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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0028600 |
| Transcript ID | LotjaGi4g1v0028600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A1J7GJY3|A0A1J7GJY3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0028600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3560142..3561264) extracted from Lotus japonicus Gifu genome v1.2.
GTTGCTGTTATTTAGGAAAGCCAAGCAATTTAGGGGATTAGTTTATCTTAATTTCCAATTCTTGCGTGTAAACCAGTATT TCCCCATCATCTACTCCATGCAACCCTCTAATCCCAAGATCCACCAAATTCAAACCACATCTTGAATACCTTAAACACTC ACATACACACAAATTCAATCTCCAATTCCAACCCAAAACTTCCAAGATAGGGAAGCACAATTATCTTCACAACTTCATAA CTCATGTCAGCGGCCGCAGCGGCTGCCGCAACCGGCGCCATCTTGGGCTATAGGAACTCTTCTAGAAGCAAGCAAAGAGA AGAGTTTTTACCATTCACACCACCAAAAATGATGCATGCAGTTTCTCCTGTTGCTCTTCCTCGTATTAGCAGGTACGAGT CCCGTAAGAGACGTGACTGGAACACCTTCTGCGTGTATCTGAGAAACCAGTACCACCCGTCCTTAACTCCCTATAGCTGC AGCGACGAACACGTTCTGGAGTTCTTCCGTTACATGGACCAGTTCGGCGAAACCAAGGTTCACTTTGAAACATGTGCATA CTTTGGTGACTCTTATGATCCACCAGGTCAGTGCCACCACTGTCCTCTGAAGCAAGCATGGGATAGCCTCGAAGGTATCG TAGGTCGCTTGCATGCAGCTTTTGAAGAGAGCGGTGGCTCGCCGGAGATGAACCCTTTTGGAACACGTATGGTGAGGGTG CACCTCATGGAAGTGAGAGATGTTCAAGACAGATCTAAAGGGATAGGTTATGAGAAGAAGAAAAGGAGTATGAGTTTATG ACTAAATTTCTTGTCTTCAAAATTTGTCTCATTTTGATGTACCACCAATGTATTGTCTTGAATGGGTAACATTTTGCTAT AGATCGATGAGTTCTTTATGTTGGTGGATAACTCTCAGTATTATAAGTGAAATGAACATTTATTTTTGGTACATCGAAAA GATAAATTGTACCCACTAGGAATCGATCCCTGGACATCCCACAACCGAACTCATATGTACCTCAGCTCCTACCACTTGAG CTATCCTACGAGGATAGTGAAATGAACATATATAGAAGTGTTTGAGTTGAAAAGAATAAGAGAATTAGGTGAATGCATCT CTG
CDS sequence (LotjaGi4g1v0028600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGCGGCCGCAGCGGCTGCCGCAACCGGCGCCATCTTGGGCTATAGGAACTCTTCTAGAAGCAAGCAAAGAGAAGA GTTTTTACCATTCACACCACCAAAAATGATGCATGCAGTTTCTCCTGTTGCTCTTCCTCGTATTAGCAGGTACGAGTCCC GTAAGAGACGTGACTGGAACACCTTCTGCGTGTATCTGAGAAACCAGTACCACCCGTCCTTAACTCCCTATAGCTGCAGC GACGAACACGTTCTGGAGTTCTTCCGTTACATGGACCAGTTCGGCGAAACCAAGGTTCACTTTGAAACATGTGCATACTT TGGTGACTCTTATGATCCACCAGGTCAGTGCCACCACTGTCCTCTGAAGCAAGCATGGGATAGCCTCGAAGGTATCGTAG GTCGCTTGCATGCAGCTTTTGAAGAGAGCGGTGGCTCGCCGGAGATGAACCCTTTTGGAACACGTATGGTGAGGGTGCAC CTCATGGAAGTGAGAGATGTTCAAGACAGATCTAAAGGGATAGGTTATGAGAAGAAGAAAAGGAGTATGAGTTTATGA
Protein sequence (LotjaGi4g1v0028600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAAAAAAATGAILGYRNSSRSKQREEFLPFTPPKMMHAVSPVALPRISRYESRKRRDWNTFCVYLRNQYHPSLTPYSCS DEHVLEFFRYMDQFGETKVHFETCAYFGDSYDPPGQCHHCPLKQAWDSLEGIVGRLHAAFEESGGSPEMNPFGTRMVRVH LMEVRDVQDRSKGIGYEKKKRSMSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| PANTHER | 1 | 182 | 182 | 1.8E-69 | – | |
| PANTHER | 1 | 182 | 182 | 1.8E-69 | ||
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 185 | 166 | - | – | |
| Pfam | 46 | 166 | 121 | 3.7E-46 | ||
| ProSiteProfiles | 50 | 180 | 131 | 45.253 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0028600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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