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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0021100 |
| Transcript ID | LotjaGi4g1v0021100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Thioredoxin; TAIR: AT2G35010.1 thioredoxin O1; Swiss-Prot: sp|O64764|TRXO1_ARATH Thioredoxin O1, mitochondrial; TrEMBL-Plants: tr|I3S832|I3S832_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0021100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2598692..2602193) extracted from Lotus japonicus Gifu genome v1.2.
TACTATTTTACAATTATTCTAGAGCTTTATGACCCGAATCTCATGTAGAACCTCATTGGAGCAATTTTTGTTAAGGATCC CGATCTTTAGAAGCAGAACTCAAGATCCCAGTCCAATCTCAATTAGTGTTCTGCGGCATCCAAAAAGTGACTGAGTACCA ATGTTTATAAAAAAAAAAAAAAAAAGAGTTACTAATCAGTAATCACTCTCAGTAAAAAATCACTCACATCTATCTATTGA AAGTTAAACATATTCTTTGGTTGATGAAATGATTTCGAAGGCGTAAACCCTAAACCCCCATTTGATTGTTTTGAACGGAG GAGAATTTGAAACAGAAGAATCACAGAGAGCGAGTGAGTGAGGAAGAAGAAGATGTCCAGAAACTTGATCCTCCGATCCT TCGCTCTCCGCCATGCAATAAGGAACGCCGTTCGCCCATTCCTGAACCGCACCCACCTTCCTTCTTCACTTTCCAATTCC AAAACAACCTCCCTCTTCGCCGCCACCATCGCCTCCACTCTCCTCCCTCCCTTCCACCACTCCCGTTCCCTTTGCTCCGC CCCAGGTCCCTCCCTCCCTCATCTCTCTCTATCAATTTTTAATTTATTCAATTCTTATACTAACTCATTGTGAATTTATT TTTCAGCTAATCCCGGTGTTGTACTCGTTAATTCAGAGGAAGAGTTCAATAGAATCCTCACCAAAATTCAAGGTTTCTGT CTTTTGTTTTTTAATCTAAAGTTTTATTTTTCAGTTTTTTACTAAGCACAAGTAGGAGGTTTTGTTCCCCTATATTTTTT TTTGATGAATTTCTGTTGAATAGATAACTCGTTGCACGCGATCATCTATTTCACTGCAGTTTGGTGTGGACCTTGTAAGT TGCTATGCCTTTTTTGTTTTGTTGGCTAACATCTTTGCACTGAATTTACCCTTTTTCAGCTGTTTTGGTTACATACTTGC ATGATCGTTACCGAAGGTTAATTGGAAGATGACCAAGTAGTTTAAATGGAAATGAATGTTTGCGATGTGATTAAAACTGG TCCAGTTAATTTTAATCTACATCTGAATCTTGTTATTAGGCTTGTGTCATTGTTAGGTTCACCGAATGTCCAAAATGATG CTGAAAATATCCATAAGATCTCGTTGGAAAATATAAGAACTTCTGCAAAACGGTTCCCGGCCCCTGTTTTTGTTGAAAAC TTTAGTTATTTCACACATTATTCTCATTTGACAATCTATTAAGACGTGTTTGGTGTTTTTGCTTCATTCATTGTTCACAT ATTTTTCTTGCTAGCTATATTCTAAAAAACATCTCACTGTTACCTATTGTATATTTCTGTTTAGGCAAGTTTATTTCTCC TATAGTTGGGGAGCTCAGTAAGAAGTACCCTCATGTAACAACATATAAGATTGACATTGATCAGGTATGGGATATATTTA ATGGTGTAGTATATGATTCTGAATGGTGAACCAAATTATGGTTCATATTGAAATTTGGAAGGACTATTTTTAATTGTATA TATTAGATTGTCATTACAATTCATAATTTAAGCAAGTTTTTGGGGTTCAATTGTCAACTCTTGTGAATGGAAAAAACTCA TTGGTCGGCCCCCTACCACTTAGTGCGCTAACCGTGGGGGAAGGGATTAGTGTCACGGCTATCGGCTGTGGGGATACCTT GGTCTAGACAAAAATAAAAAGTTTATACTCAAATGCACAAGTCTAATTACTTTACTGAACAAGTGAACATTATATAATCA ATTAAGAAAAAACTAGCTTGCAAATTGAAAATTTAGCACGATTTCCACCTTTCTTCCCTTGCTAGTTTGAGTGGTCGTCA AATTTTGCTACTGCCTGACTTATTTAAGTGGCAACCATCTGGCTGTTTTTGTTTTTGGGAATTGGTGGTTCTCCCATTTG TTTTCAGCTTTGCCATTAGTTTCTTCCATTTCAGAACTATGTTTTTGCGATAGCTTGATCACTTTTATGCTTTATGGTAT GCTATGCATCACAGTGGCTTAATCTTTTACCTTTTCACCCATATATTCCAGGAAGCACTTCGTGGCACATTGACAAAGTT GCAGATTTCGTCTGTGGTAATTTATCTAATGATTTTATTTCTTATTAGAAGTTTATATTTTTGGATATTGTGTACTGAGT TAAAAAACATTTAAATTATGCATGTAATGAAACTGCTTGTACCCATGAATTACATGCCATTCATAAGAGGAAATTTTGCC TCCAATGCGTCAATCATCCTCTTCATTAATTCATGTCTCTTCTTGCCTGATTTATTCTTTTTGTAATGCTTCAATGGTCA CAATTAAATTAGACTTTCTGTTGCCTTCCCTTGGCTCCTAGAGTGGATCATTACTTGGTTGAAGAAACAGAAAATATACT TATCATGGATGCATATTATCAATAGCACTATGATGATAGGGTGGCCTTAGGCTGCTGCAGCAGGTCTTCCATGATATTGT GTTTTTCTGTGGTGGCCTCTATCCTACTCATGGGCAAAATCCCATCTTTACCCCCTGTTTCCTGAGTTATAGATCCCAGT TGTTTTAGGTATTTTGTGATTTTCCTTTTTACACTGGAAAAGATATAGGCTTTGGGTTCATGACTAATGATTTTATCTCC TTACTCAAGAACTTTCGTGGTGAATGACTGGTGATTAAAATTATGAGTTTATGACCTGTCTTTTCTGTGATTAATGAAAT GCACCTGCTGAACTTAACTGATTCAATTGTGTATGTGTGAATAAATTGACACCCATTTCTCATATTTTAGTCACTGGACA TACTGAAGTTTGCGTTATAATACCTATGCATGCCAACTAGTACCTGCTATCCTTATCAGGCTTCATGTAAATGTTTTTTC ATCATAATATCTTTCCTCCTGAAAGTTAGCATAACAATGTTTTACCTTGCTGCAGCCAACACTACATTTCTTTCTGAACG GGAAAAAGGCTGATGAGCTTGTAGGCGCTGATGTTGCAAAACTGAACCGTATTACAGAGAAACTCTTCAAGTAATCCTTT GGACTATAACTTCATGTTATGCTTTGTCAATACAATAATACATGCACTGTGATGCTTTGTTGTGTGTTTCAGGAAGGACT GACTTTGGGAATGGCTGACGGCCCATGAAGTACAAAGTGAGAAAAACTGCAAGTGTGTGCTTAGACATTCTTTAGGTGCC ACTCCCGTTAAATAGCTTGGTTTCAGTGCCATCGTTTAAGATTGAAGTGTTATTTATATTTTATAGTCATCTTCTGATTG TATTTTTAAATCCATGAGAGAAGAGAGATAATTTGTACACTTGCTTAGAGCATGAGATATTTGCAATCAGTGATGCTTTT TTATATATGGAAAGAATAATGTGAAGTTGAAAATTCTCAAAACATGAATCCTTTACGCTATGCTTGGATGAGGCGATGAG CAGGGAAAATGGCAGTTAGTTAGTTTTGGCATTCAACATTGTTGCGTTCAATTCAGTTTTCT
CDS sequence (LotjaGi4g1v0021100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCAGAAACTTGATCCTCCGATCCTTCGCTCTCCGCCATGCAATAAGGAACGCCGTTCGCCCATTCCTGAACCGCAC CCACCTTCCTTCTTCACTTTCCAATTCCAAAACAACCTCCCTCTTCGCCGCCACCATCGCCTCCACTCTCCTCCCTCCCT TCCACCACTCCCGTTCCCTTTGCTCCGCCCCAGCTAATCCCGGTGTTGTACTCGTTAATTCAGAGGAAGAGTTCAATAGA ATCCTCACCAAAATTCAAGATAACTCGTTGCACGCGATCATCTATTTCACTGCAGTTTGGTGTGGACCTTGCAAGTTTAT TTCTCCTATAGTTGGGGAGCTCAGTAAGAAGTACCCTCATGTAACAACATATAAGATTGACATTGATCAGGAAGCACTTC GTGGCACATTGACAAAGTTGCAGATTTCGTCTGTGCCAACACTACATTTCTTTCTGAACGGGAAAAAGGCTGATGAGCTT GTAGGCGCTGATGTTGCAAAACTGAACCGTATTACAGAGAAACTCTTCAAGAAGGACTGA
Protein sequence (LotjaGi4g1v0021100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRNLILRSFALRHAIRNAVRPFLNRTHLPSSLSNSKTTSLFAATIASTLLPPFHHSRSLCSAPANPGVVLVNSEEEFNR ILTKIQDNSLHAIIYFTAVWCGPCKFISPIVGELSKKYPHVTTYKIDIDQEALRGTLTKLQISSVPTLHFFLNGKKADEL VGADVAKLNRITEKLFKKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 57 | 177 | 121 | 9.054 | ||
| SUPERFAMILY | 61 | 168 | 108 | 2.13E-24 | ||
| Gene3D | 63 | 179 | 117 | 5.4E-26 | ||
| PANTHER | 69 | 175 | 107 | 1.7E-37 | – | |
| PANTHER | 69 | 175 | 107 | 1.7E-37 | – | |
| Pfam | 70 | 167 | 98 | 2.5E-19 | ||
| CDD | 76 | 175 | 100 | 2.14827E-28 | – | |
| PRINTS | 92 | 100 | 9 | 8.4E-5 | – | |
| ProSitePatterns | 93 | 111 | 19 | - | ||
| PRINTS | 100 | 109 | 10 | 8.4E-5 | – | |
| PRINTS | 141 | 152 | 12 | 8.4E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cell redox homeostasis | Any process that maintains the redox environment of a cell or compartment within a cell. |
Expression pattern of LotjaGi4g1v0021100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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