Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0046600 |
| Transcript ID | LotjaGi4g1v0046600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G26810.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q4PSQ5|PME66_ARATH Probable pectinesterase 66; TrEMBL-Plants: tr|V7B8X1|V7B8X1_PHAVU Pectinesterase; Found in the gene: LotjaGi4g1v0046600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5454547..5456564) extracted from Lotus japonicus Gifu genome v1.2.
GGAAGACATAATTATCTTTACCAATTGTATTTATAGATGTAAATGTATTGTTATTGTATCATAGTTCACCTAAACGTGAT CAAATACCATGGAGTTGCTTCCTCAACCAATGATTTCCCCTCTAATCCTGCTTGTTATTTGTTACTTTTATCTTGGAGCA GCCATAGATTGTGGTGGAAACCACATTTCAAAAACCATTACCATCGATAAATCTGGCAGTGGAGGAGCATTTGGAAGCAT TCAAGCTGGTATTAATTCTATAGAGAGTAACAATGCCCAGTGGGTTAAGATTCACATAAATTCTGGCGTGTACACGTGAG TTGAAATGTTGCTACTTCTTATATTCTCATAAATTATTAAATTTTACTGTTGTATTTGATCGTGTTGTAAAACTATGCAG GGAAAAAGTTTCAATTCCATATGATAAACCATGCATTATCTTAGAAGGAGAAGGCGGTCGCAATACAGTCATTTCTTATG GTGATACCCGAACACCTGCTAGCTGGGAGGCTACATTCACTTCAAGTCCACCTAATGTGATAGTGAGTGGCATCACCTTT GAGGTAAACACATTAATGACTAGATATGCCTACAAATTTGATAACTACTCAGTTGTTTAATTTCTAATGTATTGTTCTGT AATTGTAGAACACATATAATTTGGTAGGGGGTAATATACCGAGTATGAATCCCAAAGCGGACATTAAAGTAGCAGTGGCA GCTGTTGTAGCTGGAGACAAATCCTTCTTCTTCCAGTGTAGTTTCCTGGGTTATCAAGACACTCTCATTGCTGCGATGGG ACGCCATTACTATAAAGATTGCTACATTCAAGGTGAGGTGGACTTCATTGCTGGTGCCGGGCAATCTTATTTTGAGGTAA TACATAAATACAGATCGATCGATGAGTGTTAGCAGTAAGCTCTTTTTTATAATGATTTTTGAAAATCAAATGATGAAGCA TTAATTAGTTGTTATGTGGCTTTCTGTTTGTTGTAGGATTGCAAAATCAATGTCACACATGGACAGGGTTATGTTCCTGG TTTTATCACAGCTCAATCCAGGGCTTCACCAAATGACCCAAATGGTTTTGTTTTTGAGGGAGGTTCGGTTGATGGGACTG GTAAGGTGAATCTAGGAAGAGCATGGGGCCCTTGCTCGAGAGTTATATTTCATAAAACGTACCTTTCTTCAGTGGTGACC CGAAAAGGATGGAGCTTTTGGAACTTTCCTGGTCAAGTGTAAGTTTGAATCAGTGCATTCACTAAAAATGATAATAATGC AGTGTTGTTGATCATAACCTTTTATGTAGATAATGCCATATCATATTTGTTTGCTTTGGGAATTAGTGTAACAACTGTGA TATACAAAGTACAAATCACTAAGTAGTCAGCTCACTTTCAGACACCTTATTTAGAGGCGGTTTGTTTGTGGTGTTTACAA AACAACCACTAAATTAGGTGTCTGAGAATGAGCTAGCTACAATGTTGAGCGGTTTGTGTATTTTTATGGGATTGTATTGA TATAATATGCGATATGAAGAGACTTTTTTTATTTAACTTCTTAATTTGTAAACAAATTATTGCAGGGATAAGATTACCTA TGCAGAAGTTGACTGTACAGGACCTGGGGCTAATAGTCCCCTCCGTGTCACGTGGGAGAAGAATATAACTGCTTCAGAAC TACAAGAATATTCCAAATCATCTTTCATTGATGAAGATGGATGGCTTGCCAACATTCCAATTAAGTACTAGTAATTTTCT CAGTATTGCTGTGGAATCTGAGACAATGACTGATCAATGCTATCGATAGAATGACTCCTCAAACTTCATACTTAAGACTA GTGATTGATGAGATCAAGAGCGTAGCTTCTTTTTTGTACTTCTATTTTTTCACATACAAATAATTAAGGAGTCTAATATG TTAGATGATGTTTACAAATTTAACCATTTCATATGATTTCCATGGTGGATGGTGTCTACAAATTTATTTTATTCGGTAAT TCAATGCTCAATTTCAAA
CDS sequence (LotjaGi4g1v0046600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTGCTTCCTCAACCAATGATTTCCCCTCTAATCCTGCTTGTTATTTGTTACTTTTATCTTGGAGCAGCCATAGA TTGTGGTGGAAACCACATTTCAAAAACCATTACCATCGATAAATCTGGCAGTGGAGGAGCATTTGGAAGCATTCAAGCTG GTATTAATTCTATAGAGAGTAACAATGCCCAGTGGGTTAAGATTCACATAAATTCTGGCGTGTACACGGAAAAAGTTTCA ATTCCATATGATAAACCATGCATTATCTTAGAAGGAGAAGGCGGTCGCAATACAGTCATTTCTTATGGTGATACCCGAAC ACCTGCTAGCTGGGAGGCTACATTCACTTCAAGTCCACCTAATGTGATAGTGAGTGGCATCACCTTTGAGAACACATATA ATTTGGTAGGGGGTAATATACCGAGTATGAATCCCAAAGCGGACATTAAAGTAGCAGTGGCAGCTGTTGTAGCTGGAGAC AAATCCTTCTTCTTCCAGTGTAGTTTCCTGGGTTATCAAGACACTCTCATTGCTGCGATGGGACGCCATTACTATAAAGA TTGCTACATTCAAGGTGAGGTGGACTTCATTGCTGGTGCCGGGCAATCTTATTTTGAGGATTGCAAAATCAATGTCACAC ATGGACAGGGTTATGTTCCTGGTTTTATCACAGCTCAATCCAGGGCTTCACCAAATGACCCAAATGGTTTTGTTTTTGAG GGAGGTTCGGTTGATGGGACTGGTAAGGTGAATCTAGGAAGAGCATGGGGCCCTTGCTCGAGAGTTATATTTCATAAAAC GTACCTTTCTTCAGTGGTGACCCGAAAAGGATGGAGCTTTTGGAACTTTCCTGGTCAAGTGGATAAGATTACCTATGCAG AAGTTGACTGTACAGGACCTGGGGCTAATAGTCCCCTCCGTGTCACGTGGGAGAAGAATATAACTGCTTCAGAACTACAA GAATATTCCAAATCATCTTTCATTGATGAAGATGGATGGCTTGCCAACATTCCAATTAAGTACTAG
Protein sequence (LotjaGi4g1v0046600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELLPQPMISPLILLVICYFYLGAAIDCGGNHISKTITIDKSGSGGAFGSIQAGINSIESNNAQWVKIHINSGVYTEKVS IPYDKPCIILEGEGGRNTVISYGDTRTPASWEATFTSSPPNVIVSGITFENTYNLVGGNIPSMNPKADIKVAVAAVVAGD KSFFFQCSFLGYQDTLIAAMGRHYYKDCYIQGEVDFIAGAGQSYFEDCKINVTHGQGYVPGFITAQSRASPNDPNGFVFE GGSVDGTGKVNLGRAWGPCSRVIFHKTYLSSVVTRKGWSFWNFPGQVDKITYAEVDCTGPGANSPLRVTWEKNITASELQ EYSKSSFIDEDGWLANIPIKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| PANTHER | 5 | 339 | 335 | 2.1E-140 | – | |
| PANTHER | 5 | 339 | 335 | 2.1E-140 | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 341 | 316 | - | – | |
| Gene3D | 30 | 341 | 312 | 1.0E-92 | ||
| SUPERFAMILY | 33 | 337 | 305 | 1.17E-73 | ||
| Pfam | 38 | 330 | 293 | 4.2E-55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi4g1v0046600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…