGCTGCCATGCTTGCTCTAGAAACCATGGATCAAAAGGATTTTTATGGAAG GACGATCTATGTCGAAATTGCAAAACTGGGTTGGGATGATTTTGATGCACCCATAAAGACCTCAGGGCCCCCAAAGAAGT GGAATATTCCAGAGGAAGAGGAAGTGGTAGATTGCTGGTACTGA
Protein sequence (LotjaGi4g1v0020400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMSTLASFPCFSTSKPSLVKLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKG YAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPKKWNIPEEEEVVDCWY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 12 | 9 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Gene3D | 16 | 118 | 103 | 6.3E-26 | ||
| Phobius | 18 | 147 | 130 | - | – | |
| SUPERFAMILY | 22 | 119 | 98 | 1.24E-27 | ||
| PANTHER | 29 | 115 | 87 | 1.3E-36 | – | |
| PANTHER | 29 | 115 | 87 | 1.3E-36 | – | |
| ProSiteProfiles | 38 | 116 | 79 | 17.848 | ||
| SMART | 39 | 112 | 74 | 1.7E-24 | ||
| Pfam | 40 | 109 | 70 | 3.4E-20 | ||
| CDD | 40 | 112 | 73 | 3.85103E-22 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0020400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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