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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0035200 |
| Transcript ID | LotjaGi4g1v0035200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tobamovirus multiplication protein 1; TAIR: AT4G21790.1 tobamovirus multiplication 1; Swiss-Prot: sp|Q9FEG2|TOM1_ARATH Tobamovirus multiplication protein 1; TrEMBL-Plants: tr|I1KR24|I1KR24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0035200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4268594..4273457) extracted from Lotus japonicus Gifu genome v1.2.
CATTGAACCAGAATCATCCATCAACCGATATCATCATCATCATCATCGTATTCGTAGTGATCCCATTCCAACGAAGCAAA CTACAACATGTCCACTACATCAAAATGCCACCATGTCACACGTGTATAACAACACACCTACGTGTACGAACTGGGGTCTC GCCACGTGTCCATCCATGAACTTCCCCTGTTCCTCTTCTCTCTGTTAGTCTGTTCATTGCTCTGTTTCACAGAGAAGTTT CCCCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTGATACTCTGCATTGTGATTCTATCACCAATGGGGTTCTCA CTCAGGACCAAGAGTTTTGGGTTTATAGAAGGAGAGGCTGCTGCAGTTGCAGTTAACTCTAACTGGTGGAACGAGATTGA TGAATCAGATCAATGGCAGAGAAGCATTTACTATACCCTTTGTGCCGCTTATGCATGTGTTTCCTTTGTTGCCCTGGTAC GTCATTTCCTTTGGCTTTCCTGTTAAATTGGGTATATCATTACATCAAATCACAAAAGGGTTTAAACTTGTGAGTTGTGA CTGATGACTAGATTTTTGTTATCAAACGCTAGTGTTTCTCCATGAGGAGGATCATTGTTTTTATATCCATGCAATGTGAT GGCTGAGACCCCTGAAATCATCATATTTTCTCAAAGGAATAAATAATCATAATTTGTTTATTTTTCTCCTAGGTGCAATT GGTGCGCATTCAAATGAGAGTACCTGAATATGGGTGGACAACGCAGAAGGTTTTTCACTTGATGAATTTTGTTGTCAATG GATGTAAGAGCTGTGAATCAGCTACGTTAGCTTCTTTAATTATTAATATTATATTTAGTTCTTGCTGAAACTGGTTTACA TTTGCAGTGAGAGCTGTCCTTTTCGGCTTATACCAAAGTGTTTTTGCCATTAGACCAAAGGTATTTACTATTCTCAAATC TCAAGTACTCCAATCAGGCACTAATTCCCACTTCTTCATCTCTTGCTTTGGTTGGTTAGGGAACTATAATGAAAATAGAG CACATCATGTCATGTCTTTTAGTAAGCTTTGTTTTTGGTGCTTTGGGTAAACAGTTTAATTAAGCATAGAGAAGCTTGTT GAAATAAGTACAAAATAGCTTTTAGGTATGTAGAAGCATTCATTTTCAACCTAATCTGAACGATTTATGAAAATAAGCTA ACTGATTGGAGAAACTTATTGAAATAAGTATAAGATAGCTCGCAGGTATAAATGCTTATTTATAAGCTAATATGAGCAGC TTAGGGAAATAAGTTCAAAATAACATATGTTGGTCACAAGATTCTTATATAAGTATTGTCAAACACTTAGATAAGCACTT ATGCTATAAAATAAACTTAAATAACTTGTTCCGAAGCCTTTGGATGTGTACATTTTGGAACCAACTATGGGTTATGGAAA TAGTTTACTTTAATCCTTCCCCAAATAATCTGAATAACCTTCATTTTTCTGTGTTTTTTTCTTTTACCTTCACTTCTGGA CCTTATTTCCAATCACATAGTGAGCTTATTATCATATCATGTTATAGGCACTGGAGCAGGTGGTGATGGAGGTTCCTGGT CTTCTTTTTTTCTCTACATATACATTGCTTGTCTTGTTCTGGGCTGAGATATATCACCAGGTACATTTACTTGCTTTTAA GGGAGCTGCAATAACAGTCATTTTTTATAATTTGCTGTGAATAAAAGATATTCTGTTTTGTGCTTCAAATGTATTTCAGG CAAGAAGTGAACCAGCACATAAACTCAGACCTGCTTATTTTATTGTCAATGGATTTGTTTACTTTGTACAGGCAAGCATG CAAATTTTATTTCCTTGTTCACCATTCTTGTCCTTAAATTAAGAAGTTTTCACAAAAGTTAATTTAATGAAAATGTATTT TTTTTAATCTTCCCATCCTGATAATAATAGGTTTGCCTCTGGATTTACATGAGCGTAAGTAAAACTGCCACTGGCATTGA AGCTGCTAAGCTCTTACTTGCAGGTAATTTCTGTCGTCATTACTTTAGTTAATTACCTTTTTAGCATCAAATATTAATTT CATCTCATGTTCATATTCGTGGTGACTCCAAATCGTTTAGAAGATTAAAACATATATAATCAGGGGCAGAACCAGAAAAA TGAGTAAGAGGGGCGAAATTTAACACACTAAGCAAAATCAAGAATGATCAGTGGAAAAAAATAGTATAAATTTTTTAAGG GAGAGAATACAACATTTGAATACTACTTAATTAAGAAAAAAAATTCTCTTAGGGTGACAGGCCCATTTTGAGCACACCTT GGTCTGTCCCTATCTTCAATGATCTTAAAATTAAAGTTAGAGTGAACATTTATAATGAAATAAACATTGTACTCAGAAAT TTCTCATCTAGAGTGGTATGGTATTTTGAACTTTATTTCAATGTTACTTTTGCAGTAATATCATTCTGTGCTGCTCTTGG ATTTTTGTTGTATGGTGGAAGGTAAGCTGTCAGAATTTCATATAGAACCATACTTGTTTTTCATTGAATACTAACCTGCT CATAAGTCATAAATCATAATGATGTAGGTTGTTTTTCTTGTTGAGGCGCTTCCCCATTGAATCTCGAGGTCGCCAAAAGA AGCTTTATGAGGTTAGTATCTAAGTATGAGTTGCTTTATGATTTTCAACCATAGAAAAGAAGTGAATCCTTAAATATTAA ATTCAGACCATGTTCCAAGTGAGAGGAAAAGCTTGTGCAAGAGCCTTTATTTGATAAAAACTCTGCTAAAAGTTGTTGTT GTCGTAAATTTTATCTTGGCAGGTTGGGTCAGTCACAACTATTTGTTGCACTTGTTTCCTGATAAGATGTGTTTTGGTAA GTTCCTTGTCAGTGTAAACAGTTTAAAACTATTTTATATTATATGAGCCTATTGTTTTCTGACCAGAATTTCATTTTTAC CTTCAACGTAGCTTGCAATTTCTGCATTTGAAGAGGATGCAGATCTTGATGTCTTGGATCATCCCATTCTTAACTTAGTA TATTATTTGGTAAGTATCAACACATTATATTTACAAAAATGCTTAGTTATATCATGTGATTGCATATTAAAATGCTCTCC TAAGACAAGGACCACTTATTTGGTGTATGAACAAAAATATGATGTTATCTACTAAACAGAACGTACTTTCAACAGCTTTA TAATTAGGGTAGAATTAGCATTTTCATGAGCTATTTACATGCCTTTCTGAGGTTTGACCAAAATTATAGGAAATTGCACT AAAAATATTTTTTAGTTGAAGGTTTGTCAAATTTCAGAGTATAGGAGGTCATGTCATCTTGAAATTTAGATGAGAATCAA GGGTTTAGCTGCCTCTAAAGTTGGGAGCACTTTAGAGGGTAAAGTAAGCTCTTATAATCGTAGATTGAAAAATCAATGAT TGAGATTTAAATAACATAGTAGGTTATTATACATGTGCAAATATGATCACAATCTCAATAGTTGATTTCGCAATCAATGG TTGTAATTGCTTACTATGCTCTATAAAATGACTCATTACTTTAGAGTCGTCAAACCCGGAACGAAATATGGTTTAAATAT AGCACCAGAAACCTATCGATCCCCTCTATTATTTGCCAAGTAAAAAGTAAAAGTCTTCGTAGGATCATGGTCATGAAACA GTCCACAAGTCTTTGAATCATGAGGATTTTCAAATTTTAACATCTCATATTAAAATATTAAAAATGTATATCTAAATTTC ACATTGGGGCAATGGCATCATTGTATTTGTTTGGCCCAGGAAAATGGCTGTAGTGCAATGAAATAACTCCTAATATTTAT ACCAACCCTTAGTTCTTTAGGGGTTCTGAGGCTTTAAGATCGTGTAATTTAGATAATCCAACACAATACCCCATCAGACG AGGAAACTCTTGATTACTTGGTTATAAATAATCAGGTGTCAGGTGAAGCTTAAGGAAGCTAGATTGTTGTGATAAAATAT GCTTTAATAGAAAGATAAATATTTCACACATTGCTGTTTCCTGAATATCATTTGCATTGAGCTTTTTTCCTAACAATACT CTCTTCATTGATTTATCTGTCCTGCAGTTGGTAGAAATTGTTCCATCCGCGTTGGTGCTCTTCATCCTACGAAAGCTGCC CCCAAGACGAGTTTCTGATCAGTATCACCCCATTAGATGAGTTGTGTATTCTAAATTCTCTCGGCAGCCAACAATTTTCT TTGTTCCTTTTTCAATAGATCTTTTTCACTGTCTGAGCTGGTCCATAATCCTTCAAATACTGTTTGTACATTCATAATTT TATTTTATTAAATTAACTTCAATCATTCTCTAGAACACAAACCTGCCAATTTTCTCTCTTGGATTTGTAGACAAATTATT CTGTTCTTCTAAAGGAGAAACGTAACAAGAAAACAGAATCTTGTAAACTTTGCACCTTTCAAACAACAATTATATTTTCA AATTTTAAAAATTGGGGAAGAAAGGAAGCTTTGAACAGAATGTGTTGTCTACGCTCACTATTTTGTCTTTCACCAGTTAC AGCTCCAATAATAACATGTGCACCAGGATTATATTACTTGGTTAAATTTTCACTCTTACCATTCTATACGACCTCAGTTT AAATTTTAAAATTTCTCGTTGATGGTATATGTATTACAAAAATTAAGGTTTTAGATCATCCTGGAGGGCTCTACTTCTAC GCTCTGGTAACTTGAAAGGTGACTAGTTAGGTTCTCTAATGTTGAAAGGCGAATATTTTGAAGTTTGGACAAGAAAGAAA GAAAAGAAGATTTTGAAGTTTGGACAAGAAAGAAAGAAAAGAGGGCAGCTCGAAGGATGAAAAC
CDS sequence (LotjaGi4g1v0035200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTCTCACTCAGGACCAAGAGTTTTGGGTTTATAGAAGGAGAGGCTGCTGCAGTTGCAGTTAACTCTAACTGGTG GAACGAGATTGATGAATCAGATCAATGGCAGAGAAGCATTTACTATACCCTTTGTGCCGCTTATGCATGTGTTTCCTTTG TTGCCCTGGTGCAATTGGTGCGCATTCAAATGAGAGTACCTGAATATGGGTGGACAACGCAGAAGGTTTTTCACTTGATG AATTTTGTTGTCAATGGATTGAGAGCTGTCCTTTTCGGCTTATACCAAAGTGTTTTTGCCATTAGACCAAAGGCACTGGA GCAGGTGGTGATGGAGGTTCCTGGTCTTCTTTTTTTCTCTACATATACATTGCTTGTCTTGTTCTGGGCTGAGATATATC ACCAGGCAAGAAGTGAACCAGCACATAAACTCAGACCTGCTTATTTTATTGTCAATGGATTTGTTTACTTTGTACAGGTT TGCCTCTGGATTTACATGAGCGTAAGTAAAACTGCCACTGGCATTGAAGCTGCTAAGCTCTTACTTGCAGTAATATCATT CTGTGCTGCTCTTGGATTTTTGTTGTATGGTGGAAGGTTGTTTTTCTTGTTGAGGCGCTTCCCCATTGAATCTCGAGGTC GCCAAAAGAAGCTTTATGAGGTTGGGTCAGTCACAACTATTTGTTGCACTTGTTTCCTGATAAGATGTGTTTTGCTTGCA ATTTCTGCATTTGAAGAGGATGCAGATCTTGATGTCTTGGATCATCCCATTCTTAACTTAGTATATTATTTGTTGGTAGA AATTGTTCCATCCGCGTTGGTGCTCTTCATCCTACGAAAGCTGCCCCCAAGACGAGTTTCTGATCAGTATCACCCCATTA GATGA
Protein sequence (LotjaGi4g1v0035200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFSLRTKSFGFIEGEAAAVAVNSNWWNEIDESDQWQRSIYYTLCAAYACVSFVALVQLVRIQMRVPEYGWTTQKVFHLM NFVVNGLRAVLFGLYQSVFAIRPKALEQVVMEVPGLLFFSTYTLLVLFWAEIYHQARSEPAHKLRPAYFIVNGFVYFVQV CLWIYMSVSKTATGIEAAKLLLAVISFCAALGFLLYGGRLFFLLRRFPIESRGRQKKLYEVGSVTTICCTCFLIRCVLLA ISAFEEDADLDVLDHPILNLVYYLLVEIVPSALVLFILRKLPPRRVSDQYHPIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 39 | 39 | - | – | |
| PANTHER | 16 | 294 | 279 | 1.1E-163 | ||
| PANTHER | 16 | 294 | 279 | 1.1E-163 | – | |
| Pfam | 24 | 294 | 271 | 5.3E-133 | ||
| Phobius | 40 | 64 | 25 | - | – | |
| TMHMM | 40 | 57 | 18 | - | – | |
| Phobius | 65 | 75 | 11 | - | – | |
| Phobius | 76 | 95 | 20 | - | – | |
| TMHMM | 77 | 99 | 23 | - | – | |
| Phobius | 96 | 114 | 19 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 115 | 134 | 20 | - | – | |
| Phobius | 135 | 145 | 11 | - | – | |
| TMHMM | 144 | 166 | 23 | - | – | |
| Phobius | 146 | 165 | 20 | - | – | |
| Phobius | 166 | 176 | 11 | - | – | |
| Phobius | 177 | 197 | 21 | - | – | |
| TMHMM | 181 | 203 | 23 | - | – | |
| Phobius | 198 | 217 | 20 | - | – | |
| Phobius | 218 | 240 | 23 | - | – | |
| TMHMM | 219 | 241 | 23 | - | – | |
| Phobius | 241 | 259 | 19 | - | – | |
| TMHMM | 256 | 278 | 23 | - | – | |
| Phobius | 260 | 278 | 19 | - | – | |
| Phobius | 279 | 294 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0035200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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