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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0024600 |
| Transcript ID | LotjaGi4g1v0024600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group family protein; TAIR: AT2G34450.1 HMG-box (high mobility group) DNA-binding family protein; Swiss-Prot: sp|O64702|HMG14_ARATH High mobility group B protein 14; TrEMBL-Plants: tr|I3S5Q5|I3S5Q5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0024600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3051340..3055398) extracted from Lotus japonicus Gifu genome v1.2.
CAAGGTTGGTGTCTAAAAGGTCACCAGTATCCAACTCCAAGCAAAGATGGTGCAAACGGCTAAAGGCTCGTCGTCGTCGC AGAACAACGTTTCTCACTCCGCTTCTCCGGCCACCGTCTCCGCCTCCTCCCGGTACCCATTCCTCACCACTCTCTCACTC TCCGTTTTCTTCACTGTTTCACAACTTCCTCTGCGGTCCCCATTGGAACCCAGAGGAAGCAATGCTTAAATTTCAACACA CATAGTAAAGTTCTGATCTTTCTTTCAAGTTTGCTATGTCTGTATAATCTTTCTCAATTGGGTCAAATTGTTTGTGATAA CCATAGTCACTTAGTTGCTCACTTTGCTATTCAACATGTACTGGTTAAAGGGGTGAAATATGTCAAGAAGGAAGTTATTA TAGACTATGAAATTTTGGGTTGGATTGTGTTGTGATTTTTCACGTGTTGAAATTTGCAAGCTTGTGTGTTGTTTCAACTT CTGGGAATTGAAGGTGATCATTTTGAGCATAGTTTTTATTCTTTCTGTGAAGAGAGTTTTGTAATTCAACATTTACTTGT TTGAAATTCAGGGAAGGACTTGTAGTTTTGGTTCCTATACTAAGCTATGATAAATTGTCACTGAAATTTAATCCCCAAAT TTTTAAGTTGCTAAAATCAAGTCCTACCCTCACTTTATCTCTTTACATAAAAATTGAACTAAAGGGTATCATATGCTCCC ATTGAATGGGTACCGGAGCAACACCCTTAAGTTATTTTGAAACCCTTTCTATTTAAAATCCACCAATTGAAAATCTGATT TTATTCAAAACTTATCAAATCCCAAATTTATACCTTTTGAAACCCTAGCTTTACTTCATTTAAGGTCCTTTGGAATTCCG CCAAGTTTCTGAACCTCAAAGATGATTTTTTATCATACGCCCTTAGTGAACACAAATTATTTGAATAGAATATGAGGTTT AGGTAAGTGGATTTTGATGGAAGAACTTGATTGTAAACTTTAAAATATTGAGTAATAAATTCATTGAAAAAAGTATCGAG AGGCAAAGATTCTTATTGGCCATTATAAGGGATAAAAAATTCAAACGTGCGACTTTAGACAAGAAACTGAATAAATTGAT GGAGGCATTGTGAAGTTCTACTGGGTCTAGGTTTACTCTATCTTCTGGTGTTGCTAGTGGAAAATTAATAGTTACATGTA TATATATTCTGAAATAGTTTACATTGCTGAACACAATGTTGCATTGGATTTTTCAGCAAACTAGTGTTGAGGGTTAAATC AAGTGAGCAAATGAAGAGATCGGCGCAACAGACTAAGTCAACAAAGAAACCCAAAGCAAAGCAAAAGACGAGCAAACAAA GGATTGACGCTAACAAGCCAAAGAAGCCCCCCACTGCCTTCTTCTACTTCTTGTACAGCTACTTTTATCTTCCCCTTTTC TTTATTTATGCTGATTACTTCTAATCTTTTATGAGTTGTTATTATCAGACAATTATCTACTCTTTGTATTTTGCCATTTG TTAGAATTGTTTATGGAAAATATTAATTTAATTAGAATTTAGCACCATTTTGGTTTCATGTTTGTATTTTTTTGAGACAT TATGGTATTTTTCGTCCATGTAGCCGCCATCACCTAGTAGAGAAAGGTTTTGATTGTTGTTTTTTTTTTCTGGTTTTCTG ACATTTATGCAGCTTTGTCTGTATATGTTGCATTTTTTTTTTTTTTGAGAACTCTCCGAAAGAATAGCTATGATATTAAG GATTCCTTGTTAGAATGAAAAGCATATAATTCATGTTGTACACTTACTTTCTTTGGTCATCTTATGATCTTCATTTCAAA AAAAAAAAATCTTATGATCTTACTGATCCTATTACCACTAAAGTTGATGGGATTCTGTTGTATTTCACGAGTTTTCACTT TTCAATATATGTGGGGTTTGATGGTAGATTGTATTTGGGTTTTGATTTTAGGTTTTAGAGGAATAATGCTGAGGAGGTAA TCATTTGTTGACAACCATAACTTTCTTGTAATAGTTTCCTTTCCTTACTTCTGCCTTTGTTTCTAGTGTTCTATGTTCAA TGTACTGTTATTTACTTATAGTATTGTGCTAATAAATCTAGCATAGTGGTCATATTAACAACCAACTGCTTCTTTCTTAT GTGGAAAGTCTTATAATGCTTCAAACTTATTGTGTTTACTGGAACTTCTTTTTCATTCTTAAGGGAGGATTTTCGTAAAG AATTTCAAGTGCAGAATCCAGATGTAAAGACAATGCGTGATGTATGTATAGAATCCTCTGTATCAATATTTCTTCAAATT TAGTTTATAATTTTTATTGCTTTTAAAGAACAATTGTGGACAGTTGATTGTTTATAGACTTTCAATTTCGAAAAACAATA TAAAAGTTGAGCATCAGTTTTAAACAAAGTTAGCAGTTGTTTTAAGAGTTTGTGAGAAGTTTTTATACTTTGTTGTGCAA GTAACAACTCTGTAATCATATCAATTTGTCTCGTCATTACCTGGAAATGTAATTCTATTTTGGTTTTTTTCCTTCCTGTG CTCATTCAGATTGGCAAGTCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGTTAGTTTTCTTCTTTAGCTTCTCCT GTTCTTATTTAACCTGAATTGCATTGTTATGATTGTTATGTTAGATGGCTGAAAACAGAGTAGATCATATGCTGAAGTTC CAACCTTGGCTGAGGGATTTTATTTTTCAAACCTTCTAGGCTTTTAGTGTGGCTGAACACTTGAACTTGATTGATATGGC TTTATCACGACTTGTGCAAATATGGACGAATTAAACTTTTTACAAACCATGTGAAGAACAAGTTTTTGTTATGTGTAAAA CAGTTGGATTCATTATCATTACTTTGGTCTATGTTGATATAAAATTTTGGAATTCAGCTAGTGCAATGCAAGTGTCAGAA CTGTGCCCTCTGATTGAGATTCTGTGCTGCACATTGGTTTAATGCATTATTAAATTTAGAAGGTACACTGATGCAGACTG TAATCTTAAAGTATGTCATTGTGTACATACTACACTGCATTTTTTAAGGGGAAAGTATATTCAGCATTGATAACAAAAAC AATGGCTTTTATCTTCAATTTGTTATTGAATATTGATTGAGGGTGTGTTCTTTTGATTTTGGTGTTGTATTGGTCTTGAT GACTCTAAAAATGGTATCTGTGTAGGCTTGTATTCATTGCTGTATTAACTGCAGCAAAGGTTGATTCAGTTCTTCATTAG AATGTCTGCTCACGGTTTCTATGTCTTTGCAATTAATATGTAAATCATGAAAATCAGATGCAAAAGAAAAGAGAAACAAG AAAAGAGAAGGGTTCAAACGTGTTGGTGAATCTAACTTGCAATTGAGGCGCATGGAGTTAACATAGCTTTTTAGAAGAAA CTTCTTGCTTCTTACTTGTTCTTGCTTGTTTGTTCCTTCTTTTTCTTGGTTCTTGCTGCTAGCTTCTTGGTTCAATACTA TGTTAATAAAGCTGGTATCTGACAGGAGAAGGTTCAATACTATGACATAGCAACAGAAAAACGTGCAGAATTTGATAGAG CAATGACAGAATATAACAAGAAAATGGTGAGCAATCTATCAAATAATGTTCATGGCTATTGTGTTTATCTCTTATTTGCC CAGTTATGAGATGTACAATTTGTTTTCTGCTGTTTCTCAGGAAAGCGGTGAATTTGAAGATACTGATGAGGAGTTAGAGT TTTATGAGTAAAGCCATGCAAATCATTTTGGTAACTTGGAAACCTCGATCTGTATTAATTGAAACTACCTTGGAATTCAA AGTTGTATATTCAGTCTTAGTTAGCTCTACTTTGTCCTTGTGAATAATTATAATTTTTTTTTGTGTCAATGTGTAAAGTA CTTACTTTAGGTGTATTTTGCAGCTTTGGGCTTAATCAATTGGGCTTAATCAATTTTTGTTTAAATATTATCAATATAGG TGCTTGAACTTGGTAAAACATTTATGGTAGAGTATAGTAGTATTCAGTATTAATATTAT
CDS sequence (LotjaGi4g1v0024600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCAAACGGCTAAAGGCTCGTCGTCGTCGCAGAACAACGTTTCTCACTCCGCTTCTCCGGCCACCGTCTCCGCCTC CTCCCGCAAACTAGTGTTGAGGGTTAAATCAAGTGAGCAAATGAAGAGATCGGCGCAACAGACTAAGTCAACAAAGAAAC CCAAAGCAAAGCAAAAGACGAGCAAACAAAGGATTGACGCTAACAAGCCAAAGAAGCCCCCCACTGCCTTCTTCTACTTC TTGGAGGATTTTCGTAAAGAATTTCAAGTGCAGAATCCAGATGTAAAGACAATGCGTGATATTGGCAAGTCATGTGGAGA GAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGACATAGCAACAGAAAAACGTGCAGAATTTGATAGAG CAATGACAGAATATAACAAGAAAATGGAAAGCGGTGAATTTGAAGATACTGATGAGGAGTTAGAGTTTTATGAGTAA
Protein sequence (LotjaGi4g1v0024600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVQTAKGSSSSQNNVSHSASPATVSASSRKLVLRVKSSEQMKRSAQQTKSTKKPKAKQKTSKQRIDANKPKKPPTAFFYF LEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIATEKRAEFDRAMTEYNKKMESGEFEDTDEELEFYE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| MobiDBLite | 1 | 73 | 73 | - | – | |
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 5 | 158 | 154 | 2.6E-59 | – | |
| PANTHER | 5 | 158 | 154 | 2.6E-59 | – | |
| Gene3D | 34 | 143 | 110 | 7.0E-22 | ||
| SUPERFAMILY | 57 | 148 | 92 | 3.4E-22 | ||
| SMART | 69 | 140 | 72 | 4.1E-19 | ||
| ProSiteProfiles | 70 | 139 | 70 | 17.295 | ||
| Pfam | 70 | 139 | 70 | 5.9E-18 | ||
| CDD | 70 | 135 | 66 | 1.90515E-14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0024600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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