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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0025800 |
| Transcript ID | LotjaGi4g1v0025800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S proteasome non-ATPase regulatory subunit family protein; TAIR: AT1G64520.1 regulatory particle non-ATPase 12A; Swiss-Prot: sp|Q9SGW3|PSD8A_ARATH 26S proteasome non-ATPase regulatory subunit 8 homolog A; TrEMBL-Plants: tr|A0A0S3R0N9|A0A0S3R0N9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0025800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3172357..3176213) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAGGGAAAGCACTGCACCATCCGTCGTCGTTTCGTGGTTCTCTATTACTCCAAGTTTGTCGTTGAAAGCACTCAACC TTGTGAGAGAGTGCAGGTGAAGAAGGTAAAAGAACGAAGCAGAGATGGATCCAAAGCTAACCGAGGTTTCCCAGATCTTC GATCGCTTCAAGGCTGCGTTTCGCCGGAACGACTTCGATAACTGTTCCGATCTCCTTTCTCAGCTCAAGGTATATTTGAT TTCCCTCCCTACCCAAAACCCTAGTCCTTGTAATTACCCTAATTTCGAAAACTGTTCTTGATGCCCTTTGTTGTTCGTTC AAGATTTGAGTAAAATGATTGTGAATTGGAGTGAATTTCTTCAGCATGAGATCATTGTAGCAATTGTGCATTCTGGGTCA GATAGATTCATTACAGTAACACCCTTCATGCTATTTTTAAGATTTTATTAGTTACCTAGTAACCCTATGGGTAATTATTT ATACTGGGTAGTGAGAAACTGAGCTTTACCTTTCATAGGTAGTAGTAGTATGGTGATGGATTAAAGTGTAGTAGTTTGCT GGATTCAAATATTTATAGTATGACCGCCAACCGTGTAGATCAACTGGGGGTTGTTCTAGCTCAGTGTTATCAAATAGCGG CTATACGCCGCTATAGCGTAGGGGATTTAGGTCACGGGTTCAAATCCCGTCTCCGCAACATTTTTCACAAAAACAATCGC GACGCCGCGATTGCCCACTATAGCGCGCTATTCCCGCTAAATAGCGGCCGAAATAGCGGATTTTTGGCTCACCGCGATGG TCCACATTCGCGACTTGACAACACTGTTCTGGCTTCAGCAGAGTCTCGGGTTCGAGCCTCTGTGAATGCAGCTGCATTAA ATACTTGGCAGGGAGAACTTTGCTGCCTATAGTGGTACTACCCGGCTCAAAATCGAAATTGCGAAAGCAATTAAATACAT CCAAAAAAAAGAAATATTTATAGTATATAATCTATTAAGGAACGTATTACAGCAGGAAGTTGGATGATTAATTTAATTTG TAAGCTCCCCCCACTATGGATGATCAATTGGGATTTTATGATTATTGCATGACATGCAGCTTGAATTCATAGCTTTGATT TATACAGTTTAAAAAATTGTATTTTGCTTTGTCTTAACTTCCTTCTTTCTGGGTAGAGGGTACATAGTTGCAGTTTTTTT TGTTATAATATTTGTGTAAGTTTTGAGGGGCTCTGTTTACTTGCAGGTGTTACTAACAGGGTTCAGAAGCCTTCCACCGT TGTTTGAAAATACACCTAATGCAGTTCATGAGTTAACAATTGCAAGTAATATTCTTGATTTCAATCAGTTACTCTGGTCC TTTCCCCTTTTTCTTTGTTCATTTTCCAACCTTCAATGTTAGCCTACTTATTTGAATAATAAAAGCAGATACTCTTGATC AACCATTATTCAAGTGGATCTTGAATTTAGTTGATATTGTAAAGGGGATTTTATTGGACCAAGTTAGCTATAAGCTCTTT GAGATTGACAATGGAGTTCCTCTTCCATGCCTGCTGTGGATCCCGTTTTGTTCTTAAAACTGTTAGTGAGAGAACTTTGG TACCTGGTTGTGTTGAAAGTACTGGTTCGGCTTTTCCATACCTTATGCGGTATGGTTAAAATGGTTTACCGTATATTAGA AGAGAGAGAAAAGAAATATAACTGTTCTTTTGACAAATTTATTTTGGAAAGTGTTAGATGCTTCAAGGAAACAAAAAGTT GAGCCTTGTTGATTAAGCCAAATAATATGCTAAATCATCTCTTATGATTGAATCATATTAATATTAGCATGAATGAGATG ATAATTGCTTAAAAAATAAATAGAAAAAAAAAACCAGGATTCCTGTTTCTGAGATGTTTTTTTCCCTGTTTTTCAAATTT TCAGGGGATATATACGAGCATGCTGTCGTCCTCAGTGTGAAAACTGAGGATCAAGATGCCTTTGAGAGGGATTTCTTCCA GCTGAAACCTTATTATACAGATGCCAGGTAACTAATGCTTGCCCCTTTATTTACGTGTACAAAATGTGTTTCTACATTGG GGCATCTTAATCTGTAGCCAAAACAATGGACATTTCCTGGTCACTTAACTTAAGCTTTATAATATATCTTTATTAACATA TTAGTAGTATCTATGTTGGATTGTGTTTATACATGCAATTTTTTTATTTTTTCTTTCTTGTTGAGTTCTTGTAATTAATG GGGACTTTTTCTGTGGTGCAGTAATCGTATTTCCCCATCTCCTCAGGAGTACCCAATACTAGGCCTCAACCTATTGAGAC TACTTGTCCAGAATAGGATTGCTGAATTCCATACTGAGTTGGAATTGCTCTCATCCGCTGCTCTAGAGAATCCTTGTATT AAGCATGCTGTGGAGTTGGAGCAATCTTTTATGGAAGGGGCTTACAATCGCGTCTTAAGTGCTCGACAGACAGTGCCACA TGATACATATGTTTATTTCATGGATCTTTTGGCCAAGACAGTCAGGTAATAATTGTTATTAATATTTCTTATGGCCCAGC AGATGATTGAGTTCAAGTGGTTAGCTAATAAAACATGATACTCTAGCTATATTTCTTAACTAGTTGGTTATAGTTAGATT GTTTTGTATTCTATTCTTATCTTCTGAACTGATTTCTAGAGTATTCTTATTAAATTCGATAAGTTACTTAATAGTCTTTT GATTCTATTCTTTCTTTTTTCCTGAAATGGGGCTCTTATATTATTTTAGATTTTACGAAATACGAATCTATATTTATTTT CTAATCAGTTCATATCTCTCTTGAAACATTCAGAGATGAAATAGCCGGATGCAGTGAGAAGGCATATGACTATCTTTCAA TTAAGGATGCTCGGCAAATTTTGTTGTACTCCTCAGACCAGGAACTCTTGGAATATATTAAAGAGGTGAGCAATGTCATG ACTCTTGTTATCTTGTACATACATACATGCACTCTATATAGAGGGTATATGAGAGGTATTGATCTTCACTATACACAGGA CATGAATGAGTTTACTGATAGTATATTTACAAAATGGAAAATTATTCTTCCTTTATTTCTAAGTATCATTTTGTTCTAAA ATTATCATCTATTGAGTGCAGGAGCACCCTGAGTGGGAGATTAAGAATGGTTCTGTCTTTTTTCAAAAGGCAAAAGAGTC TGCACCATGCAAAGAGATACCCTCGCTCCAACTCATCAACCAGACACTTAGTTATGCTAGGGAGCTGGAGAGGATTGTCT GAAAAGGAATGCGATGGCTTGTGTTTCCAAATGCTCTAGGCGTTTGAGTAATAGTTTACTCATACTGTCTTTTGAAATTG TTCATTGCTGATTCAATGCGGAACTATAAAATGGTTAACCTCTGTCTTTTGGTCATCTAGGTTGCTGTATTGTTTATTGG GATACCTTTTCGTTTTTCCATTACTTGTGCTCTGGTAAAAGAAAAAAGAAAAATGATTCTCTACTTTGTCGACATCTATT TGTTGAGGATTCGATGACTGATTGCTATATTTGTTTCAGAATTAGGTAAACTTACGATTGATAAAAGTATGTTTGCTAGA AGTAAATTAAGAAAATAAATTTGTGTTTGGGAATGATATGTAAAAGTAGGTTTAAAGAAATGAATGTTATTTGTAGAAAT CACTTTTAAATATTATATTACTTTAGTAGACATATGAGTAGCTGCTATATAGATGGTGTATCGACATGGAGCTATGATAT ATACGCATCTCTTCACTTCTTTTCCACCTTCATTTTTTATTATTTCTCTTTTCTCTATCAACCAATTCACTTATCACATT CACATCTTTACTTTCTC
CDS sequence (LotjaGi4g1v0025800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCAAAGCTAACCGAGGTTTCCCAGATCTTCGATCGCTTCAAGGCTGCGTTTCGCCGGAACGACTTCGATAACTG TTCCGATCTCCTTTCTCAGCTCAAGGTGTTACTAACAGGGTTCAGAAGCCTTCCACCGTTGTTTGAAAATACACCTAATG CAGTTCATGAGTTAACAATTGCAAGGGATATATACGAGCATGCTGTCGTCCTCAGTGTGAAAACTGAGGATCAAGATGCC TTTGAGAGGGATTTCTTCCAGCTGAAACCTTATTATACAGATGCCAGTAATCGTATTTCCCCATCTCCTCAGGAGTACCC AATACTAGGCCTCAACCTATTGAGACTACTTGTCCAGAATAGGATTGCTGAATTCCATACTGAGTTGGAATTGCTCTCAT CCGCTGCTCTAGAGAATCCTTGTATTAAGCATGCTGTGGAGTTGGAGCAATCTTTTATGGAAGGGGCTTACAATCGCGTC TTAAGTGCTCGACAGACAGTGCCACATGATACATATGTTTATTTCATGGATCTTTTGGCCAAGACAGTCAGAGATGAAAT AGCCGGATGCAGTGAGAAGGCATATGACTATCTTTCAATTAAGGATGCTCGGCAAATTTTGTTGTACTCCTCAGACCAGG AACTCTTGGAATATATTAAAGAGGAGCACCCTGAGTGGGAGATTAAGAATGGTTCTGTCTTTTTTCAAAAGGCAAAAGAG TCTGCACCATGCAAAGAGATACCCTCGCTCCAACTCATCAACCAGACACTTAGTTATGCTAGGGAGCTGGAGAGGATTGT CTGA
Protein sequence (LotjaGi4g1v0025800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPKLTEVSQIFDRFKAAFRRNDFDNCSDLLSQLKVLLTGFRSLPPLFENTPNAVHELTIARDIYEHAVVLSVKTEDQDA FERDFFQLKPYYTDASNRISPSPQEYPILGLNLLRLLVQNRIAEFHTELELLSSAALENPCIKHAVELEQSFMEGAYNRV LSARQTVPHDTYVYFMDLLAKTVRDEIAGCSEKAYDYLSIKDARQILLYSSDQELLEYIKEEHPEWEIKNGSVFFQKAKE SAPCKEIPSLQLINQTLSYARELERIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 267 | 267 | 7.4E-118 | ||
| Gene3D | 5 | 238 | 234 | 9.3E-78 | – | |
| ProSiteProfiles | 79 | 251 | 173 | 17.703 | ||
| Pfam | 106 | 242 | 137 | 2.0E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Proteasome regulatory particle | A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes and unfolds ubiquitinated proteins, and translocates them to the proteasome core complex. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi4g1v0025800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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