Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0038000.1

Overview

Field Value
Gene ID LotjaGi4g1v0038000
Transcript ID LotjaGi4g1v0038000.1
Lotus japonicus genome version Gifu v1.2
Description 3,4-dihydroxy-2-butanone 4-phosphate synthase; TAIR: AT5G64300.1 GTP cyclohydrolase II; Swiss-Prot: sp|P47924|RIBA1_ARATH Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic; TrEMBL-Plants: tr|A0A1J7I8M0|A0A1J7I8M0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0038000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:4574858..4579837) extracted from Lotus japonicus Gifu genome v1.2.

AATTTTTTTACTATATAGCTTTATATTATTATTGATTAATAAGATAATATATTAAATGGTAATTATTGAAAATAATTGCC AACAAATTTTCCATAATTTCATAGAAAGGTGCCATTTTGGAGACTTAAGCATTTTTAAAACATCCATATCACACCCTTCA GACACTAGGCTTCTCTGCTTCTTCCTTCCAACACAGAATTCATAGCACCAACCAACCTTGTTCAATTTCCGCACAAAGCA ATGGCTACAAGTTTCAATCTCTCTGCTATCTCGTCCCCAATGTATGCTTCCTTCTTTCATTCATTCTGTGTTCAATTTCA TTTTTTTAATCATTCTTTCTCTAACTGTGATGGCACACAACACATGCATTCTAGTTTCTAGGACCAACCTTTGTTAATTA TATATGTAAAATTCTCAACTGGGATAATTTGAAGCATCAAGCTTACAAATTTAACTTCAACATCTGATCTCCAATGTGAT CACAAAATTTTAGATTCCATGACTATTTTTTTCTTGGGGGTTCTTATTGTTTTAGGTCACAAACACTAATTGTACAATTC ATCTGCTCCTCTGTTCAATGCAGGAAATCCCAGCATTTCAAAATGTTCAATGGATTGAACAGGATAGATTCATCTGTGAT CAATGTACGTGGATCGGATTGGGCGTTTCCTCAGCTGAACTCTAAATTCCCCTTAAGTCAAAGTGCTGCTAGTAGAGTTA AAGCTGCATTTGGTGCTGGATCAATTGGAACTACGTTACAATCTGATGCAAGAGCATTTGCAACACTGGGAGCAGAAACG GGGCTAAGAAGCCATGAATTTTCTGATGACCTTGATGAATTTGATTTGGAAATTCCATCAGAAGGTTTTTCTTCCATTGC GGACGCCATCGAAGACATTCGGAATGGAAAGGTTGTTCTCTCTCTCTCACACACACACACTTAGGGTATTCTTTTAGTTT TCTGTTATTAACTGACATTAGTTTTTCAGATGGTGGTGGTAGTAGATGACGAAAACAGGGAAAATGAAGGGGACTTAATA ATGGCAGCAGAGCTGGTAACACCTGAGGCTATGGCTTTTTTTGTGAAGCATGGAACTGGGATAGTTTGTGTAAGCATGAA AGAGGAAGATTTGGAGAGATTGGATATTCCTTTGATGGTTTATAATCGGGATAATGAAGAACAGCACCGTACAGCATTCA CTGTGACAGTGGTATGTACAATTTTGTTGCATGCATCTTTTTATCTGGAGTAAGCCTATAGTTTCTTTAGAAACCTTTTT ACAATTGATTCTAAAACCCAAATTAATTCTGGAAAGAAGCTTTGTGAGTAGCTTCCAATGCAAGAATTGATTCTGAGAAA AAATAAGTTAATCCAAGTATTGATTCTGCACTCATATGAAGCGTTTAGCGGTCTTTAATGTAGATTTGAATGTGTTATGT TGTATTAGGAATTCTGTTTTGATGTAGTTCAGGAGTTTGTAAGTGTAATTTGCTATATTAACACATTACACTGCAAAGTG TTGTCAAATAGCCGATCACACGGCGCTATAGTGTAGAGCTTTAGGGCTCACCGCTATTCGATATTTGCGGCTACTTTCCA CTATTTTCGGCTCTGAGAGCTTGAAATAACGGTTTTTTTGCTTTCCGCTATTTTTCGCTATTCGCAATTAACGACCCTGA CATTGCACTTGTAGGATGCTAAGCACAGTACCACCACTGGGGTGTCAGCTCATGATAGGGCAACAACAATTTTGGCCCTT GCTTCCAAAGATTCAAAGCCAGATGATTTCAACCGCCCAGGTCATATTTGTCCACTAAAATACAGGGAAGGTGGTGTGTT CACGAGAGCTGGCCATACAGAAGCTTCAGTTGATCTTGCCATACTTGCTGGTGTGAAGCCTGTGGCAGTTCTGACTGAGA TTGTGGATGATGACGGTTCGATGGCTAGAACCGCTAGGCTTCGCCAATTTGCGGAGCGTGAAAATTTGAAAATTATATCT GTTGCTGACTTAATAAGGTAGAAATTTCAAAAATGTGCCAAAGTTTCCCAATGATGGTACTTATGGTTTTTGAGGCTACT ATCAGTCCATTATAATGGTTGTTCATGCTGCTCTTTCGTTACACAAATTAGCACTTATTTTTCTGGCAGGTACAAGAGAA AGAGAGATCAACTGATCGAGCTTGTTGGTGCTGCACAAATACCAACTACGTGGGGGACATTCAAGGCCTACTGTTATAAG TCACTTTTAGACGGGATTGAGCATGTTGCAATGGTTAAGGTAACAATGCATGTATTTATAGGGTTTATATTGAACCATAT GTAGTAGAAGAGATCGAATGAGTCAAATATGAGTTGTTGTCACTCAGGCTGGTCAATAGCGTGCAAATCTTTCGCGCGCT TTCGCGGTGGTGAGGGTGGAGCAGTGCTACCATAGTGGCGGATGGCCATCGCGTTGGTCGCACGTGCAAAAGCGACCAGA CTCCACTGAATATCAAAGAGATGGAGGCTCTAGAGAGAATTGCTTGGGATTAGGTTCAAAAAGTGAGTAATGTCCTCAGA ATTAAGACTTTAGGACTATTAGTTGAGGACATTTTTTGTTTTTTCGGTTCTATTAGTTGGGGGTTTTATTGGTTTTTCAG TTCTATCAGTTGGGGTATTTTTGGTATATCAATTTTTTTTATTTAACTTAGAGAGGCCCCAAAATACAAAACACATAGTC GTCTTCTTCCTCCTCTTTCTTTAGCACAGCGGTCATCGCACTATGCGTTATACCGCTATAGCGTTTTTTGGGTTGGCCGC TCCGCTCCGCTATCCGAAGTTGACAAGCCTAGGGCCACTATAATGTGCTTCAAAGAGATTGAATGGAAGTCTTGGGAAGT CACAAGGATCTAGTCACTCCCCAACTCACTTAAACTTCCCTTTTTACATTTTTAGATTGCTTGATTCAATACTAAACTTT TAGCCATTTTTTTGTTTGCCTGGTTATTTTTAAACAGGGTGACATTGGAGATGGACAAGATGTTCTTGTGAGGGTACATT CAGAGTGTCTCACAGGAGACATATTTGGATCCGCCAGATGCGACTGCGGACCCCAGCTTGCTCTTGGAATGCAGCAGATT GAGGCTGCTGGTAGAGGTGTGATGATGTACCTTCGCGGGCACGAAGGAAGAGGCATTGGGTTAGGCAACAAGCTTCGCGC TTATGAGCTAATAGAGGCTGGAAGGGACACTGTCGAAGCCAATGAGGAGTTAGGTTTTCCTGCTGACTGTAGGGAGTATG GAGCTGCTGCTCAGGTAATTGAACATTATTTTGTCAATTATTTCACCCTTTTAATAACATGTTTAAATCAAAATCAATAA TAAAAACTACTCACATAAGATTATCCCCATAATTGATAATAGCTTCGGAATCAATAGTAAAAGAGTTTACAAACATACAC TAAGTCAAGGTGATTACAATAATTATGAAGGACATTGTCTAGGAGCAATATAGAATTCTAGATGTTTCACTTGGTTGCAT TGAGTGGATTTGAATCTGAAATTGTTGTTAGACTTTTCAATTTCCATTTCCATAGTTTTTGCATTTTAAAGAAAAGCTAA AACAATGATCTTTGTATTCTATGATTCTCACATATTTTGGTACAAGAAGGAATAGAGTGACTTATCTGGACCCATTCTTG TGCCTTTCTTTATAGTTCTTGTATGGACTCTGATGTTTTTCTCCCCCCTTTTTTTGCAGATACTGAAGGACTTGGGTGTC CGTTCTATGAAGCTAATGACAAACAACCCTACAAAGTTTATTGGGCTCAAAGGTCATGGCTTGTCAATTTCTGGCAGGGT CCCGGTGTTATCATTGATTACAAATGATAACAAGAAGTACTTGGAGACCAAACGTGTCAAAATGGGTCATGTTTATGACG TCGAATTCAACAAGAAGTTGAACAACAATGACGACGGTGTTGATGGGGAAGCTCGTCGCGATGATGACTCTGCTGCTACT GCTGCTATAAGCCAATAAATTTGTTTCTTTTCTACCAGATTCAAACAATTCATATCATATTGCTGGTAGATTTAGACAGA AAAAATGCAATTTTTCTTTCAAATTTTCTAGTTCAGTTTCATATGTATTTTGTTATGGCCGACTCTTTAATCATAAAACT TTTTGTACCGGAATACAATTTTGCCTAAATAAATTTGAGGTTAACTCTTTTTGATTTCTTTGGTTACTTTTGTAGAGGTT TCATTTATGGTTCATTTGAATAGTTTCATCATACAAGGGTGGATGCTATTGTAAAAAGGTGATTTAAAGATTTTTTATGG GCAAATATTAGTTGTTAGTAATGTTAGTAAATTAGCCCCTCCTCATGTTCGAATCCAGAACCCTTCACATTTCATCCAAA CAAACCCTTATGCCCTCTAACTCTTACAACTTGAGCTAACTCTCGGGATCAAACTGATCTAAAGATTAATCTGTAACATT TGGCTTTGTACCTGTCAGTGCCGGGTTTGTACCGAGAACGGGTACGACAGCCAAAATGGAGTACTCATACAAAAGTAGGT GCTATTATAAAGATTTGAGGTTCATCTAAGTAAAAATTGACCTAAAGATTAATCAATAAATTGATACTGCATTAATAGTT CAATCAACGATGTGAGTAGTGAGTTGCTAACCTGTGAATCTGGTCAATGTTTCCTTGTTGGAGCTAAAAACCACCATTGA CAGTGCCACGAACCTCACCATGAATAGAGACACCACCCCGATGTGGATTGCTGATAAACCAAAAAACGAAAGAAATTGGT TGCCAAATGCTTTGGCCGCCGATGAGTTTTGTTCAGCCACCGCTTCTAGCTTCCCCATCCGTAGCTTCTCTCTCTCATTG TTGCAAAGCTCCAGCAACGGCAGAACTAAAACAAAAAATTCGAGTACATGGTAAATTTTGTCTCTAAAAGTTTTTGGGGT TGCAAGTTGCAACAAAAGAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0038000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTACAAGTTTCAATCTCTCTGCTATCTCGTCCCCAATGAAATCCCAGCATTTCAAAATGTTCAATGGATTGAACAG GATAGATTCATCTGTGATCAATGTACGTGGATCGGATTGGGCGTTTCCTCAGCTGAACTCTAAATTCCCCTTAAGTCAAA GTGCTGCTAGTAGAGTTAAAGCTGCATTTGGTGCTGGATCAATTGGAACTACGTTACAATCTGATGCAAGAGCATTTGCA ACACTGGGAGCAGAAACGGGGCTAAGAAGCCATGAATTTTCTGATGACCTTGATGAATTTGATTTGGAAATTCCATCAGA AGGTTTTTCTTCCATTGCGGACGCCATCGAAGACATTCGGAATGGAAAGATGGTGGTGGTAGTAGATGACGAAAACAGGG AAAATGAAGGGGACTTAATAATGGCAGCAGAGCTGGTAACACCTGAGGCTATGGCTTTTTTTGTGAAGCATGGAACTGGG ATAGTTTGTGTAAGCATGAAAGAGGAAGATTTGGAGAGATTGGATATTCCTTTGATGGTTTATAATCGGGATAATGAAGA ACAGCACCGTACAGCATTCACTGTGACAGTGGATGCTAAGCACAGTACCACCACTGGGGTGTCAGCTCATGATAGGGCAA CAACAATTTTGGCCCTTGCTTCCAAAGATTCAAAGCCAGATGATTTCAACCGCCCAGGTCATATTTGTCCACTAAAATAC AGGGAAGGTGGTGTGTTCACGAGAGCTGGCCATACAGAAGCTTCAGTTGATCTTGCCATACTTGCTGGTGTGAAGCCTGT GGCAGTTCTGACTGAGATTGTGGATGATGACGGTTCGATGGCTAGAACCGCTAGGCTTCGCCAATTTGCGGAGCGTGAAA ATTTGAAAATTATATCTGTTGCTGACTTAATAAGGTACAAGAGAAAGAGAGATCAACTGATCGAGCTTGTTGGTGCTGCA CAAATACCAACTACGTGGGGGACATTCAAGGCCTACTGTTATAAGTCACTTTTAGACGGGATTGAGCATGTTGCAATGGT TAAGGGTGACATTGGAGATGGACAAGATGTTCTTGTGAGGGTACATTCAGAGTGTCTCACAGGAGACATATTTGGATCCG CCAGATGCGACTGCGGACCCCAGCTTGCTCTTGGAATGCAGCAGATTGAGGCTGCTGGTAGAGGTGTGATGATGTACCTT CGCGGGCACGAAGGAAGAGGCATTGGGTTAGGCAACAAGCTTCGCGCTTATGAGCTAATAGAGGCTGGAAGGGACACTGT CGAAGCCAATGAGGAGTTAGGTTTTCCTGCTGACTGTAGGGAGTATGGAGCTGCTGCTCAGATACTGAAGGACTTGGGTG TCCGTTCTATGAAGCTAATGACAAACAACCCTACAAAGTTTATTGGGCTCAAAGGTCATGGCTTGTCAATTTCTGGCAGG GTCCCGGTGTTATCATTGATTACAAATGATAACAAGAAGTACTTGGAGACCAAACGTGTCAAAATGGGTCATGTTTATGA CGTCGAATTCAACAAGAAGTTGAACAACAATGACGACGGTGTTGATGGGGAAGCTCGTCGCGATGATGACTCTGCTGCTA CTGCTGCTATAAGCCAATAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0038000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATSFNLSAISSPMKSQHFKMFNGLNRIDSSVINVRGSDWAFPQLNSKFPLSQSAASRVKAAFGAGSIGTTLQSDARAFA TLGAETGLRSHEFSDDLDEFDLEIPSEGFSSIADAIEDIRNGKMVVVVDDENRENEGDLIMAAELVTPEAMAFFVKHGTG IVCVSMKEEDLERLDIPLMVYNRDNEEQHRTAFTVTVDAKHSTTTGVSAHDRATTILALASKDSKPDDFNRPGHICPLKY REGGVFTRAGHTEASVDLAILAGVKPVAVLTEIVDDDGSMARTARLRQFAERENLKIISVADLIRYKRKRDQLIELVGAA QIPTTWGTFKAYCYKSLLDGIEHVAMVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGPQLALGMQQIEAAGRGVMMYL RGHEGRGIGLGNKLRAYELIEAGRDTVEANEELGFPADCREYGAAAQILKDLGVRSMKLMTNNPTKFIGLKGHGLSISGR VPVLSLITNDNKKYLETKRVKMGHVYDVEFNKKLNNNDDGVDGEARRDDDSAATAAISQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21327:SF37
63 535 473 2.2E-268 –
PANTHER
PTHR21327
63 535 473 2.2E-268 –
Gene3D
G3DSA:3.90.870.10
101 313 213 6.0E-88 –
Hamap
MF_00180
107 311 205 38.036
IPR000422
Hamap
MF_01283
108 504 397 52.757
IPR016299
SUPERFAMILY
SSF55821
108 310 203 4.58E-79
IPR017945
TIGRFAM
TIGR00506
109 306 198 4.3E-75
IPR000422
Pfam
PF00926
114 306 193 6.3E-84
IPR000422
Hamap
MF_00179
312 508 197 38.941
IPR000926
SUPERFAMILY
SSF142695
312 483 172 1.96E-66
IPR036144
CDD
cd00641
313 504 192 1.23846E-106
IPR000926
Gene3D
G3DSA:3.40.50.10990
314 501 188 1.1E-70
IPR036144
TIGRFAM
TIGR00505
317 505 189 1.7E-68
IPR000926
Pfam
PF00925
319 482 164 6.7E-68
IPR032677
MobiDBLite
mobidb-lite
517 539 23 - –
MobiDBLite
mobidb-lite
517 531 15 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003935
Molecular function GTP cyclohydrolase II activity Catalysis of the reaction: GTP + 3 H(2)O = 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + diphosphate + formate + 3 H(+).
Subterm of
GO:0008686
Molecular function 3,4-dihydroxy-2-butanone-4-phosphate synthase activity Catalysis of the reaction: D-ribulose 5-phosphate = (2S)-2-hydroxy-3-oxobutyl phosphate + formate + H(+).
Subterm of
GO:0009231
Biological process Riboflavin biosynthetic process The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0038000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…