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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0048400 |
| Transcript ID | LotjaGi4g1v0048400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter; TAIR: AT1G11260.1 sugar transporter 1; Swiss-Prot: sp|Q41144|STC_RICCO Sugar carrier protein C; TrEMBL-Plants: tr|A0A1J7FN91|A0A1J7FN91_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0048400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5807168..5810524) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCCGCTGTCGGAGCAATAAGCAATGGTGGGGGTAAGGAGTACCCCGGAAACCTCACTCCTTTCGTCACCGTAACATG CATCGTCGCCGCCATGGGTGGCTTGATCTTTGGTTACGATATTGGAATTTCCGGTAATAATAATTTCACATACAAAACTT AACTATAACACACGTACACTTTTATTTTTCGAAAGCAAAAGTGTATGGTGTTCAATAATAGTCGAGATACAAATCCTCTC GACAAATGATGTAGTACAAGTGTACAACGCTATAGTTTTATATTTTGATTCAGTTTTGCTGATTAATTCTGTGATATGGA TTTTGATCAGGTGGAGTCACCTCCATGGATCCGTTTCTGCTCAAGTTCTTCCCGTCGGTGTACCGGAAGAAACACGCCGA GAGCACCACCAACGAGTACTGCCAGTACGACAGCCAGACGCTGACGATGTTCACGTCGTCGCTGTACCTGGCGGCGCTTC TGTCGTCACTGGTGGCTGCCACCGTCACCAGAAAATTTGGCCGGAAACTTTCCATGCTTTTCGGAGGGTTGCTTTTCCTT GTCGGTGCCCTCATTAATGGCTTTGCACAGAAAGTTTGGATGTTGATCGTGGGTCGGATCTTGCTCGGGTTCGGTATCGG ATTTGCCAATCAGGTACTAATTAATCTCCCTCAAATCTTATCCTTTGGGATAATTATAAATTTGGTACAAATTTTAAAAT ATTTCCATAAAAAATTAGTATTTAATTTGAGTTTAAGTGTGGATATACATTGAAATCCACGTGTCAAACTCACTTCTACA TTAGCGCAGAGATTGATACCTCAGCGATACGTGAAATCAGATTGACGTTGACTCTAACGCCGAAACATGCATTAGAGAAC AAAGTTTGACATGAAAGTTAAAATCGAGCTCTTTTGTGTTTGATTCTTTCATTTGTTGTTTTGTTTATCTAATTTTTTAA TAATCAATAATTTAGACGTGTTGTTCCCTCTAATTTGTTTGTTTTGCTATATTTTATTACACCTCATTGTCTACAACTTT TTTGCCCGTTATAGACTTTTTTACTTATTTTTTTTTGGATAATATCAATTATGATGACGTCAGAGAAGACTCAATATATA AACTTATTTATGATATTCATTGTATTCAACATGACGTAAATGGAAATCTCAGACACATTGTAATGGGCATTAATGCAATT TAAAGGCATTCATTGAATATAATTATGGTTTTTTTTTCAGTTTTTTTTTTTGAAATTAATCCAAGCTAACTTTTAAAGAT TTTTTTTTTCAAAACGTTGATGATGATATGCTTAGTGCGTGGGCTACCGAAAAATTGATTTTTCAATGTGTGTGTGATTT TGCCTACTCCGCCAATAATTCGGTTGATTTTGACTTTGCTTTTGGAAACTATGCACGTTGGGACTTGTTTGGTTGGTGTG AAAAAGCAGGAATCTTCCCCTATTATTTTCTCTACATAACATGTGTTGAGAGTGATAGCTGGATTATGACACAAATTATG GCAACTTGCTCTTAGTGACATTTTTAATTTTATTCAAACAAGTCTATCATAATTATTGTGCCATGTTTTTCTTTGCATGT GATCATCACCTCGCTTAGCATTCCCACCACCGCTTGCATCATCTTACAAGCGTTGAATTTAAAACCTAGTTGGAGTTTTT AATTTCACATTTCTATTTTCCATTTGGTCTAACCAAAGACCAACAAGTGGCTGACTCAAGTAGAGTAGCGTTGTTACACT TGGAATATTACATTAGTGTTGTTAATTTGTAGTAACTTGTTATTAATAATTGTTACTTGATTTTGCTTTGTTAATTTTTT TTTTTCAAATTCTGTGATTAACAGTCTGTGCCGCTCTACCTCTCTGAGATGGCTCCATACAAATACAGAGGAGCTTTGAA CATTGGCTTCCAATTGTCAATCACAATTGGTATACTTGTAGCCAATGTGCTGAACTACTTCTTTGCCAAGATCAAAGGAG GATGGGGATGGAGGTTGAGTTTGGGTGGTGCTATGGTCCCTGCACTCATAATCACAGTTGGATCACTAGTCCTTCCAGAC ACTCCCAATTCCATGATCGAACGCGGTGACCGCGATGCGGCCAAGGCTCATCTTCAAAGAGTCCGCGGAGTGGATGATGT TGATGAAGAATTCAGCGACCTCGTGGAGGCTAGCGAAGCGTCAATGCAAGTTGAGCACCCTTGGAGGAACTTGTTGCAAA GGAAGTACAGACCCCACCTCACCATGGCCATATTGATTCCCTTCTTCCAGCAATTTACTGGCATTAATGTGATCATGTTC TACGCGCCTGTGTTGTTTAGTTCCATTGGGTTTAAGGATGATGCTTCTCTCATGTCGGCTGTGATCACCGGCGTTGTTAA TGTTGTTGCTACATGTGTCTCAATTTATGGAGTTGATAAGTGGGGTAGGAGAAAGCTTTTCCTCGAAGGTGGAGTTCAGA TGATGATATGCCAGGTAGGGCAATTCATTATGTACTTAATTTGCAAATAAACCATTTTAATTTGTGAACTACATTTTTCT TCGTTCAACAAAGCCTTTGTTAAATTGATTTGAGTGTCTAATTTCAGTATCTATTAATGTGCACAGGCCGTAGTTGCAGC TGCTATTGGAGCTAAGTTTGGAGTTGATGGGAACCCTGGTGATTTGCCAAATTGGTATGCTATAGTTGTGGTGCTCTTCA TTTGCATCTATGTAGCAGGGTTTGCCTGGTCATGGGGACCCCTTGGTTGGTTGGTGCCTAGTGAGATCTTCCCGCTCGAG ATTCGTTCGGCCGCGCAGAGTATCAATGTATCGGTGAACATGCTCTTCACCTTTTTTGTCGCCCAAATCTTCTTGAACAT GCTTTGCCACTTGAAGTTTGGCTTGTTCATCTTCTTCGGCTTCTTCGTGTTCGTGATGACGATCTTCATATACTTCTTCC TTCCTGAAACTAAGGGAATTCCAATTGAAGAAATGGGCCAAGTTTGGAGGTCACACCCATATTGGTCTAGATTTGTTGAG CATGAGGATCATGGCAATGGTGTTGAGATGGGCAAGGGAGCTGTTAAAAATGTGTAATTAGTCCATAAATTTTATTTTCT TCTCCATCAGTAACTAGTTTTTTTTTTTTTCTTTTCTTTTGTTATGAAACATACAATTGGTGAAAATTTCCAATGTCAGT ATCAAATTACCAATGTATTGAATTGCTCATGAAAATCAAAGGGTTATGTATGTTCAACAAACATTGATGGTTCTTTTTTC ACAAAAAGAGTACATAAGCTTATGTTCATTTGGTTGCTTCTTAGGTTACATAAATTATATCTGTTCTGTAGAGTTAG
CDS sequence (LotjaGi4g1v0048400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCGCTGTCGGAGCAATAAGCAATGGTGGGGGTAAGGAGTACCCCGGAAACCTCACTCCTTTCGTCACCGTAACATG CATCGTCGCCGCCATGGGTGGCTTGATCTTTGGTTACGATATTGGAATTTCCGGTGGAGTCACCTCCATGGATCCGTTTC TGCTCAAGTTCTTCCCGTCGGTGTACCGGAAGAAACACGCCGAGAGCACCACCAACGAGTACTGCCAGTACGACAGCCAG ACGCTGACGATGTTCACGTCGTCGCTGTACCTGGCGGCGCTTCTGTCGTCACTGGTGGCTGCCACCGTCACCAGAAAATT TGGCCGGAAACTTTCCATGCTTTTCGGAGGGTTGCTTTTCCTTGTCGGTGCCCTCATTAATGGCTTTGCACAGAAAGTTT GGATGTTGATCGTGGGTCGGATCTTGCTCGGGTTCGGTATCGGATTTGCCAATCAGTCTGTGCCGCTCTACCTCTCTGAG ATGGCTCCATACAAATACAGAGGAGCTTTGAACATTGGCTTCCAATTGTCAATCACAATTGGTATACTTGTAGCCAATGT GCTGAACTACTTCTTTGCCAAGATCAAAGGAGGATGGGGATGGAGGTTGAGTTTGGGTGGTGCTATGGTCCCTGCACTCA TAATCACAGTTGGATCACTAGTCCTTCCAGACACTCCCAATTCCATGATCGAACGCGGTGACCGCGATGCGGCCAAGGCT CATCTTCAAAGAGTCCGCGGAGTGGATGATGTTGATGAAGAATTCAGCGACCTCGTGGAGGCTAGCGAAGCGTCAATGCA AGTTGAGCACCCTTGGAGGAACTTGTTGCAAAGGAAGTACAGACCCCACCTCACCATGGCCATATTGATTCCCTTCTTCC AGCAATTTACTGGCATTAATGTGATCATGTTCTACGCGCCTGTGTTGTTTAGTTCCATTGGGTTTAAGGATGATGCTTCT CTCATGTCGGCTGTGATCACCGGCGTTGTTAATGTTGTTGCTACATGTGTCTCAATTTATGGAGTTGATAAGTGGGGTAG GAGAAAGCTTTTCCTCGAAGGTGGAGTTCAGATGATGATATGCCAGGCCGTAGTTGCAGCTGCTATTGGAGCTAAGTTTG GAGTTGATGGGAACCCTGGTGATTTGCCAAATTGGTATGCTATAGTTGTGGTGCTCTTCATTTGCATCTATGTAGCAGGG TTTGCCTGGTCATGGGGACCCCTTGGTTGGTTGGTGCCTAGTGAGATCTTCCCGCTCGAGATTCGTTCGGCCGCGCAGAG TATCAATGTATCGGTGAACATGCTCTTCACCTTTTTTGTCGCCCAAATCTTCTTGAACATGCTTTGCCACTTGAAGTTTG GCTTGTTCATCTTCTTCGGCTTCTTCGTGTTCGTGATGACGATCTTCATATACTTCTTCCTTCCTGAAACTAAGGGAATT CCAATTGAAGAAATGGGCCAAGTTTGGAGGTCACACCCATATTGGTCTAGATTTGTTGAGCATGAGGATCATGGCAATGG TGTTGAGATGGGCAAGGGAGCTGTTAAAAATAGTTAG
Protein sequence (LotjaGi4g1v0048400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPAVGAISNGGGKEYPGNLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMDPFLLKFFPSVYRKKHAESTTNEYCQYDSQ TLTMFTSSLYLAALLSSLVAATVTRKFGRKLSMLFGGLLFLVGALINGFAQKVWMLIVGRILLGFGIGFANQSVPLYLSE MAPYKYRGALNIGFQLSITIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGDRDAAKA HLQRVRGVDDVDEEFSDLVEASEASMQVEHPWRNLLQRKYRPHLTMAILIPFFQQFTGINVIMFYAPVLFSSIGFKDDAS LMSAVITGVVNVVATCVSIYGVDKWGRRKLFLEGGVQMMICQAVVAAAIGAKFGVDGNPGDLPNWYAIVVVLFICIYVAG FAWSWGPLGWLVPSEIFPLEIRSAAQSINVSVNMLFTFFVAQIFLNMLCHLKFGLFIFFGFFVFVMTIFIYFFLPETKGI PIEEMGQVWRSHPYWSRFVEHEDHGNGVEMGKGAVKNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| PANTHER | 8 | 504 | 497 | 1.0E-287 | – | |
| PANTHER | 8 | 504 | 497 | 1.0E-287 | – | |
| TIGRFAM | 14 | 485 | 472 | 2.0E-123 | ||
| Gene3D | 16 | 492 | 477 | 1.1E-127 | – | |
| Phobius | 19 | 39 | 21 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| ProSiteProfiles | 26 | 478 | 453 | 50.362 | ||
| SUPERFAMILY | 27 | 485 | 459 | 1.7E-60 | ||
| Pfam | 27 | 489 | 463 | 4.0E-138 | ||
| CDD | 29 | 476 | 448 | 0.0 | – | |
| PRINTS | 34 | 44 | 11 | 7.8E-33 | ||
| Phobius | 40 | 81 | 42 | - | – | |
| TMHMM | 82 | 104 | 23 | - | – | |
| Phobius | 82 | 104 | 23 | - | – | |
| Phobius | 105 | 110 | 6 | - | – | |
| Phobius | 111 | 130 | 20 | - | – | |
| TMHMM | 111 | 130 | 20 | - | – | |
| Phobius | 131 | 135 | 5 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Phobius | 136 | 158 | 23 | - | – | |
| PRINTS | 137 | 156 | 20 | 7.8E-33 | ||
| ProSitePatterns | 142 | 167 | 26 | - | ||
| Phobius | 159 | 169 | 11 | - | – | |
| Phobius | 170 | 193 | 24 | - | – | |
| TMHMM | 171 | 193 | 23 | - | – | |
| Phobius | 194 | 198 | 5 | - | – | |
| Phobius | 199 | 222 | 24 | - | – | |
| TMHMM | 203 | 222 | 20 | - | – | |
| Phobius | 223 | 283 | 61 | - | – | |
| Phobius | 284 | 308 | 25 | - | – | |
| TMHMM | 288 | 310 | 23 | - | – | |
| PRINTS | 294 | 304 | 11 | 7.8E-33 | ||
| Phobius | 309 | 319 | 11 | - | – | |
| Phobius | 320 | 342 | 23 | - | – | |
| TMHMM | 320 | 342 | 23 | - | – | |
| ProSitePatterns | 338 | 355 | 18 | - | ||
| Phobius | 343 | 353 | 11 | - | – | |
| TMHMM | 349 | 371 | 23 | - | – | |
| Phobius | 354 | 373 | 20 | - | – | |
| Phobius | 374 | 384 | 11 | - | – | |
| Phobius | 385 | 406 | 22 | - | – | |
| TMHMM | 386 | 408 | 23 | - | – | |
| PRINTS | 391 | 412 | 22 | 7.8E-33 | ||
| Phobius | 407 | 426 | 20 | - | – | |
| PRINTS | 414 | 426 | 13 | 7.8E-33 | ||
| Phobius | 427 | 447 | 21 | - | – | |
| TMHMM | 429 | 448 | 20 | - | – | |
| Phobius | 448 | 452 | 5 | - | – | |
| TMHMM | 453 | 475 | 23 | - | – | |
| Phobius | 453 | 474 | 22 | - | – | |
| Phobius | 475 | 518 | 44 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0048400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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