Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0027100 |
| Transcript ID | LotjaGi4g1v0027100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fatty acid 2-hydroxylase; TAIR: AT2G34770.1 fatty acid hydroxylase 1; Swiss-Prot: sp|O48916|FAH1_ARATH Dihydroceramide fatty acyl 2-hydroxylase FAH1; TrEMBL-Plants: tr|I3T5U8|I3T5U8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0027100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3285202..3288834) extracted from Lotus japonicus Gifu genome v1.2.
TATAGGGATCAAACAATAAATATTGAAAAACATGGGAAGTAACCTGTAACAACAAAAGCATCCATCCAATCCAATGATCC AATCCATGAGGAAAACAACAACGTTTGACACTTGGACGCCAGGTCATGAAAAACCAAGGGTGGAAAAATCACTGTGTGGT GTCTGTTTTTGAATTGCTTTCTATTCTGAGCCAACCTGTTCACGTGCAATGCGCCAATACATAAATCACATCACCACCAT TTCCAGCTTCAGATTCAGATTCACAACTCAAGACTCCCTCTCTAACGCGCCCAAGAGGGAGCACCACCACCACCACCACC ACAACCACCACCGCTTTGAATCTCACCTCATTCTTCCCGGTTCGTTTCATTTCACTCCCTTTTCATTCTCTCATTATTGC AATTTCCAGATCTGATCCTCATTGTTAACAGATTTTGATCCTTTCTTTGTTGAAATTGTTGAATTGTTCAGTGGTTGCAA GATGGTTGTGCAGAATTTTGTTGTTGATTTGAACAAGCCCCTTGTTTTCCAGGTAAAGTGGAGCATGTCTTGTTTCAACC ATGCCCATCTTTCCCATTACTTGTTTCTCAAAATAAGTTTCAATTTTTCACAGGTTGGGCATCTTGGAGAAGCCTATGAT GAGTGGGTTCACGAACCTATCATAAGCAAGGAAGGTCCTCGTTTCTTCCAAAGCGGTGTTTTGGAGGTACCCATTTAAGA GTTCCTTCAATTTTTCAAGTTTTCATGTTGAATTTATGAAATTTTAGAGTTGTATTGGTGTTTGGATCAGCTATTCATGT GCACTGCTTGGTGGGTGATTCCCATTAGGCCATTTAAGAGTTTAATCAGATTCACATAACAAATGTATAGGCATAAGTGC ATAACAAATGTATAGGCATAATCAATGTATATTCATTTATAAGAAATTTCAAAATTTTCACATTTAATTAATTCTTGAGT TGTTTTGGTGTTTGGATCAGTTATTTACGCAGACTGCTTGGTGGGTGATTCCAATTATTTGGGTGCCGGTTGCATCTTGG TTCATTTCTGGCTCTGTGAAAGCTGGCCTCCCTTGTTCTCATGTGGCTCCTCTGGTGTTTCTTGGCATTTTCCTTTGGAC ATTGGCGGAATACTTGTTGCACCGTTTTCTTTTCCATGTTAAAACCAAGAGCTATTGGTTAGATACATCTATCTTACACT TTTATTTGATTAATTGTACCTACATTGGTTTTTGTGATGCTGAAAACTCTTCCTTTTTGTTGGTTTGATGTTGTTGCATC AGGGGAAATACCTTGCATTATCTTATGCATGGCTGCCACCATAAACACCCCATGGATAGCTTAAGACTTGTTTTCCCCCC AGCTGCTGCCGTTATATTAGCTGTGCCGGTATCTACTTTTCACCATTTTATGCAAGAAATTTTATTTTATGAAATGATTG ATCAATCTGCTAGATATCTATGGTGATATTGTTGAAATCTAGGGATACTTTATTGCAGTATACCAGTAGTTTTCAGGTAT AACTTATGATAAGAAGCTCCATGAATTAATGTTTGTATTTTTGTCTGCTTTTTCCAGATCTGGAACATTGTGAAGCTTGC ATCAACCCCTTCAACTGCTCCTGCTGTGTTTGGAGGTATTCTTTTGGGCTATGTGATGTATGATTGCACCCATTACTACT TGCACCATGGTCAACCAAAGACTGAAGTGCCTCGAAGTCTTAAGGTAAAAGCACTTCTGCTCATTTGACTGTGGATGATA TTTAAATCACAATTCCTTGCTCCAATGTGTTTGCAAAATCATCTTAATCTTAATTAATAAAAGTTGTATAACCTACCACC ACAACCACATATATTAGTTGATACCAATATTTAATTTGATTACTGATTGAAGGACTTCGAATTCATAGTTAGTTAATGCT GATGCATTCTTTTTCTTTATATTTTTACTTTTGAGTATCTGAAACTTGGATCACTAAACACGATATCATTCTTCTCTCAA CTCTTTTAAGAGATTTCAATCCTCTCATTTCCTTTAGGAACAAGAGTGTCTTCTTTAGAGAAGACAAACAGCTCCTATGT AGAATGTGATGGTGCTTAAGTCCTTTATATTTTTGTTTTGTTGCACATTTCTGCATGATGCATTAGCAATTATCTTAATC TTGCAAATAAGAAAAAGACAAATAACTGTTTCTTTGTTATTTTGCAGAAGTACCACTTGAATCATCACTATCGGCTCCAG AGCTATGGCTTCGGTATCACTTCACCACTATGGGATAAGGTTTTTGGAACGGTTCCTCCTCCATTAAAGGCGGATGCCAA AAGTAGATAAGTAACAGACAATGCTGCATTTGTTCATTGGTTAAGATCATAGCAGATTCAGGAGTTCAGACAAAAAAAGT CAAGAGTTCATGCTTTTTATTGTCTAATTTTTCTTTCTCCTTAATTGATGTTTGAGGGTTAATATGCCACCTTGTGTTAA ACATCCTGTAAAATTGTAACATGTATCAAATTCATAGTATAAAACTCTCCTATTTGGGCACAATCCTTTCTCCTATAACT TCGCTCTACATGAGCCCTTGGTGCTTGGTGTTGGTTAACCTCTACTTCCAAAGAAATCAAGAAATTCAGTTACTGTAATT TCATGATAGGCAATGAGATAATGCTATTGACGGTTTTGCACATTGCTACACAGTACCCATCATCTAGGCAATTATTTTTT GAGGGGGAGGGAACTTCAGTTGCTGCTGATTCTTCATTCTTTAACTAAAATAAAACTTGCTAAGCTTAAGCAGATTATTA TTGGATACTGTTAGTTGGTTTCTGTTAGCTTAGTTAGTCTGGTAGATCAGGTAGTTGTTAGTTTTAGCTAGCTTAATTTC TGTTGGCCAGTTAGAGTTGCATATGTATTGTACTTCAGAGTAACTTTCTTATATATGTTACCTTTTGTTGTATCAATCAA TAGCACGAGGAAAATGAATGCGATGTACAAATTGTTCTGTCAATCTGTTTTCATTTTGTTAGCTTTTCTAAGATGGTAAG TGGTAACAGAGCCCTAATCAGAGCCCAGCCATCATGTTCTGCTACTGCAAATGGCCGGAAGTTTGAGTAGTCAAAGTTCA GATGTGCAAGGAAACTTGTCGACAGTGGTGGTTGTTTATCCTACTCAGAACCTGTCCATACTATATCATTGACCAAGGTC TAGGGGTGGTGACAAAGGTGATAAAGGGTACCAGGCAATAGCAATGGCGATGAAGATTAACAATTTGTAATGGCGGTGGT GGTTTTGAGCTGTGGATATGGCGGAGGATGCAGGGTGACAGTAGTAGAAGATGCACGGTGGCAGTGGCAAAGAGTGCCAA CCATCATAGTCGGGTGTTAGGTAGTTGCAACAGTGCTATGTGGAGGGTGCTAGACAATGAAGGTGATGGTTGATGAGGGC GTCAGACAATGCCGGTGGTGGAGTTGAGCGGTGGTGGTGGGTACTAGATGGCAATGGTGGTTGAGGGTGTTAGGAAGCGG TGGTGGGATGAAAGACTTCATTTTGTGGTGATGGCATTGGCAGGTATGAAGGAAAATGGTGGGGTGGAAGTATGACACAT TTTTAAAACTAAACTATAATAGAAAAACATTTT
CDS sequence (LotjaGi4g1v0027100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGTGCAGAATTTTGTTGTTGATTTGAACAAGCCCCTTGTTTTCCAGGTTGGGCATCTTGGAGAAGCCTATGATGA GTGGGTTCACGAACCTATCATAAGCAAGGAAGGTCCTCGTTTCTTCCAAAGCGGTGTTTTGGAGTTATTTACGCAGACTG CTTGGTGGGTGATTCCAATTATTTGGGTGCCGGTTGCATCTTGGTTCATTTCTGGCTCTGTGAAAGCTGGCCTCCCTTGT TCTCATGTGGCTCCTCTGGTGTTTCTTGGCATTTTCCTTTGGACATTGGCGGAATACTTGTTGCACCGTTTTCTTTTCCA TGTTAAAACCAAGAGCTATTGGGGAAATACCTTGCATTATCTTATGCATGGCTGCCACCATAAACACCCCATGGATAGCT TAAGACTTGTTTTCCCCCCAGCTGCTGCCGTTATATTAGCTGTGCCGATCTGGAACATTGTGAAGCTTGCATCAACCCCT TCAACTGCTCCTGCTGTGTTTGGAGGTATTCTTTTGGGCTATGTGATGTATGATTGCACCCATTACTACTTGCACCATGG TCAACCAAAGACTGAAGTGCCTCGAAGTCTTAAGAAGTACCACTTGAATCATCACTATCGGCTCCAGAGCTATGGCTTCG GTATCACTTCACCACTATGGGATAAGGTTTTTGGAACGGTTCCTCCTCCATTAAAGGCGGATGCCAAAAGTAGATAA
Protein sequence (LotjaGi4g1v0027100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVQNFVVDLNKPLVFQVGHLGEAYDEWVHEPIISKEGPRFFQSGVLELFTQTAWWVIPIIWVPVASWFISGSVKAGLPC SHVAPLVFLGIFLWTLAEYLLHRFLFHVKTKSYWGNTLHYLMHGCHHKHPMDSLRLVFPPAAAVILAVPIWNIVKLASTP STAPAVFGGILLGYVMYDCTHYYLHHGQPKTEVPRSLKKYHLNHHYRLQSYGFGITSPLWDKVFGTVPPPLKADAKSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 238 | 238 | 2.3E-146 | – | |
| PANTHER | 1 | 238 | 238 | 2.3E-146 | – | |
| Phobius | 1 | 48 | 48 | - | – | |
| Phobius | 49 | 70 | 22 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 71 | 81 | 11 | - | – | |
| Phobius | 82 | 101 | 20 | - | – | |
| TMHMM | 84 | 106 | 23 | - | – | |
| Pfam | 88 | 226 | 139 | 2.1E-16 | ||
| Phobius | 102 | 135 | 34 | - | – | |
| Phobius | 136 | 154 | 19 | - | – | |
| TMHMM | 136 | 154 | 19 | - | – | |
| Phobius | 155 | 165 | 11 | - | – | |
| Phobius | 166 | 184 | 19 | - | – | |
| Phobius | 185 | 238 | 54 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
| Biological process | Lipid biosynthetic process | The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0027100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…