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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0028500 |
Transcript ID | LotjaGi4g1v0028500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A072UNC2|A0A072UNC2_MEDTR G1-like protein; Found in the gene: LotjaGi4g1v0028500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3545377..3546640) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAAGTACAAAGTCTAAGATGCTATTAATTAGGGAAGCCAACCAATTCAAAGGATGAGTTTTTCTATATCTCCAATTA TTCCGTAACAACACACTATTCCCCACCACCTTAATTCACTCACCCCTCTATTCCCAAGATCACACATCAAATACAAAACC ACAAATTCAATATCCAAAAACTAAAAAATAGGGAAACCCAATAATTCCCATCATCCAAATTTCACAACCTTAACATGTCA GCCGCCGCAGCAGCCGCGGCCGCAGCCGGCGCCGCCGTATCCTACCGGAGCAACTCCCCTGAAAACTACAACCAAACTGA AGAGTTTTCACCATACACACCACCACAAACGACGCAATTCTACCCTGTTGCTCGTCCTCGTTTTAGCAGGTACGAGTCCC AAAAGAGACGTGACTGGAACACGTTCTGCGTGTACGTGAAGAACCACCATTCGCCATCATGTCACTGCGATGGCGGCGAA ATCGTTCTGGGTTTCCTCCGGTACATGGATCAGTTCGGCGAAACCCAGATTCACTCTGAGAATTGTGAGTATTATGGGGA TTCGTACCCACCTGGTCCGTGTCCTTGTCCTCCGAAGCAATCGTGGGATGCTCTTGATGGAATCGTGGGTCGGTTGCTTG TGGCGTTTGAAGAGAACGGTGGGTCGCCGGAGATGAACCCGTTCGGGGAAAGAGTGGTGAGGGAGTATCTCAGGGAAGTG AGAGATGCTCAAGCTAGAGCTAGAGGTTATGAGAAGAAATAATTAGGTTTAGATAACAGCAAAATGGGTAGATGATGATC ATGATCATGATCTGGGGATAATGATGGAGGGGCAATTGTTTCTACAAATTTTCTAGCATTCTTTGGATTAGTTTTCTTTT CTTTTCTTGCTATTTTTCAGAATCAATTTTATATGAAACTGAAAAACTAATGTGAGTTTCTGATCAAAATTGATTTTGCG AATTGTTGAAGGATTTTTAAACCTACATTTCGTATCTCATGTTTTGATTGTGATGCATATCCTTTGTTGGCTGGAATTGT AAAATGGTATTAGGTTGGCAGCTTTTAAAAGTTTAGTGTCTAATATTAGGGCAATTCTAAGGTGGACTACTATTGATATG CTTATGAACCTTGATTTTACTATTACTATTTAGTAAGTGTTATTTACAAACTCTTTATCTGTTATAAATAAGGTGTTGAT CTAATGGTAAATAAGCTAGACTTCCGCAAAAATGAGAGCATCGGGAAAGAAATTTGTTGTGAGG
CDS sequence (LotjaGi4g1v0028500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGCCGCCGCAGCAGCCGCGGCCGCAGCCGGCGCCGCCGTATCCTACCGGAGCAACTCCCCTGAAAACTACAACCA AACTGAAGAGTTTTCACCATACACACCACCACAAACGACGCAATTCTACCCTGTTGCTCGTCCTCGTTTTAGCAGGTACG AGTCCCAAAAGAGACGTGACTGGAACACGTTCTGCGTGTACGTGAAGAACCACCATTCGCCATCATGTCACTGCGATGGC GGCGAAATCGTTCTGGGTTTCCTCCGGTACATGGATCAGTTCGGCGAAACCCAGATTCACTCTGAGAATTGTGAGTATTA TGGGGATTCGTACCCACCTGGTCCGTGTCCTTGTCCTCCGAAGCAATCGTGGGATGCTCTTGATGGAATCGTGGGTCGGT TGCTTGTGGCGTTTGAAGAGAACGGTGGGTCGCCGGAGATGAACCCGTTCGGGGAAAGAGTGGTGAGGGAGTATCTCAGG GAAGTGAGAGATGCTCAAGCTAGAGCTAGAGGTTATGAGAAGAAATAA
Protein sequence (LotjaGi4g1v0028500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAAAAAAAAAGAAVSYRSNSPENYNQTEEFSPYTPPQTTQFYPVARPRFSRYESQKRRDWNTFCVYVKNHHSPSCHCDG GEIVLGFLRYMDQFGETQIHSENCEYYGDSYPPGPCPCPPKQSWDALDGIVGRLLVAFEENGGSPEMNPFGERVVREYLR EVRDAQARARGYEKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 175 | 175 | 5.1E-68 | ||
Phobius | 1 | 2 | 2 | - | – | |
Phobius | 1 | 18 | 18 | - | – | |
PANTHER | 1 | 175 | 175 | 5.1E-68 | – | |
Phobius | 3 | 13 | 11 | - | – | |
Phobius | 14 | 18 | 5 | - | – | |
Phobius | 19 | 175 | 157 | - | – | |
MobiDBLite | 19 | 38 | 20 | - | – | |
Pfam | 47 | 164 | 118 | 7.4E-45 | ||
ProSiteProfiles | 52 | 175 | 124 | 43.778 | ||
Coils | 155 | 175 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0028500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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