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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0031000 |
| Transcript ID | LotjaGi4g1v0031000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar iron transporter-like protein; TAIR: AT3G43660.1 Vacuolar iron transporter (VIT) family protein; Swiss-Prot: sp|P16313|NO21_SOYBN Nodulin-21; TrEMBL-Plants: tr|H3JSR8|H3JSR8_LOTJA Putative uncharacterized protein SEN1; Found in the gene: LotjaGi4g1v0031000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3854764..3857717) extracted from Lotus japonicus Gifu genome v1.2.
GCCGAACGCACAAGCAAACCTTTCAATAATCAGATGGATCAATATACATGATATATCCCTCGGATTCTCCACTCTTTTCT TGTTAAGAAGCCTTGAACTTCCACCCTCTTCATCTCTCAAGTCTTGACTCTTTGTTCTCTACCTCTACTTTTTTGCTTGT TCGCACCAAATGGCTGCTGGTGCACCCAACCATGTAGGTACAATTCCAAACCCTGCAAATGGAACCACTGATCAGAACAA GCAAACACAAGTGACTGATGTTCCCCGCGTTGTTGACTACTGGCAGAGGGCTCAATGGCTTCGTGCTGCGGTGTTAGGCG CCAATGACGGTTTGGTTTCTGTTGCTTCACTGATGATGGGCGTAGGAGCTGTCAATAAAGATGCCAAAGCAATGCTGCTC GCGGGTTTCGCCGGATTAGTTGCAGGAGCTTGTGGAATGGCAATAGGTGAGTTTGTTTCTGTGTTTACACAGTATGAAGT CGAGGTTGGGCAAATGAAAAGAGACATGATCAAGAGTGAGCAAGGAGAGAGGGACTTGGAGATGGCGATGGAGAAAAGGA AATCCATACCTAATCCAATGCAGGCTGCTTTGGCATCTGCATTCTCATTCTCTATAGGTGGATTGGTTCCTTTACTTTCA GGTTCGTTCGTCTCAGTTTACAAGATAAGGCTTCTTGTGATTGTGGTGGTTGTTAGCTTGGCTTTGGTGGCTTTTGGTAG CGTGGGTTCTCTGCTGGGAAAGACTCCCATGACGAGATCTTGTGTGAGGTTCATGATTGGGGGATGGATGGCCATGGCTA TCACTTTTGGGTTAACAAAATTGCTAAGTGCTGGTGGGTTGGAAATATAAATCCTCTTGGCCCTGGTTTTTAGTCACTTG TCTAATGAGAGCAATTAACCTCTCCTTTTATCTTCATTAATTGAATAAGTGTGAGATCTTTAATTGGACATGTTTTTTTT TTTTTTTTTTTTTTGAAATAAAGGATAGATATATTAATTAGAGTGGGGCATAGAAGCCATAACATCAGCATCCACAAGAG GAATCACTTCAGGCGGAGCTTCTTCAATCCAGACAGCCCCCGGATAAGAAGAAGCATGCCGTGCTAAATAGTCTGCAACT GCGTTGCCATTCCGGCGTACAAAAGAAATAGAAACAGAAGTAAATTGAGAAACTAATCTATGACAATCCGCTAAAATAGA AAATAAATAAGAGTTGCCTGGAGAAGAGCTTCTCCAACCATTAAAGACCTGCAAATTATCAGTCTCAAGGCACAGTTTCA TGAACCCAAGATCTCGTGCCATCACCATTGCCCAACGAATTCCTTGTGCCTCAGCGAGCGTCGCGGACAAAGCCGGAGTT GTATGGGAGGTCGCCACCGCAAGTACCTCCCCTAGATAATTCCGAGCCACCAAACCATAACTGGCTCCTCCATCCGCACG AAAAGACGCATCAACATTAACCTTTGTCGTTCCTCGTTGAGGCCGCGACCAAGAAGAAGCCATGTCCCGTTGCGCTCGCC CCACAGGTGCATGAACTGGTGTGGGCATCTCCATAAGCGTCGACAACCTCTGCAACAGGGACTCCATGGAAACAGGTTTG TTGTTGAAAATCAAAGCATTCCTAGCCTCCCACAATGTATACAACCAAGCCTGGAAAACCGGTATGAAGTCCTCCTCCGC CGTAGACAAGAACGCCACCGCCAACTCATGCAAGGACGAAAAAGAAGCCACCCGAATTGCCAGCGGCGAAGCAAACCACA ACGGTTGCACCGCCGGACAGCACACAAACACATGATCATTCGTTTCCTCTTCACAACCACACAAGGGGCACCGATCATCA ACATCCATTCCACGAATCCTGAGGCTCACTCGAACCGGAAGAATCCCTTTGATTGCTCGCCAGGCAAGCTCCTTGCACCG AGGCAAGGCCTCAGACCTCCAGAACTTTTTCCATAACGAAGGATGAAGATTACCTCCACTGGAAGATGAGGATACACCCT CTTGGGTCAGAGATTGCAACAGCTGATACCCTGACTTACTGGAGTACATGCCATTAACAGTCCAGGGCCAAAATAAGCAA TCATCACCACGAAACAGAGGGACTGGAACAGCAAGGATTCGCTGAACTGTTGCTGGCGCAAAAACCATCTCCAAGAGAGG TACATTCCAACCACCATGGGGCTGAACAATCAAATCAGAAACCAAATGAATACCCCATTCAGCCACCAAATCCTCTCGGA ATAAAAGAGGAGCTCCCCCAGGAAGCCAATTATCCCTCCAGACCTGAACCTTCTTTCCATCACCAATCCTCCATCTTGCT CCTTTGTCAAAAATCAACTTTGATCGTAAAATACTAGTCCATGCATAACTTGGCCGGTATCCTTTCTTTGCATCCCAAAG ATCAGATCTTGGGAAGTAAGCAGCTTTAAAAATCTGAGCAAGCAAAGTGTCCGACTGCGAATAAATCCGCCACCAATTTT TCCCCACCAAAGACAAGTTAAATGCCTTGAAATCTCGAAAGCCCAAACCACCATCATGCTTGTGGCGGCACAAAGTGCTC CACTTAACCCAATGTATTCCTCTACGGGAAGCATCACCAGCCCAAAAGAACTTGGCAATCATACCAACAAGCTCTGCACA CAAACTGTCAGGCAGAACAAAACAAGACATAACATAAGATGGGATAGCTTGAGCTACCGACTTGATAAGAACCTCTCTGC CAGCACGGGAGAGGAACTTCTCTTTCCAGCCCTTAAGCTTCTTCCAAACTCGATCTTTAACAAAATTAAAAATCTGGGAT TTAGACTTACCAATTATGGTTGGAAGTCCTAAATATTTATCAAAACTCTCCACTGCCTTAACACCCAAAAGCTGTTTAAG CTCATTAAAACTAGTATCAAGCACGTTTCGGCTAACTGAGAGCATTGATTTGTCAAGATTTATGACTTGTCCTG
CDS sequence (LotjaGi4g1v0031000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTGGTGCACCCAACCATGTAGGTACAATTCCAAACCCTGCAAATGGAACCACTGATCAGAACAAGCAAACACA AGTGACTGATGTTCCCCGCGTTGTTGACTACTGGCAGAGGGCTCAATGGCTTCGTGCTGCGGTGTTAGGCGCCAATGACG GTTTGGTTTCTGTTGCTTCACTGATGATGGGCGTAGGAGCTGTCAATAAAGATGCCAAAGCAATGCTGCTCGCGGGTTTC GCCGGATTAGTTGCAGGAGCTTGTGGAATGGCAATAGGTGAGTTTGTTTCTGTGTTTACACAGTATGAAGTCGAGGTTGG GCAAATGAAAAGAGACATGATCAAGAGTGAGCAAGGAGAGAGGGACTTGGAGATGGCGATGGAGAAAAGGAAATCCATAC CTAATCCAATGCAGGCTGCTTTGGCATCTGCATTCTCATTCTCTATAGGTGGATTGGTTCCTTTACTTTCAGGTTCGTTC GTCTCAGTTTACAAGATAAGGCTTCTTGTGATTGTGGTGGTTGTTAGCTTGGCTTTGGTGGCTTTTGGTAGCGTGGGTTC TCTGCTGGGAAAGACTCCCATGACGAGATCTTGTGTGAGGTTCATGATTGGGGGATGGATGGCCATGGCTATCACTTTTG GGTTAACAAAATTGCTAAGTGCTGGTGGGTTGGAAATATAA
Protein sequence (LotjaGi4g1v0031000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAGAPNHVGTIPNPANGTTDQNKQTQVTDVPRVVDYWQRAQWLRAAVLGANDGLVSVASLMMGVGAVNKDAKAMLLAGF AGLVAGACGMAIGEFVSVFTQYEVEVGQMKRDMIKSEQGERDLEMAMEKRKSIPNPMQAALASAFSFSIGGLVPLLSGSF VSVYKIRLLVIVVVVSLALVAFGSVGSLLGKTPMTRSCVRFMIGGWMAMAITFGLTKLLSAGGLEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 42 | 42 | - | – | |
| MobiDBLite | 12 | 26 | 15 | - | – | |
| PANTHER | 24 | 221 | 198 | 9.3E-88 | ||
| PANTHER | 24 | 221 | 198 | 9.3E-88 | – | |
| CDD | 42 | 193 | 152 | 5.36723E-57 | – | |
| Phobius | 43 | 68 | 26 | - | – | |
| Pfam | 44 | 115 | 72 | 2.6E-21 | ||
| TMHMM | 46 | 68 | 23 | - | – | |
| Phobius | 69 | 73 | 5 | - | – | |
| Phobius | 74 | 100 | 27 | - | – | |
| TMHMM | 78 | 100 | 23 | - | – | |
| Phobius | 101 | 138 | 38 | - | – | |
| Pfam | 112 | 216 | 105 | 6.6E-20 | ||
| TMHMM | 139 | 161 | 23 | - | – | |
| Phobius | 139 | 160 | 22 | - | – | |
| Phobius | 161 | 165 | 5 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 166 | 189 | 24 | - | – | |
| Phobius | 190 | 200 | 11 | - | – | |
| Phobius | 201 | 220 | 20 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 221 | 226 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion transmembrane transporter activity | Enables the transfer of manganese (Mn) ions from one side of a membrane to the other. | ||
| Biological process | Cellular manganese ion homeostasis | Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. |
Expression pattern of LotjaGi4g1v0031000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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