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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0028700 |
Transcript ID | LotjaGi4g1v0028700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A1J7GJY3|A0A1J7GJY3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0028700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3564942..3567381) extracted from Lotus japonicus Gifu genome v1.2.
CACCCCTCCTCCTTAATTTGTTCTCCACATGCAGAATTGTGTAAGGCCCTTGCTAGCTAACAAGAGCAAGAAATTCAACC CACATAACTGGATCCATCCATATGTTATCAAAATCACACCAAACTCCCATCTTTTTCCATTTGACCATAGCTAACTCTAA AAAACTCATAAATTTTCAAGGGGTAATGATATATACACACCTCATTTTTTAAACACTTCATTTCCACATTTTTTTTATTT CTATCTCTCTCATCTTATCATCTATCACATCTCATATTTTCTCTCTCTTACTTTTTCTTTTCTTCCTATCTCTCTCACCA TTCCACCTCTCCACCTCAAAAGAGAGGTGTAGATGAAACATTATCCATTTTCAAGGTCACCGACTTTCCCTCCTCCAATC CAGCCAGTTTGCTTTTGACAATTCCCAACCAAACCCACCTGAAGAATAGTTCCTCAAGAACAAAGGTCTTATACATTCCC ATATATCTAATTTTCATCCACTTTTACTTTATATATCTTTAAGTATTTTTTTATCATATCCAACATTATATTTCTATTTC TTTCTCATCTCTTCCTTTTTTTTTTTTCTGAGTGTGAGTGAATTTAGAGTGGGTAAGTATCTTTATCTAAGAACAAATAT CTCATACCACAATACAACATTACAACCCTCTATAAATATCACCTCCCAAAATCAAGCAAATACAAAAACACACACACCTA TACTTCCAAGAAAAAGGGAATTGCCCAATTATCCTCAAAAGTTCATTATAACTTTATTATGTCCGCCGCCGTGGCCGCTG CTGCCGCTTCAGCCGCCATCTCAGGCTACCGGAACTCCTCTGAAAACCAGCAAAGAGACGTGTTTTCACCATACACAAAC ACCCCACCACCACAAATGATGCAAGTTTCTGCTCCTCCTCCTCCACTTAGCCGTTACGAGTCCCAGAAGAGACGTGACTG GAACACGTTCGGCCAGTACCTGAAAAACCACCGTCCACCCTTAACCCTCTCACGCTGCAGCGGCGCGCACGTGCTGGAGT TCCTCCGCTACCTGGACCAGTTTGGCAAAACCAAGGTTCACTCTGAAATATGTCCCTACTTTGGAAACTCTCATCCGCCT GGTCCGTGCCCTTGTCCTCTGAAGCAAGCATGGGGGAGCCTCGATGCTCTCATCGGTCGGTTGCGTGCGGCGTTCGAAGA GAACGGCGGGTTGCCGGAGATGAACCCGTTTGGGGCGCGTGCGGTGAGGTTGTACCTCAGGGAAGTGAGGGATGCTCAGG CTAGAGCAAGAGGGATTGGTTATGAGAAGAAGAAACGGAGGAATAATGGTAATAAGACTCAGAAACAGCAAAATGAGTCT ATGGTGATGATGATGGAGGAGCAAGTGGGTGATGTGAGTTCAAGTGCAGTGTTTTCAGGGTATGGGGTTGGTGGTGGATT TGTTCATTTGTCTGATTCAAATGGGACTCATCCTGGAACTGCTGCTGCAGTTTCATACTTCTCATCATAGTGTTTTTTTA GTTGCATTTTTTTGTACCACCAATAAAATCCTGTCAAATGATTAGTACTTTTTATTTAATATGGTATCAATTTCATTAGT GTGGTGTGACTGAAAATGAGGGAAATAGAAGATTGTCAATCCTTAATTTGGATGCATATCCTTTAGGGGGAAGTTGTAAC ATGATACAGTACTAGTGTGGTTCTAAATTAAATGATTACTGTGGTAGGGCTCACTAGTGATGCACTGAGAGTGGTCATTA CTTTGAGCAGCTTATCAAGTGTAGTGTCTAGCTAATATTAACCATATGGAAATTTCGTTCTTTATATCAATTAATATATG ATTTGATGTACCAAAAAATTAATATATGATTTGGTCTTTATAGTATATGGTAAAAATTGAAGGAATCTGTTTATTTATTC TTGTGTTGTATAGTATAAAGTCTTGTATTATAAGATATGATAGTATTTAGTCAAATAAAATAAGATATAATAAAAATTTA ATATTATTCAGCGTTTGGTCATACGATAACTTATTATATATACAATCATATGTTCGGTGGTGATGGTGGTTGTATTGATA GTGATGATGAGTGGTGGTGGCGGCTGTAGAGGTGATAACGTTAGCGATAGAGTGACGACGAAGGTGGAGGTGGTGGTAGC GATAGTGATGGCGACGATGGAAAGTGTGGTTGTAGCGGTAGGTTGGTGGTGACGGTAGGGGTGGAGGGCATGGAGGCGGT GGTCAAGGTGGTTGTGGTGGCGCTAGTGGTGGTGTAGGGTGGTGGTAGAGTGTGGTGGCAGTAGCGATCTTTAGGGCGGT GATGACGACAATGGCGGTGGTGGTTTTGGTTGTGTGGCAGTGACAAAGAGTGATGGTTTCAAATAACTTATGTGTCACAA TCTTATGAGACCTTATTTCACTTCTATAGATTGGATTAAG
CDS sequence (LotjaGi4g1v0028700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCGCCGCCGTGGCCGCTGCTGCCGCTTCAGCCGCCATCTCAGGCTACCGGAACTCCTCTGAAAACCAGCAAAGAGA CGTGTTTTCACCATACACAAACACCCCACCACCACAAATGATGCAAGTTTCTGCTCCTCCTCCTCCACTTAGCCGTTACG AGTCCCAGAAGAGACGTGACTGGAACACGTTCGGCCAGTACCTGAAAAACCACCGTCCACCCTTAACCCTCTCACGCTGC AGCGGCGCGCACGTGCTGGAGTTCCTCCGCTACCTGGACCAGTTTGGCAAAACCAAGGTTCACTCTGAAATATGTCCCTA CTTTGGAAACTCTCATCCGCCTGGTCCGTGCCCTTGTCCTCTGAAGCAAGCATGGGGGAGCCTCGATGCTCTCATCGGTC GGTTGCGTGCGGCGTTCGAAGAGAACGGCGGGTTGCCGGAGATGAACCCGTTTGGGGCGCGTGCGGTGAGGTTGTACCTC AGGGAAGTGAGGGATGCTCAGGCTAGAGCAAGAGGGATTGGTTATGAGAAGAAGAAACGGAGGAATAATGGTAATAAGAC TCAGAAACAGCAAAATGAGTCTATGGTGATGATGATGGAGGAGCAAGTGGGTGATGTGAGTTCAAGTGCAGTGTTTTCAG GGTATGGGGTTGGTGGTGGATTTGTTCATTTGTCTGATTCAAATGGGACTCATCCTGGAACTGCTGCTGCAGTTTCATAC TTCTCATCATAG
Protein sequence (LotjaGi4g1v0028700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAAVAAAAASAAISGYRNSSENQQRDVFSPYTNTPPPQMMQVSAPPPPLSRYESQKRRDWNTFGQYLKNHRPPLTLSRC SGAHVLEFLRYLDQFGKTKVHSEICPYFGNSHPPGPCPCPLKQAWGSLDALIGRLRAAFEENGGLPEMNPFGARAVRLYL REVRDAQARARGIGYEKKKRRNNGNKTQKQQNESMVMMMEEQVGDVSSSAVFSGYGVGGGFVHLSDSNGTHPGTAAAVSY FSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 242 | 242 | 9.3E-111 | ||
Phobius | 1 | 20 | 20 | - | – | |
Phobius | 1 | 2 | 2 | - | – | |
PANTHER | 1 | 242 | 242 | 9.3E-111 | – | |
Phobius | 3 | 14 | 12 | - | – | |
MobiDBLite | 15 | 54 | 40 | - | – | |
MobiDBLite | 15 | 39 | 25 | - | – | |
Phobius | 15 | 20 | 6 | - | – | |
Phobius | 21 | 243 | 223 | - | – | |
Pfam | 44 | 165 | 122 | 1.8E-64 | ||
ProSiteProfiles | 52 | 179 | 128 | 80.439 | ||
MobiDBLite | 171 | 191 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0028700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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