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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0025400 |
| Transcript ID | LotjaGi4g1v0025400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CAS1 domain-containing protein 1; TAIR: AT2G34410.1 O-acetyltransferase family protein; Swiss-Prot: sp|Q66GQ5|RWA3_ARATH Protein REDUCED WALL ACETYLATION 3; TrEMBL-Plants: tr|A0A1J7HEI2|A0A1J7HEI2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0025400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3105706..3111031) extracted from Lotus japonicus Gifu genome v1.2.
TCTTATGGATCTTTGCTTATTTTGCCTTCAGGTGTCTTTCCTGCTGGGAGTTATTCCAGTTTTTATTACATGGATATATT CAGAGTACTTAGAGTACAAAAAAACTGCATTTCCTCCCAAAGTGTAAGTTGTTAGCACTGTTGTTGCAAAACAGATCATT GGCTTAAACTGTTTGGGTTTCATTAGGTCTTAAAGTCTGTTTCATCTTGTGATTGAATTGATGTACGTGAAGAGGGTGAT CATGATGTAGTAGATTGCAATGGTATTAATGCATAGAAATCTTGTAGTGGCACTTGATGGTACAGCAATGTTGTAATCTG CATCAGTAAAAGAAAAATCTTTTAAATAGGTATAGTTGAGGTATTTGGGAAACAGTAGTGGTTCAGAAATCTGGTAACAG CATTTAAAATAAAGTATACAGCACCCATTTTGTTTACGGGTCTGAAACTGCACTTGCCCCTTTACTTGAAACACATAATA ATATGTACTTTACCAACTGGATACTTCATATTAGTATATTTGGAAAAAATGGAGATTAACATTTAATAAACAATCACATG CTTCTTAAAGCTTTGAACTTTGGATAAAAACCCCAGTAGTGTTTAGTCTAGCTAACATACATGAACACTTCATGTCTGAT ATACGCATCAAAATTACTTGTATTATGCAATCAAAGTTGTTGAAACATTGAGAATTTGGCATCATAGAATTGCATATTGT GTGCATAAAAGTATTTATCTGCAAATATTTTCTGATGCTTAACAAATTCTCCTGATGGGCTGCAGTCATTCAGATACTAG TCTTGATGAGTTAGGGAAGGATGCAATCAAGGAGGATGATCGGGCCATTTTGCTGGAAACAGGGCTTCCAAGATCAGCAT CAGCAAAACTCCATGCATCATCTGTCAAATTGAATTTGATTCGGTCATTTTCTATGATACTCAATGTCAAGGGATTCTTT TCAGTTTAATACTTTTATCTTTGAAGATTCTTACCTTATTACTTGTTCTGTTTAGGTTCTTGACTATGGATGATTCTTTC TTGCTAGAAAATCGAGCAACTTTGAGGGCAATGTATGTCATTTTTATTTGAACGACTCATGTTATATGTTCCACTCCTTC CGAATTCTGAAAACTTAAAACCCATTTTGTAGGTCTGAGTTTGGGCTGATTCTGTTTTATTTCTACGTATGTGATAGAAC CTACATACTTGGAAATTCTACCAAGGTACTTGAATACCAATTATATATTTCTGCCTGTTTTTGTTTCAAGCTGCAACTTG AAATATTATTATACTTGTATAGAATTTAGATATGTGCTGTGACACGGGCTTGATTTGGAATACATATATCACCTGTATAT AAAGACATTTTATTCAAGGAGCAGCAGTGTATTACATATTTAAACCATTATATGATTAAAAAATTGCCATTTGTAGTAAC TTTTTTGTTTTTACTTTCTTTTCCTTCTTTCTTTTCTTTTGACAGAATTACAACCGGGATCTTTTCTTGTTCCTCTACCT TCTTCTGATCATAGTTTCAGCAATGACTTCTTTGAAAAAACATACTGACTCATCGGCATTTTCTGGAAGAAGCATACTTT ACCTTAATCGGCATCAAACAGAAGAATGGAAAGGATGGATGCAGGTGGGTGCTCCTTTTGACTGATGTGAAAACTTGTAA ATAGAGATGTTATACCTATGTTCGCTTCCCAAAAAGTTATGGTTAAAGTATTAGCATGACCTTTTCTTTTCATTTATAAT TTAGTTTGAAACTAGCGTTGTTTTACTTGCTACAACTTGCCAACTGTGAAAAATTATCTGTTTCATTTTGATGTCTCATT TTTTTTTACATTTGTAGTTCATTGATTATAATTTATAGGCAAAACCATCTAGAGAGATATAGAGGAAAGTGGCCTATCTT AAAACTCAATACATGTTCGTCATTATGGCATTGTTTTGTCCATGTAGCCGGCCCTATCTTATAGGAAAGGATTTGATTGT TGTTGTGGTTTATGTATTATAATTGATATGTTAGCGGATGCCAAGTAGAAACTGTGGAATACTGGATCTATTTGATGTTA TGTAATGGAAATCAAAGCTTTTAGTTATTGAAATGAAACTAAAGTCAATGCAGCTTAAAGTAGTTGTACTGCATATTACA TTCAAATGCCATAATGCATCCAAAATGTTTTGAATTTGTCAGATACCTATAACTATTGTTCATATTTTTGTTCCATTTTC CAGGTCCTCTTTCTAATGTACCATTATTTTGCTGCAACGGAGATATACAACGCAATACGTGTTTTCATTGCAGCATATGT TTGGATGACTGGATTTGGCAACTTCTCCTATTATTACATCAGAAAAGATTTTAGCCTTGCACGCTTTGCTCAGGTAACAT AGAGTTCTTGACCTTGAATATGATTTTTATCTTATGCACTATGTACTCTGAACCCTATACTCTTTTTGCCCATACAATAT CCCTAACTCATTAAACTGTGGTGCAGATGATGTGGAGGCTTAATCTTTTTGTGGTCTTCTGTTGTATTGTTCTTAACAAT GACTATATGCTATATTATATATGTCCAATGCACACGCTTTTCACTTTGATGGTGTATGGAGCATTGGGTATATATAGCAA GTACAATGAAATCAGCTCGGTGATAGCTGCAAAGATTCTGGCTTGCTTTCTTGTGGTGATCTTGGTTTGGGAAGTACCTG GAGTCTTTGACTTAATCTGGGGCCCATTTGCAATCTTTTTGGGTTAGTACGATACATAATAGTTTTCTTCTGTATAATTA GCTTGCCTAGGTATATTTGTTTTGTTGTGACTTTTTTTACTGAATCATCATACCTGAGCTTGCCAGCTGGTTTCATGCTA AGTCTTGAATCAGTTTTTTCCCACTTGTGGCCACTATTTTGGGATTTGAACGGTTTTATTGTCTTTGAAATTGTGGAATG TGGAGGCCTCCTCCTCTTGTTGATTGTAATTATTGCCAATGTCATAAAAAAACATTGTTGCTAAAATGACCATATATTTA TTTTTAGATACTTTCTTACATTAAAAAAATTGCAGACACTCTCACACTCGAGCAAATACTTCAGTACTTCTGTAGTGCCT TAGAATACTCAATGCTCCCTTTCTCACATACAAACAGTTATTTCCCACTTTTATTTAAAAAAATATGAGCCAATGACTAA TCATAAAAGGTGGCAGCATTATAGATAATGTAGTGTGTACTATTGTAGCACTGGAGAAAAAAATTCCTCAAACTCTCTCA GTGCAAGCTTTTGTATGTAGTGTTTATGCAAGTTTCAACTTTCAAGTTAATTTGCCAATATACATGCTTTTTGCTGCAAG TGCATAATAGTAATCTTTATATGGCAGGTTATACGGATCCTGCAAAGCCTGATCTCCCTAGAATGCATGAGTGGCATTTC AGATCTGGGCTTGATCGCTACATATGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATGTAATCTCATGTACTAG CTTGTGTGGTGGGTACTGAATATTTTTTAAATAATATCCAGAAATTTTAAATTTTAAATATTTTACTATTTCAGGTTGAG AAATGGATGGAAAAATTGGAAGAGTGTGAATCCAAGAGGAGAGTAGCAATCAAAACCAGCATTGTTTCAGTTTCTGTATT TGTGAGTTACATGTCTTTTGACAAAATTATTGCTTGGATTACTCATGGTTTTCGCTTCTCTTTTTATGTTGTTACTTCAA TTTTCTCTGATGTAGATAAAAAAGGGTAAACAAAAAAGTTAATTTTCATCTTTCTTTTCTAGGTTGGGTACTTGTGGTAT GAATACATATACAAGCTGGACAAGGTTTCATACAACAAACTCCACCCCTACACCTCATGGATTCCTATTACGTGGGTGTT ATCTTCTTCACTTTTACCTTTTTTCCAATTCTTTATGTTTTTTTTTTTATTTGTGTTTCCTTCCTTTCAGCTTGAAAGAT AGCAATCCTAGAACTGCTATTGATCTTTTTTTTAATTTTTTTTTTCAGTGTTTACATTTGCTTGAGGAATTTCACTCAGC AGTTTCGGAGTTTCTCTTTGACCCTCTTTGCGTATGTGTTCATTATCTTAATCATTGAAATTCCATGTTGATTGGTTTTG ACACCAACATTTCTACTAATTTCCATTTCTTAATATCTCCATTTCTGTATGGATTTTCAGGTGGCTTGGCAAGATTACTT TGGAGACTTACATTTCACAGTTTCACATTTGGTTGAGGTGTGTATGCATATCGATTGTTTTTGTTCACAGCTATTTACTA AGCCTCAATTATGTTATAATTATGAGAGTAGGTTTTGGTTTTCTATTACATCGGGCTATGTGATGCCAATATACATTAGC AATTCTGAAAGAGTTATCCTCAATCCTCAAATCCTTTCATGTGCTCTTTCATACGTCCGTTTATAGATCCAGTCATCCAG CTCAATAAACTTTGGAGTCAGCTAATTTTTTTGATTTCTAGATCATGGATTCTTGTCAATAGTGGCTGAACAAGATGTGT TCTTGATAACTTCCTCTTTGCATGCAGGTCGAACACGCCCAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCAGAGT ATCCTATGCTGAACTTCATGCTTACTACTGCTATATACGTCTTGGTATGGATCTTCTTTCCTTCTTTCTTCTGTTCATAT TTTATTTTCCTTATGGGTCTTGTTAATGTATGTTAAAGAATCAAGAAATAGAAAATATCTATTGAAAGTAAAGCATTCAA TACATTGATAAGGTTAAAGAGTAGTACTTTTTCATAAATACTTCCACTTTTGACTCCTTAACCAGTGTCCTTAGGGCAAT TTTTACCATTTGTCTTGTTTTATTTATCTTCAAGTCTCATGAAAGGTTCCATACTAAATTACAATTTTTGTTCTGATCTG CTATGTTGAAATGGTTTTGCAGGTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGGCAGTATTCATACCCACAA AGGACAATCGGCGGCTGCTGCATAATTTTATTACTGGGGTGGCCATCTCTGTTACCTTGTATTGCGTCTCACTTATTCTG CTTCAGATTCCTCATTCAATGGTAAGTCTTTGTTTTCTATATAAAGGGTTTATGGAAAGTCTTGGGGAGGGATAATTACA TAGTGTCCGGGGTGTTTTTTTTATGTCCCTTTAATGCCTTGGCAATGAGTAATTGAGTATCAAATTAAGTTTTCTAATGT TTGTATTCTTAATAATTGGAATTCTTTTTCACACTGATAGGCTTGA
CDS sequence (LotjaGi4g1v0025400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTTTGCTTATTTTGCCTTCAGGTGTCTTTCCTGCTGGGAGTTATTCCAGTTTTTATTACATGGATATATTCAGA GTACTTAGAGTACAAAAAAACTGCATTTCCTCCCAAAGTTCATTCAGATACTAGTCTTGATGAGTTAGGGAAGGATGCAA TCAAGGAGGATGATCGGGCCATTTTGCTGGAAACAGGGCTTCCAAGATCAGCATCAGCAAAACTCCATGCATCATCTGTC AAATTGAATTTGATTCGGTTCTTGACTATGGATGATTCTTTCTTGCTAGAAAATCGAGCAACTTTGAGGGCAATGTCTGA GTTTGGGCTGATTCTGTTTTATTTCTACGTATGTGATAGAACCTACATACTTGGAAATTCTACCAAGAATTACAACCGGG ATCTTTTCTTGTTCCTCTACCTTCTTCTGATCATAGTTTCAGCAATGACTTCTTTGAAAAAACATACTGACTCATCGGCA TTTTCTGGAAGAAGCATACTTTACCTTAATCGGCATCAAACAGAAGAATGGAAAGGATGGATGCAGGTCCTCTTTCTAAT GTACCATTATTTTGCTGCAACGGAGATATACAACGCAATACGTGTTTTCATTGCAGCATATGTTTGGATGACTGGATTTG GCAACTTCTCCTATTATTACATCAGAAAAGATTTTAGCCTTGCACGCTTTGCTCAGATGATGTGGAGGCTTAATCTTTTT GTGGTCTTCTGTTGTATTGTTCTTAACAATGACTATATGCTATATTATATATGTCCAATGCACACGCTTTTCACTTTGAT GGTGTATGGAGCATTGGGTATATATAGCAAGTACAATGAAATCAGCTCGGTGATAGCTGCAAAGATTCTGGCTTGCTTTC TTGTGGTGATCTTGGTTTGGGAAGTACCTGGAGTCTTTGACTTAATCTGGGGCCCATTTGCAATCTTTTTGGGTTATACG GATCCTGCAAAGCCTGATCTCCCTAGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATATGGATAATTGG AATGATTTATGCCTACTTTCATCCAAATGTTGAGAAATGGATGGAAAAATTGGAAGAGTGTGAATCCAAGAGGAGAGTAG CAATCAAAACCAGCATTGTTTCAGTTTCTGTATTTGTTGGGTACTTGTGGTATGAATACATATACAAGCTGGACAAGGTT TCATACAACAAACTCCACCCCTACACCTCATGGATTCCTATTACTGTTTACATTTGCTTGAGGAATTTCACTCAGCAGTT TCGGAGTTTCTCTTTGACCCTCTTTGCGTGGCTTGGCAAGATTACTTTGGAGACTTACATTTCACAGTTTCACATTTGGT TGAGGTCGAACACGCCCAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCAGAGTATCCTATGCTGAACTTCATGCTT ACTACTGCTATATACGTCTTGGTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGGCAGTATTCATACCCACAAA GGACAATCGGCGGCTGCTGCATAATTTTATTACTGGGGTGGCCATCTCTGTTACCTTGTATTGCGTCTCACTTATTCTGC TTCAGATTCCTCATTCAATGGCTTGA
Protein sequence (LotjaGi4g1v0025400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLCLFCLQVSFLLGVIPVFITWIYSEYLEYKKTAFPPKVHSDTSLDELGKDAIKEDDRAILLETGLPRSASAKLHASSV KLNLIRFLTMDDSFLLENRATLRAMSEFGLILFYFYVCDRTYILGNSTKNYNRDLFLFLYLLLIIVSAMTSLKKHTDSSA FSGRSILYLNRHQTEEWKGWMQVLFLMYHYFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIRKDFSLARFAQMMWRLNLF VVFCCIVLNNDYMLYYICPMHTLFTLMVYGALGIYSKYNEISSVIAAKILACFLVVILVWEVPGVFDLIWGPFAIFLGYT DPAKPDLPRMHEWHFRSGLDRYIWIIGMIYAYFHPNVEKWMEKLEECESKRRVAIKTSIVSVSVFVGYLWYEYIYKLDKV SYNKLHPYTSWIPITVYICLRNFTQQFRSFSLTLFAWLGKITLETYISQFHIWLRSNTPNGQPKWLLSLIPEYPMLNFML TTAIYVLVSHRLFELTNTLKAVFIPTKDNRRLLHNFITGVAISVTLYCVSLILLQIPHSMA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 3 | 25 | 23 | - | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| PANTHER | 9 | 535 | 527 | 0.0 | – | |
| PANTHER | 9 | 535 | 527 | 0.0 | – | |
| Phobius | 26 | 99 | 74 | - | – | |
| TMHMM | 100 | 118 | 19 | - | – | |
| Phobius | 100 | 117 | 18 | - | – | |
| Pfam | 100 | 511 | 412 | 4.1E-98 | ||
| Phobius | 118 | 136 | 19 | - | – | |
| TMHMM | 135 | 152 | 18 | - | – | |
| Phobius | 137 | 156 | 20 | - | – | |
| Phobius | 157 | 176 | 20 | - | – | |
| Phobius | 177 | 193 | 17 | - | – | |
| Phobius | 194 | 198 | 5 | - | – | |
| Phobius | 199 | 221 | 23 | - | – | |
| TMHMM | 199 | 221 | 23 | - | – | |
| Phobius | 222 | 232 | 11 | - | – | |
| TMHMM | 233 | 250 | 18 | - | – | |
| Phobius | 233 | 248 | 16 | - | – | |
| Phobius | 249 | 253 | 5 | - | – | |
| TMHMM | 254 | 276 | 23 | - | – | |
| Phobius | 254 | 275 | 22 | - | – | |
| Phobius | 276 | 286 | 11 | - | – | |
| Phobius | 287 | 313 | 27 | - | – | |
| TMHMM | 289 | 311 | 23 | - | – | |
| Phobius | 314 | 332 | 19 | - | – | |
| Phobius | 333 | 353 | 21 | - | – | |
| TMHMM | 338 | 357 | 20 | - | – | |
| Phobius | 354 | 372 | 19 | - | – | |
| Phobius | 373 | 393 | 21 | - | – | |
| TMHMM | 378 | 395 | 18 | - | – | |
| Phobius | 394 | 404 | 11 | - | – | |
| Phobius | 405 | 423 | 19 | - | – | |
| TMHMM | 405 | 424 | 20 | - | – | |
| Phobius | 424 | 434 | 11 | - | – | |
| TMHMM | 431 | 453 | 23 | - | – | |
| Phobius | 435 | 454 | 20 | - | – | |
| Phobius | 455 | 473 | 19 | - | – | |
| TMHMM | 473 | 492 | 20 | - | – | |
| Phobius | 474 | 493 | 20 | - | – | |
| Phobius | 494 | 512 | 19 | - | – | |
| TMHMM | 512 | 534 | 23 | - | – | |
| Phobius | 513 | 536 | 24 | - | – | |
| Phobius | 537 | 541 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0025400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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