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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0050300 |
| Transcript ID | LotjaGi4g1v0050300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cotton fiber expressed protein; TAIR: AT1G61260.1 cotton fiber (DUF761); Swiss-Prot: sp|B5RUP5|EIF3A_DEBHA Eukaryotic translation initiation factor 3 subunit A; TrEMBL-Plants: tr|I3SM49|I3SM49_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0050300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6101766..6102881) extracted from Lotus japonicus Gifu genome v1.2.
CACGATTTTCAATTCCAAAACTCACTTATCCAAAATCCTTCTCTGCAGGTATTACAAATGTTGTCACTCCTCCCCGCTCT CAAGCTCCTCCTCATCTCCACCGGCGTTCTCTTCGCCGCACATGGAGTCCATGTCTCAGTTCCTGTTATCACAGACTTCG TGGTCACTCACGTGTCCCTCACATGGCACCTCATCCTCTCGTGCCAGCAGCTAAACCCACCCTACCTCTTCCTCCTCCTC AACGCCATCATCATCACCATAGCTGCCTCCACAATGTTCCATAACTCCCTCCCTCCTCCTCCCTCACACACTCCGCCGCC ACCACCTCCTCCTCCTCCTCCTTACATAGCAGAAGATGAAGAAGAAGAAGAATATCCACTGCCTGCACCCATTGATGTGA AGGCGGTGGTGGTTAACGGCGTGTCCACGGAGGAAGACGGATTTATAACGGAGTCTTGGACACCTCCGTCTTCCTCCATG TCGATACCTCCGTTCTCCTTCCCAGATTCACCTCCGGACTCTGCGGACGTGAATGCACCTGCGATGGAGGATGTGTGGAG GGCGATAACGGAGTGTCGTCATCAGAAAATGAAGAGATCGGAGGCCCTGCTTGATGAGAGGAAGAGGGAGAGACTAGTAA GGAGGACAGAGCCGAGTCGCTACGAGTTGAACCAGCGCGTTGAGGAGTTCATAAGGAAGTTCAATGAGGAGTTGAGACTG CAGAAGAAGCATGACCATGACTCAATTTCGGAATCGGAGCAATATGGAGATTATGATCATATACAGTTTGATCCGCCACC TCTTTCTGTATAGTGGAGATAACTACTATTATTATTAGAGAAAGTTCTTACATGGAAGGATATTTTGCTGGATTTAGAAA ATATATATACAAAAATATTAACTAATAAATGGGGCTAAGTATTGATATTTTTTTCTTAAATATGTTTTGGGTTCCTGTAA TATACCATGTTATGGTTGTTTTTTGTTTTTGATATGGTTGTAGTATTTTTAAAATTATTTTTCCGTTTTTCATCCTCGAA TAGTCGTTTTGTTTTTCGTTCTTGATAAATTTTTTCAATTCAAATTAACATATGGAAGTTCAGATTAGCATTAGAC
CDS sequence (LotjaGi4g1v0050300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTCACTCCTCCCCGCTCTCAAGCTCCTCCTCATCTCCACCGGCGTTCTCTTCGCCGCACATGGAGTCCATGTCTC AGTTCCTGTTATCACAGACTTCGTGGTCACTCACGTGTCCCTCACATGGCACCTCATCCTCTCGTGCCAGCAGCTAAACC CACCCTACCTCTTCCTCCTCCTCAACGCCATCATCATCACCATAGCTGCCTCCACAATGTTCCATAACTCCCTCCCTCCT CCTCCCTCACACACTCCGCCGCCACCACCTCCTCCTCCTCCTCCTTACATAGCAGAAGATGAAGAAGAAGAAGAATATCC ACTGCCTGCACCCATTGATGTGAAGGCGGTGGTGGTTAACGGCGTGTCCACGGAGGAAGACGGATTTATAACGGAGTCTT GGACACCTCCGTCTTCCTCCATGTCGATACCTCCGTTCTCCTTCCCAGATTCACCTCCGGACTCTGCGGACGTGAATGCA CCTGCGATGGAGGATGTGTGGAGGGCGATAACGGAGTGTCGTCATCAGAAAATGAAGAGATCGGAGGCCCTGCTTGATGA GAGGAAGAGGGAGAGACTAGTAAGGAGGACAGAGCCGAGTCGCTACGAGTTGAACCAGCGCGTTGAGGAGTTCATAAGGA AGTTCAATGAGGAGTTGAGACTGCAGAAGAAGCATGACCATGACTCAATTTCGGAATCGGAGCAATATGGAGATTATGAT CATATACAGTTTGATCCGCCACCTCTTTCTGTATAG
Protein sequence (LotjaGi4g1v0050300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSLLPALKLLLISTGVLFAAHGVHVSVPVITDFVVTHVSLTWHLILSCQQLNPPYLFLLLNAIIITIAASTMFHNSLPP PPSHTPPPPPPPPPPYIAEDEEEEEYPLPAPIDVKAVVVNGVSTEEDGFITESWTPPSSSMSIPPFSFPDSPPDSADVNA PAMEDVWRAITECRHQKMKRSEALLDERKRERLVRRTEPSRYELNQRVEEFIRKFNEELRLQKKHDHDSISESEQYGDYD HIQFDPPPLSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| PANTHER | 8 | 110 | 103 | 9.9E-29 | – | |
| PANTHER | 8 | 110 | 103 | 9.9E-29 | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 14 | 20 | 7 | - | – | |
| Phobius | 21 | 29 | 9 | - | – | |
| Phobius | 30 | 49 | 20 | - | – | |
| Phobius | 50 | 55 | 6 | - | – | |
| Pfam | 51 | 71 | 21 | 3.2E-7 | ||
| TMHMM | 52 | 74 | 23 | - | – | |
| Phobius | 56 | 74 | 19 | - | – | |
| Phobius | 75 | 251 | 177 | - | – | |
| MobiDBLite | 77 | 104 | 28 | - | – | |
| MobiDBLite | 79 | 96 | 18 | - | – | |
| PANTHER | 175 | 224 | 50 | 9.9E-29 | – | |
| PANTHER | 175 | 224 | 50 | 9.9E-29 | – | |
| Pfam | 203 | 224 | 22 | 3.6E-8 | ||
| MobiDBLite | 222 | 251 | 30 | - | – | |
| MobiDBLite | 222 | 239 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0050300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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