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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0042300 |
| Transcript ID | LotjaGi4g1v0042300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence; TAIR: AT5G64470.2 trichome birefringence-like protein (DUF828); Swiss-Prot: sp|Q9FGE9|TBL12_ARATH Protein trichome birefringence-like 12; TrEMBL-Plants: tr|A0A151SIG3|A0A151SIG3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0042300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4986705..4990987) extracted from Lotus japonicus Gifu genome v1.2.
AATTAATTCGTGATTTGTAGTGCAAAATACATGTAACACCCAACTTTTGAGTGAAAAAATGCTTCGGAAACCTTATTTCT GAAATATTTCGGAAACTAAGTTTCCGTAAGTGGGGTGACATTTTTAATGAGTAAGTGCTAAATCTAATGATCTTTGTCAA GCCTTCTCAATGTGGAGGTTTTGGCTCAGGCAATGAACTCAATTCCAGCATTAGAATGTCGCCAAAGCTACCCTCACATC TCATCCCTTCCCTCATCTTCCTAACACTCGTATCCCTCTACTTCCTCTCTTCACTCCTCTCTCTTCACACACCTTCATCT TCATATTCATCTTCTTCATCTTCAACCTCAATCTCCAAATGCAACCTCTACAGAGGCAACTGGGTCTTCGATCCCGATCG CACCCCACTCTACGACGACACCTGCCCCTTCCATCGAAACGCATGGAACTGCATCAGAAACCAGCGTCAAAATCTGAGCT TCATCAACTCCTGGAAATGGGTACCTCGGGGCTGCGATTTGCCCCGGATCGACCCGTTTCGGTTTCTGGGTTTGATGAGG AATAAGAATGTTGGGTTCGTTGGGGATTCGCTCAATGAGAATTTCTTGGCTTCGTTTCTCTGCATTCTAAGGGTTGCTGA TAAGGGTGCACGGAAATGGAAAAAGAAGGGTGCTTGGAGAGGTGCCTATTTTCCCAAGTTCAATGTCACTGTTGGTTATC ATCGTGCTGTTTTGCTCTCCAAATACCAGTAAGCATAAGATTCTTATTAAACAAAGTCTATTTGATTCAGAATTCTGCAT CTAGTTATGGAACTCATTGCCAAATAGTCTCTAATTGTCTAGTCTAGTGTGTATTTCACATGAAGGCTTAGGTTCCTTGG GATTTGTCTAGGTATTGAACTTATGGTAGAAGATTGATAGTAACCGACCGGTGCCATGACGTGTTGTTGGCACTCATTGT TGAGGGGTTCCACATTGACTAAAGATAAGGCTAATATAATCCTTATAAAGGGTAGAGCAATCGTCACCCACTTTTGGGTA GAATTAGACCTAGCTCAAATTTTTAAGATCTAATGGTTGAGTTTGATAGGTGGTTGTTTAAGGAGGTTTAAGTTTCGAAT TTGTTCATGGACTATGATAGTTGTGTTTTGAACTTTAAATTTGAGGGCTAATGATGCTATCTTAGCAAAGTGAAAATAGA GAGGAGCAATTTGTTCAATATTATTACTCAACTGAATGATACAACTACAGGGTGAGGTAACTTATATATATAAATGAAAG TTGCTCTGCAAACTGCAAAGTACATATGCACAGTTTTGTCAAATAGCGGTTATAGTGGCTCTATAGCGTAGCACTCTGAG GGATCACAGTTATTCCGCTATTGTCCGCTATTTTTTTCTATGAAGACTTGAAATAGCGGATTTTTGGCTTTCCGCTACTT TCGGCGATCCGCTATTTTCCGCGACCCGCTATTAACAACACTGCATACGCATGATCTTATCTAACTAATTGTAAGTTGTA ACTAACAGTAGCTAGAGCTAACAGACTGTCACTCAGATCTCTAACAGCCAACTAACTTGTTACCACTAATAATGCTCTAG CTGGCAGAATTTGTTGATTACGATTTGTTCTTGTTGGGTTGCTAATTGCTATAATTTGTCCTGCTGTCAGTTCAGTTGCT AATAGCATAATTCCAATGTATAGTTATCTTCCATATACTGACTGCAGGGTGCAGTCTATTTTATAATTCAGAAACATAAT TAGACATGCTTATGAAGATATACAAATACAACATAAAACCAGAAATATAAAGACTGTAACTGCACAGTACATATCAGAAA ATCTAAAAAAATACAATTTATTCGCCTGTTTAATTAAGGTGCATAACATGCCTGTTACATCTTCTGCATTGCATTAAGAA ATTCACTTTTCCCTGCATCATATTAGTCCCAATTTCCTTATCCACCAAAGAAAGCAATTATACTACAGTAAATACATGCA TCTGAAGGAAGATACAGTGCTGCTTGCTCCTCACATTTCCTGTGTAGGATTTTAACAACATATTATATTGTTATATTATA TAGTTCGCTTTGGTAAATATGTTTATGGATTTTGGATGGCCTCTTTTTCTGGTTTCAATATCACTACTGTGTTCAATTTT AACAGGGTGGGGGAGAGGACTTTTGAATTAACTAGTATCGATTTTATTGGACTCCTCCAGTGAATAATTGTCATAATTTG ACTTCATTAATAATGGGATAAAAAAATGGCAATCCAAAAAGTCATGATCTCTATTTTCTTCTGTCATTCGAGCATGCTCT CTAGACTTTCATCTTTCAATTTCCACTTTATTCCTCAAGAGGTTTTAATTTTTATAATTTTCATCTACTGACTCTACGTC AACTCTTGTTAAGTGTCTCCTATTTTCTAAGTGCTTGTTAATTTGATGTAATTCTTGAAATGGCAATCTTATGTGCTCAT TACTGATTAAACAAAGGTGGCAGCCAAAAAAATCTGAAGCTGGGGTGGAAGATCCATCAGAAGGTATTTATCGAGTTGAT GTTGATGTTCCTGCTGATGACTGGGCTAAAATTGCTGGCTTCTATGATGTCCTGGTGTTTAATACTGGTCACTGGTACTT CTCTCTAACTTTTCTTGAATTTTGAATTATAAAGAGTTTTGGCTGCCTTCATGCTCTATTAAAGAGTTGTTGAATGAATT AAATAGGTAATAATAGGGAAAACTTTAAAAAGAATAGGACATTACTTGTAATGCAATACATGTTTTGATGAAACTGATTA CTTTTGGGTTCCCCCTCTTATTTTTATCATCCATTCCAACTCTTGTTTTTATCTTCCTTTCCAATGATTGAATATATAGA TTTACTCAACTTTTTCTTTAACAGGTGGAATTATGACAAGTTCCCGAAAGAGAAACCTCTTATCTTCTATAAAGGAGGAC AACCAATATTCCCTCGGCTTGGGATGTCGGATGGACTTAAAGTTGTAATTAGTAACACAATCGCATACATACAAAAAGAA TTTCCTGGAAACACGCTTAAGTTCTGGCGTTTACAATCCCCAAGGCACTTTTATGGTGGAGACTGGAATCAAAACGGTAG CTGCTTATTCAACAAGCTGCTTGAGGAGAATGAGGTGTGTGTTCTGAAACTTGCCTTGATTTTATTAGGTTTTCCCCCAG CTAATCATTTTCCTGGTTCTCCAGATTCATTATACTGTGAAATTCCAATACTACAAGATATATTTTCTCAAATTTCATTG CCATGTACCAGAAGAATATCTCACATAAACATCCAACTCTAGATCGCATTTGATAAAAGTTTCTTTTTTTGTTTTAAATG ACTTGAATGCTGCACGTTTTTGAATGGCTTGTTCACTGTTGTTCTCTGCCCTGTTTGTTTTCAAGCATTGGCATTAAATA ATGTGGTTCTAATACCTGGACAGCTTGACTTATGGTTTGAACCTGGGAACAACGGAGTTAACAAGGAAGCAAGGCAGATG AATTTTGTGATTGAAGAGGCATTACGAGGCACCGATATCCAATTGCTCGACGTAACTCATTTAAGTGAATTTCGAGCCGA TGCTCATCCGGCGATATGGTTAGGAAGGAAGGATGCAGTTGCGATTTGGGGTCAGGATTGCATGCACTGGTGTTTGCCTG GTGTCCCTGACACATGGGTAGATATATTGTCACAACTGATACATGATCATCGTTTTGGAAGAAATGGTGGGATATAGAAA CTGGAGAAGCTAACAAATTCTATCTTACACACCATACACTGAAATTTTCCACTGGAGATGCTGATGGTGCCAAGTTCTGA GGACCAAGATATGAGTTTTTTGTGCATAAAATGTTGAACAAAAGCTTTGGCTCCCATGATCTTTGATGAAAGAAGCGATT AACTTGGTCGAGCATAAGCTGTATTGAAATCAGCTCCTTTATACAGTTTATCATAGGAACCTTGTAAAGAACTAGCATTG AATTCTTTCTGTCAGATTATTAGTCATATTGGGAAATCATTTATTCAAAATGGTGATATATAGGAATTGCATCACATTTG GCTAATAAGCTGATGGGGTGCAATTTAAAACACAGCGAGTGCATCAACCCTTTAATTAGTCAACTGTTAGCATTCTTGGA TTAGTTTTTTATTTTCTTATAATCAAATTTGACACACAAAAGTTATTCACAGATGATTCTTTGTAATAAGTCATAGCAAA CCATACTTGATTTAGCCAGTGATAGAATGAGAAAATTAAGGAC
CDS sequence (LotjaGi4g1v0042300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCTTTGTCAAGCCTTCTCAATGTGGAGGTTTTGGCTCAGGCAATGAACTCAATTCCAGCATTAGAATGTCGCCAAA GCTACCCTCACATCTCATCCCTTCCCTCATCTTCCTAACACTCGTATCCCTCTACTTCCTCTCTTCACTCCTCTCTCTTC ACACACCTTCATCTTCATATTCATCTTCTTCATCTTCAACCTCAATCTCCAAATGCAACCTCTACAGAGGCAACTGGGTC TTCGATCCCGATCGCACCCCACTCTACGACGACACCTGCCCCTTCCATCGAAACGCATGGAACTGCATCAGAAACCAGCG TCAAAATCTGAGCTTCATCAACTCCTGGAAATGGGTACCTCGGGGCTGCGATTTGCCCCGGATCGACCCGTTTCGGTTTC TGGGTTTGATGAGGAATAAGAATGTTGGGTTCGTTGGGGATTCGCTCAATGAGAATTTCTTGGCTTCGTTTCTCTGCATT CTAAGGGTTGCTGATAAGGGTGCACGGAAATGGAAAAAGAAGGGTGCTTGGAGAGGTGCCTATTTTCCCAAGTTCAATGT CACTGTTGGTTATCATCGTGCTGTTTTGCTCTCCAAATACCAGTGGCAGCCAAAAAAATCTGAAGCTGGGGTGGAAGATC CATCAGAAGGTATTTATCGAGTTGATGTTGATGTTCCTGCTGATGACTGGGCTAAAATTGCTGGCTTCTATGATGTCCTG GTGTTTAATACTGGTCACTGGTGGAATTATGACAAGTTCCCGAAAGAGAAACCTCTTATCTTCTATAAAGGAGGACAACC AATATTCCCTCGGCTTGGGATGTCGGATGGACTTAAAGTTGTAATTAGTAACACAATCGCATACATACAAAAAGAATTTC CTGGAAACACGCTTAAGTTCTGGCGTTTACAATCCCCAAGGCACTTTTATGGTGGAGACTGGAATCAAAACGGTAGCTGC TTATTCAACAAGCTGCTTGAGGAGAATGAGCTTGACTTATGGTTTGAACCTGGGAACAACGGAGTTAACAAGGAAGCAAG GCAGATGAATTTTGTGATTGAAGAGGCATTACGAGGCACCGATATCCAATTGCTCGACGTAACTCATTTAAGTGAATTTC GAGCCGATGCTCATCCGGCGATATGGTTAGGAAGGAAGGATGCAGTTGCGATTTGGGGTCAGGATTGCATGCACTGGTGT TTGCCTGGTGTCCCTGACACATGGGTAGATATATTGTCACAACTGATACATGATCATCGTTTTGGAAGAAATGGTGGGAT ATAG
Protein sequence (LotjaGi4g1v0042300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIFVKPSQCGGFGSGNELNSSIRMSPKLPSHLIPSLIFLTLVSLYFLSSLLSLHTPSSSYSSSSSSTSISKCNLYRGNWV FDPDRTPLYDDTCPFHRNAWNCIRNQRQNLSFINSWKWVPRGCDLPRIDPFRFLGLMRNKNVGFVGDSLNENFLASFLCI LRVADKGARKWKKKGAWRGAYFPKFNVTVGYHRAVLLSKYQWQPKKSEAGVEDPSEGIYRVDVDVPADDWAKIAGFYDVL VFNTGHWWNYDKFPKEKPLIFYKGGQPIFPRLGMSDGLKVVISNTIAYIQKEFPGNTLKFWRLQSPRHFYGGDWNQNGSC LFNKLLEENELDLWFEPGNNGVNKEARQMNFVIEEALRGTDIQLLDVTHLSEFRADAHPAIWLGRKDAVAIWGQDCMHWC LPGVPDTWVDILSQLIHDHRFGRNGGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| PANTHER | 25 | 416 | 392 | 2.5E-194 | ||
| PANTHER | 25 | 416 | 392 | 2.5E-194 | ||
| Phobius | 32 | 53 | 22 | - | – | |
| Phobius | 54 | 427 | 374 | - | – | |
| Pfam | 71 | 124 | 54 | 1.1E-15 | ||
| Pfam | 125 | 414 | 290 | 1.8E-77 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0042300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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