Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0048600 |
| Transcript ID | LotjaGi4g1v0048600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein TRANSPORT INHIBITOR RESPONSE 1; TAIR: AT3G62980.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q7XVM8|TIR1B_ORYSJ Transport inhibitor response 1-like protein Os04g0395600; TrEMBL-Plants: tr|I1KQQ6|I1KQQ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0048600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5895926..5901766) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGGGAAAAAGGATAAAAATGTAAAAGTATAACCTCTATTCATCTTCCCCAACCCACCCATGTTCTTCATCTTCCCC AAACCCACCCATGTTCTTCATCTTCCCCAACCCACTCGTCCACCTGAACAGTGCCGCCGGCGATGTCACCGCCCTGACCT CTCAGCTCCGGCGTGTTCCAGTTTCAGAACCTCTCCCCCACCTCCTCCTTCCCCTCACTCCCACAGTACCACCACCAAAA AATCCCGAAACCAGAAACTCAAAATTCCCCCATGGAAACAGAGCGAGCATGAGGAGGAAGAAGGCAGGGTCGCCGGCAAA CGGAAACAGAGCGAGTATGAGGAGGAAGTTTCAGATCTGGGTTCGATTCACATAACCAAAGAAGAAAAATTGAATCTTTT ATAGACAAAACTCAAAAACCCAGAAACAACAAAAAGAGAGAAGAAAGATTGAATTTTTATGAACTTTTAATGCTTCAAAC TGGCGATGATTGCAGTGTTGATGTAAGAATATGCTGTTCCGGAGCTTTGCACACTGGGAAACGCAAACACAGACCTAGGA AAAGAAAGGATAGGGATTCAAGTTGCATGTTTGATTGGTTGGAAGTATGTATCTTGAACTGAAAAATCGCTTCAAAAGTA GACACAATTTCCTTCGCTCTTGTTCAGAACCAATAAAGTTCTCTCAATTTAGTACCCAATTTACAAAACATACTCAATTC AGTTGTTACAGATGAGAAAACAAAATAGATAATGGATGAAGGTGTGAAATTTCTGTCAGCAGCCATGGCCAGTGGATGGA GATGTGAAATTTTTAGGGTTAAATTTTTTATATATATTTAATGAAAATTACCAAAGACACCCTTGGTCCATGGGTGGACC ATTTTCATAGGGTGGGCACCTCATTTTTCATACCTCAAACAATAATTCTTCAAGTATTAACACTTTCTCCACCTCAGCTA TTGCTATAAAATGCCAAGGGTGACAAGTTCCTATGGTCCTTTGGCTTCATCATCCAGTAAAACTAAAGTGATTTGAGTGC TTTGGTTCATGGTAAAGATCCGAACTTTGATTGACCCTGTCTTTTATTTTCTCTGTCATCACTCTTCTTATTCTAATATC CATTTATAACACACATACACACACTGCATCTTCTTCCACCTCTTCCCATTTTATGGATCTCAGATTCAGTGTCCTTCTTC TGGGGTCCCCAAAAATTGTTTACAGTTACACCCCAGTTAATTTTCTTTCTGTTTTCTTCAAATCATGGACCAAAGCTACC AGCTTTGTAGTCAAAGACTGAAGAACACACATCAAGCTAGTTTTCACCATTGAAAAGCACCCTTTCAAGGATTTTCTGTC ATTCGCAGATACCCTTTGTCTCACTTTGATTGAATCTTCTTTCTTATTGAGAAGATCTTTGTTTTCAGTTTTCAAATCTC ATTTTGATTCAAAAGGGTGCTATAAAGTTTTGATTTTTTCTCTTGGGTTTTGGAGATTCTGTGTTGAACATGGAGTGCAG GATCAGAAAGAAGGAATCTCCAGAACCAAACATCTTGAACCAAGCTTCACCTTTTCCTGATGAGGTGTTGGAACGAGTTC TTGGCATGGTGAAATCACGCAAGGATCGGAGCTCAGTTTCACTGGTTTGCAAAGAGTGGTACAACGCTGAGAGATGGTCA AGGAGGAGTGTGTTCATAGGGAACTGTTACTCTGTCTCTCCTGAGATCTTGACTCGCAGGTTCCCAAACATTCGTAGTGT TACACTGAAAGGGAAGCCTCGTTTCTCAGATTTCAACTTGGTTCCTGCAAATTGGGGTGCTGATATTCGTTCCTGGCTTG TGGTGTTTGCTGACAAGTACCCTTTGCTTGAGGAGTTGAGGCTCAAGAGGATGACTGTTTCTGATGAGAGCTTGGAGTTT CTGGCTCTTTCTTTTCCCTATTTCAAAGCTCTTTCCCTCCTGAGTTGTGATGGATTCAGCACTGATGGGCTGGCTGCAAT TGCCACTAGTTGCAAGTAAGAATTATTTGTTTTGAAACTCAATATCTTGTCTAGAAAGTACAAATAATTGTGATCTTTTA GGCTTTTACTTTGAATTTTTGGTTCCTGGAGGATGTTACTGTTGATCTTTCATTTCTTATGTCTAAGTGCATTTTTGGTA ATTCTTCTATGATCGAATCTTAATTAAACATCAATTCTGAGGACAAGTTTGTGTAAGCAGCTTCTGGCTGTCAGAATTGA TTCTGAGGAAAAATATGTTATAAGTTGTAATTTTTCTGTGAGCTATTTTTTAGCAGTGTTCTTCTAGTGAATTCCCTGTG GAGTGTGTATGTTTCCTGCTTGATGGGGGTGCTTTTCTTTTCAGTTTTGTGTTTTTACCAATCTGGTGATGTTACTGTTT TGATATGAGATTTTTGCTTTTAACTTTTAGATGATGTATGTTGTACATGTTTGGATTCATGTTTAGTCTTCTAGAATCAA TTCTCCTCCCACAAAAGCTACTAGGAGTAGCTTCTATCAGAATTAATTCCGCTTCTACCGTGAAAATTCACGGTGTATCC AAACATGCAAGTAGTACAGTTAATCAATGTCTTTACTTTTCCACATTTCAAACTTGACACTCTATTTGAAATTGCCTGTT CTAACCAATTAAAGTAATAGGTCAAGCTGTTGTAGCTATTTACTTCCAATTTTGACTTCAAGTTTTATCGCTCTTAGATG ATTCATTCTTTTCTTAGAATCTTTTTTTCCCTTTCTGGTTTGTTTGCCATTTTCACATGTTGTGCCTTGATACGATTTCC TATTGGTTGTGAATTACGTTGGCAGTGGAAATAGAATCTCATTACAGACCTGTGTTTTTAACAGTTGAGCATCAATTGAG TGGGAACATGGTAATATTCCCTATTATGCTGAGAAAAAAAAAAGAAGAAGCTGTGAGTCGGGGAATCTATTAGCTTTTAT TTCTCTATGAGGTGGCTCCTACCTGTGCTGCCCAGAATGAGGATATGCTTAGCTAAGAATTAAAATTGATTTTATCCCTA ATATGGTAGTTATTCTTTAGCTGGAGAGAAGTTGGTTTTGATTCTTTCACTATGATTAATTATATAATGCATACTCGAGA ATGCCAATGTGCAATTAATTCATAGGTCTATTGGAAATCACTGAATTACAGGAGATTAATAAACATCTGTAGAATTTGGA TTTCCTCGCAGTTTCAAAATTATCGTGTGTTGTAATGGGTAGCCTTCAAACTCTATGTACATGTGTTTAACCATAAATGT ATATTTTGGTAAGGAACATTGTATTAGTTGAACAAATTTATAAATGAAAGCATATGCACTGAGAAAAACATTGCTTACAT GAATTGTAACTACAGTTGTTTGCAAGAATTCTAATCTTCCAAAATTTTAATTCATGGGGTCCAAATCCTAATTCCTAATA GCAATACTAGCATCATGTTGAGTTTTTGGAATAATAGTTATTATCTCCATTATAAGAACTATTGTTGCTTAATCTTTCAT TTGGCCAGTAGATAATCTTCTGAATTCTACTTGGATGCAGGAATTTAACTGAGCTTGACATACAAGAGAATGGTATTGAT GACAAAAGTGGTAACTGGTTGAGTTGCTTCCCAGAAAGCTTTACATCATTGGAAGTATTGAACTTTGCCAACCTTCCCAA TGATGTAAATTCTGATGCACTAGAGAAGCTTGTCAGTAGATGTAAATCATTGAAGACTTTGAAGGTTAATAGAAGTGTAA CACTAGAACAGTTACAAAGACTACTTGTTCGCGCCCCTCAGTTATGTGAACTTGGTAGTGGTTCATTTTCAGAAGACGAT CTGACAGCTCAGCAGTATTCAGAGATTGAGAGTGCGTTCAACAATTGTAAAAACCTCCATACCCTTTCTGGTTTATGGGA TCCTGCAGAACAATATCTCCCTCTTCTGTACCCTGCTTGCACAAATCTTACTTTCTTCAATTTAAGTTATGCTCCTCTTG ACGGCGATGATCTTGCTAAGCTTCTTGTTCACTGTCCTAATCTTCGGCGCCTTTGGGTATGTCTTTGTTTTTGTTCTCTT TTGGTGTGTTTTTTATTCTATGGTTTCATTGATATTGAGTTTTTCCTTACTGACTAAATTACTGGTGAAGGTTGTGGACA CAGTGGAAGACAAGGGACTGGAAGCTGTTGGTTCACACTGTCCACTGCTTGAGGAACTGCGTGTTTTTCCAGCAGATCCC TTTGAAGATGAGGCCATTGGCCATGGGGTTACTGAATCAGGGTTTGTTGCTCTCTCTCGTGGATGCCCGAGACTTCACTA CGTGCTCTACTTTTGCCGTCAGATGACCAATGCTGCTGTTGCTACCGTTGTGCAAAACTGCCCCGACTTTACTCATTTCC GACTCTGCATCATGAACCCTGGTCAGCCAGATTACCTGACACATGAACCTATGGATGAAGCTTTTGGAGCAGTTGTTAAA ACTTGCAGTAAACTCCAGAGGCTCGCAGTGTCAGGTTTACTGACTGACCTAACATTCGAGTATATAGGGAAGTATGCCAA AAATTTGGAGACTCTTTCAGTGGCTTTTGCTGGAAGCAGTGATTGGGGCATGGAGTGTGTGCTGAGAGGCTGTCCAAAGC TAAGAAAACTTGAGATAAGGGACTGCCCATTCGGCAATGCAGCACTTCTGTCGGGTTTGGAGAGGTACGAGTCGATGAGG TCGCTGTGGATGTCTGACTGCAAGCTGACAATGAATGGGTGTAGATTGCTGGCGAAAGAGATGCCGAGGTTGAACGTTGA AGTAATAAAGGAAGAAGGATGCTATGAGGGTCCGGCTCAAAGAGTTTATGTTTATCGTTCTGTTGCTGGCCCAAGGAGGG ACGCCCCTTCATTTGTCCTCGCGCATTGCGGGCCCCACAATGCGCGAGGTTCAGGAAAGGGTTCAACCACTTGGTCTATT GTATGCACTATGCAGCCTTATCTTGTTTGTTACATGAGAGGCTATTTCCAGAACCTGTGACCTCAGTCATATGACAACAA CTTTTCAGTACTTGCTAGATTGGAGTTTGGAACCCTCCACACATTTCTCTTTCATAACTTATCCCTTTGAAATTTGTATT TGCACTAATCCTGTGTCTAATGATTGTATTATTCAGCCTCTGGATGTTTCCTTAGATGGCAAACCCCACATACTCATAAT CAAGCCTCAATAATGTGGAAGGTGGAAGCAAGAAAAGATGGGGGTAATGCAAGATCCAAACTCCAATCATGTTGCCAGTG CTTGAAACGTTGCCATTGATTGTTCTCTTGGATAAGGAAGGCCAAGACAAGCAATAAAGCCAGCTTTTCATATCCTATAA TTGCAATGAACCTGCTTCCTCAGACAAGCTAGGGCCACCAAGTGAAATAATGCAACCGTCCATCACAGATAAGCAAATGT GAGGCGAATAAAGGGGTTCCTGTGCAATCATTGTCAACAATATCCACATGAAGTGAAATATCTGTTACTGAAAGTTATGT AATTCCATAGGAGGATCATGGTTGGTTGATGAAATTTAATGGATGCTAAAGACATTTTATTGCAGATTGAAATATCTATT CTTGAAAATATAACTTTGCCTTCTCATTATGGTGGAAGTCATAGAAATAACTGAAATTTTTGATAAAAAGTGAATCCTCA ATCTTGCATGGTTGAATAAATTTTAGGATCAATTTTTATTGATGGGAACATCAAATTCATTGGATTGTGATAATGAAATG ATTTCATGAAATGAAGGTGATTTACTGCCAAGGTTGATTTATTTAGCTAAGCTTTATGATCAAAACAAGTGTATCCTAGC T
CDS sequence (LotjaGi4g1v0048600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTGCAGGATCAGAAAGAAGGAATCTCCAGAACCAAACATCTTGAACCAAGCTTCACCTTTTCCTGATGAGGTGTT GGAACGAGTTCTTGGCATGGTGAAATCACGCAAGGATCGGAGCTCAGTTTCACTGGTTTGCAAAGAGTGGTACAACGCTG AGAGATGGTCAAGGAGGAGTGTGTTCATAGGGAACTGTTACTCTGTCTCTCCTGAGATCTTGACTCGCAGGTTCCCAAAC ATTCGTAGTGTTACACTGAAAGGGAAGCCTCGTTTCTCAGATTTCAACTTGGTTCCTGCAAATTGGGGTGCTGATATTCG TTCCTGGCTTGTGGTGTTTGCTGACAAGTACCCTTTGCTTGAGGAGTTGAGGCTCAAGAGGATGACTGTTTCTGATGAGA GCTTGGAGTTTCTGGCTCTTTCTTTTCCCTATTTCAAAGCTCTTTCCCTCCTGAGTTGTGATGGATTCAGCACTGATGGG CTGGCTGCAATTGCCACTAGTTGCAAGAATTTAACTGAGCTTGACATACAAGAGAATGGTATTGATGACAAAAGTGGTAA CTGGTTGAGTTGCTTCCCAGAAAGCTTTACATCATTGGAAGTATTGAACTTTGCCAACCTTCCCAATGATGTAAATTCTG ATGCACTAGAGAAGCTTGTCAGTAGATGTAAATCATTGAAGACTTTGAAGGTTAATAGAAGTGTAACACTAGAACAGTTA CAAAGACTACTTGTTCGCGCCCCTCAGTTATGTGAACTTGGTAGTGGTTCATTTTCAGAAGACGATCTGACAGCTCAGCA GTATTCAGAGATTGAGAGTGCGTTCAACAATTGTAAAAACCTCCATACCCTTTCTGGTTTATGGGATCCTGCAGAACAAT ATCTCCCTCTTCTGTACCCTGCTTGCACAAATCTTACTTTCTTCAATTTAAGTTATGCTCCTCTTGACGGCGATGATCTT GCTAAGCTTCTTGTTCACTGTCCTAATCTTCGGCGCCTTTGGGTTGTGGACACAGTGGAAGACAAGGGACTGGAAGCTGT TGGTTCACACTGTCCACTGCTTGAGGAACTGCGTGTTTTTCCAGCAGATCCCTTTGAAGATGAGGCCATTGGCCATGGGG TTACTGAATCAGGGTTTGTTGCTCTCTCTCGTGGATGCCCGAGACTTCACTACGTGCTCTACTTTTGCCGTCAGATGACC AATGCTGCTGTTGCTACCGTTGTGCAAAACTGCCCCGACTTTACTCATTTCCGACTCTGCATCATGAACCCTGGTCAGCC AGATTACCTGACACATGAACCTATGGATGAAGCTTTTGGAGCAGTTGTTAAAACTTGCAGTAAACTCCAGAGGCTCGCAG TGTCAGGTTTACTGACTGACCTAACATTCGAGTATATAGGGAAGTATGCCAAAAATTTGGAGACTCTTTCAGTGGCTTTT GCTGGAAGCAGTGATTGGGGCATGGAGTGTGTGCTGAGAGGCTGTCCAAAGCTAAGAAAACTTGAGATAAGGGACTGCCC ATTCGGCAATGCAGCACTTCTGTCGGGTTTGGAGAGGTACGAGTCGATGAGGTCGCTGTGGATGTCTGACTGCAAGCTGA CAATGAATGGGTGTAGATTGCTGGCGAAAGAGATGCCGAGGTTGAACGTTGAAGTAATAAAGGAAGAAGGATGCTATGAG GGTCCGGCTCAAAGAGTTTATGTTTATCGTTCTGTTGCTGGCCCAAGGAGGGACGCCCCTTCATTTGTCCTCGCGCATTG CGGGCCCCACAATGCGCGAGGTTCAGGAAAGGGTTCAACCACTTGGTCTATTGTATGCACTATGCAGCCTTATCTTGTTT GTTACATGAGAGGCTATTTCCAGAACCTGTGA
Protein sequence (LotjaGi4g1v0048600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MECRIRKKESPEPNILNQASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRFPN IRSVTLKGKPRFSDFNLVPANWGADIRSWLVVFADKYPLLEELRLKRMTVSDESLEFLALSFPYFKALSLLSCDGFSTDG LAAIATSCKNLTELDIQENGIDDKSGNWLSCFPESFTSLEVLNFANLPNDVNSDALEKLVSRCKSLKTLKVNRSVTLEQL QRLLVRAPQLCELGSGSFSEDDLTAQQYSEIESAFNNCKNLHTLSGLWDPAEQYLPLLYPACTNLTFFNLSYAPLDGDDL AKLLVHCPNLRRLWVVDTVEDKGLEAVGSHCPLLEELRVFPADPFEDEAIGHGVTESGFVALSRGCPRLHYVLYFCRQMT NAAVATVVQNCPDFTHFRLCIMNPGQPDYLTHEPMDEAFGAVVKTCSKLQRLAVSGLLTDLTFEYIGKYAKNLETLSVAF AGSSDWGMECVLRGCPKLRKLEIRDCPFGNAALLSGLERYESMRSLWMSDCKLTMNGCRLLAKEMPRLNVEVIKEEGCYE GPAQRVYVYRSVAGPRRDAPSFVLAHCGPHNARGSGKGSTTWSIVCTMQPYLVCYMRGYFQNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 17 | 58 | 42 | 8.4E-20 | – | |
| Pfam | 20 | 59 | 40 | 1.9E-20 | ||
| PANTHER | 21 | 582 | 562 | 0.0 | – | |
| PANTHER | 21 | 582 | 562 | 0.0 | – | |
| SUPERFAMILY | 37 | 549 | 513 | 1.33E-36 | – | |
| Gene3D | 59 | 586 | 528 | 5.3E-169 | ||
| Pfam | 79 | 125 | 47 | 2.0E-21 | ||
| SMART | 117 | 141 | 25 | 280.0 | ||
| SMART | 142 | 167 | 26 | 47.0 | ||
| Pfam | 167 | 184 | 18 | 0.16 | ||
| SMART | 327 | 350 | 24 | 150.0 | ||
| SMART | 386 | 410 | 25 | 20.0 | ||
| SMART | 446 | 469 | 24 | 56.0 | ||
| SMART | 495 | 519 | 25 | 51.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0048600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…