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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0034500 |
| Transcript ID | LotjaGi4g1v0034500.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT3G56891.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|B3H6D0|HIP45_ARATH Heavy metal-associated isoprenylated plant protein 45; TrEMBL-Plants: tr|I3SCV8|I3SCV8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0034500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4187487..4187859) extracted from Lotus japonicus Gifu genome v1.2.
TTGCAGACAGTTGAGCTAAAAGTGGAGATGGTGTGTATACATGAGAAAAGACTAAGGAAATGCCTCTCAAAATTGAAAGG TTTGTTTGTTTGGTACAATATTACTCATCAATGTCACAATAATTCCCGAGTTAGAAATTGAATTAATATAGGTTCTTTTT ATGGATATACATGCAGGGATAGAGAAGGTGGAAGTGGATACTAACTGCCAGAAGGTAGTGGTCACTGGATATGCAAACAA GAACAAGATCCTTAAAGCAGTTAGGAGAGGGGGTCTCAAGGCTGATTTCTGGTCTGCTCAGAATGAGTTGCTTAATGCTT ATGTCAGTGCCAAATATGCCAGCTTCAGATTCAACCCCTTCAGCTTCTTCTAG
CDS sequence (LotjaGi4g1v0034500.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTGTATACATGAGAAAAGACTAAGGAAATGCCTCTCAAAATTGAAAGGGATAGAGAAGGTGGAAGTGGATACTAA CTGCCAGAAGGTAGTGGTCACTGGATATGCAAACAAGAACAAGATCCTTAAAGCAGTTAGGAGAGGGGGTCTCAAGGCTG ATTTCTGGTCTGCTCAGAATGAGTTGCTTAATGCTTATGTCAGTGCCAAATATGCCAGCTTCAGATTCAACCCCTTCAGC TTCTTCTAG
Protein sequence (LotjaGi4g1v0034500.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVCIHEKRLRKCLSKLKGIEKVEVDTNCQKVVVTGYANKNKILKAVRRGGLKADFWSAQNELLNAYVSAKYASFRFNPFS FF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 82 | 82 | 6.6E-47 | – | |
| CDD | 1 | 53 | 53 | 3.8259E-7 | ||
| Gene3D | 5 | 53 | 49 | 8.0E-8 | – | |
| Pfam | 6 | 48 | 43 | 2.2E-7 | ||
| SUPERFAMILY | 7 | 61 | 55 | 4.06E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi4g1v0034500.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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