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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0031200 |
| Transcript ID | LotjaGi4g1v0031200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar iron transporter-like protein; TAIR: AT3G43660.1 Vacuolar iron transporter (VIT) family protein; Swiss-Prot: sp|Q9M2C0|VITH4_ARATH Vacuolar iron transporter homolog 4; TrEMBL-Plants: tr|V7CLG5|V7CLG5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0031200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3863886..3865036) extracted from Lotus japonicus Gifu genome v1.2.
TGATCCCTCTGTATAAATACCCTCATCAGGAGAGTGTGATTGCCACAAGCTCTCAATATCATATTCCCATATTTCCTACT TTTCTATCTAACAACTTTTTATCACTTTTGATATTCATCATGGCATCAAACCATGTTGAGATCCCTATCCATGCCAATGT TTTGGAGCCAAAAGAAAGCGAAGGGGTAGAAGAGAGCAACAATAATTATATTGACTACTCTCAGAGGGCTCAGTGGCTCC GAGCGGCGGTTTTGGGAGCAAATGATGGGTTGGTCTCAGTTGCCTCACTGATGATGGGTGTTGGAGCTGTTAAGGAAGAT GTGAGTGCCATGCTTCTTGCTGGTTTTGCTGGGTTGGTAGCTGGAGCTTGTAGCATGGCAATTGGAGAGTTTGTCTCTGT CTATACTCAGTATGACATAGAGATAGCTCAAATTAAAAGAGAAAGAGAAACTAATAATAATAATAATAATGAAGAAGCTG AAAGGGAGAAGCTTCCAAACCCATTTCAAGCTGCCCTAGCATCAGCACTGGCTTTTACAGTGGGTGCTCTAGTGCCACTT CTCGCTGCTGTGTTTATAAGGAATCACAAGATCAGGCTTGGTGTTGTTGCTGTTGTGGCTAGCTTGGCCTTGTTGGTATT TGGAGTGGTAGGAGCAGTGCTTGGAAAAACCCCAGTGAAGAGGTCTTGTTTTAGGGTGCTGATTGGAGGTTGGATGGCTA TGGCCATAACATTTGGCCTCACAAAATTGATTGGCTCTGCTGGTCTTTGAAAATTGTCTGTTACTCTAGTACTGTTGTTA TAGTAATGTTTTTTCTTGTTTTTCTTCATTACTATGATTTGTGCTAGGAAGGGTACTCCAACTTCTAGTATTACTATTAA TAGGTTTGTGTCTGCTTTGTTAACACAATAAGCTAGAATGCCCTCATGCACACAACTACATTTAATAGCTATGTTATCCC CAAGAACTTCAGGGGTCCTTATGTTTTAATTTGTTTTATCTGGATCTTTTTATTTTATTTGGTGTGTTACCCTGTGTTTA TCCGTACGTGTTCCAAGCAAAATTGTATAAGAAAAAAACATACATCAATTTCCTTTCCTTATGTCTATTTTGTTAAATTC TTCATTTATGTAATGATAAATGAACTTCAAT
CDS sequence (LotjaGi4g1v0031200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCAAACCATGTTGAGATCCCTATCCATGCCAATGTTTTGGAGCCAAAAGAAAGCGAAGGGGTAGAAGAGAGCAA CAATAATTATATTGACTACTCTCAGAGGGCTCAGTGGCTCCGAGCGGCGGTTTTGGGAGCAAATGATGGGTTGGTCTCAG TTGCCTCACTGATGATGGGTGTTGGAGCTGTTAAGGAAGATGTGAGTGCCATGCTTCTTGCTGGTTTTGCTGGGTTGGTA GCTGGAGCTTGTAGCATGGCAATTGGAGAGTTTGTCTCTGTCTATACTCAGTATGACATAGAGATAGCTCAAATTAAAAG AGAAAGAGAAACTAATAATAATAATAATAATGAAGAAGCTGAAAGGGAGAAGCTTCCAAACCCATTTCAAGCTGCCCTAG CATCAGCACTGGCTTTTACAGTGGGTGCTCTAGTGCCACTTCTCGCTGCTGTGTTTATAAGGAATCACAAGATCAGGCTT GGTGTTGTTGCTGTTGTGGCTAGCTTGGCCTTGTTGGTATTTGGAGTGGTAGGAGCAGTGCTTGGAAAAACCCCAGTGAA GAGGTCTTGTTTTAGGGTGCTGATTGGAGGTTGGATGGCTATGGCCATAACATTTGGCCTCACAAAATTGATTGGCTCTG CTGGTCTTTGA
Protein sequence (LotjaGi4g1v0031200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASNHVEIPIHANVLEPKESEGVEESNNNYIDYSQRAQWLRAAVLGANDGLVSVASLMMGVGAVKEDVSAMLLAGFAGLV AGACSMAIGEFVSVYTQYDIEIAQIKRERETNNNNNNEEAEREKLPNPFQAALASALAFTVGALVPLLAAVFIRNHKIRL GVVAVVASLALLVFGVVGAVLGKTPVKRSCFRVLIGGWMAMAITFGLTKLIGSAGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 67 | 67 | - | – | |
| PANTHER | 22 | 214 | 193 | 1.3E-102 | – | |
| PANTHER | 22 | 214 | 193 | 1.3E-102 | ||
| CDD | 38 | 185 | 148 | 4.86951E-53 | – | |
| Pfam | 40 | 123 | 84 | 4.4E-27 | ||
| TMHMM | 42 | 64 | 23 | - | – | |
| Phobius | 68 | 88 | 21 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 89 | 130 | 42 | - | – | |
| Coils | 100 | 123 | 24 | - | – | |
| Pfam | 122 | 208 | 87 | 9.1E-19 | ||
| Phobius | 131 | 153 | 23 | - | – | |
| TMHMM | 131 | 153 | 23 | - | – | |
| Phobius | 154 | 159 | 6 | - | – | |
| TMHMM | 158 | 180 | 23 | - | – | |
| Phobius | 160 | 181 | 22 | - | – | |
| Phobius | 182 | 192 | 11 | - | – | |
| Phobius | 193 | 212 | 20 | - | – | |
| TMHMM | 193 | 215 | 23 | - | – | |
| Phobius | 213 | 216 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion transmembrane transporter activity | Enables the transfer of manganese (Mn) ions from one side of a membrane to the other. | ||
| Biological process | Cellular manganese ion homeostasis | Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. |
Expression pattern of LotjaGi4g1v0031200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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