Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0053000 |
| Transcript ID | LotjaGi4g1v0053000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fiber protein Fb34; TAIR: AT1G61065.1 1,3-beta-glucan synthase component (DUF1218); Swiss-Prot: sp|Q8BMF5|GRIK4_MOUSE Glutamate receptor ionotropic, kainate 4; TrEMBL-Plants: tr|V7CPW9|V7CPW9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0053000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6426035..6428966) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAACGTGAGAAAAGTAATTAGCAGAAGACATTGAAGAGTTGTACCAGAAGAGGAGAGGTCGTAGAAGTCTAGAAGA ATCCCAAAAGAAGTTGCACACAATAATTTGGGAAGTGGGCCGACAAGAGAGTAATTTGTGGGTGGGCTTATTTTAGGTGG GTTGTGTGAAGGGTCTTTGGTTGCTTGGCCATCTTCTATTTTTACACTGCTGGCAGACAGCAGAAACCACCCCACTTTAA CCAAAAGCCATTTAAATAAATTATCTTTCTTAATTATCATTAATCAAAATAAATACTAACAATAAGATGACTGAACTGAA AATAATCATATAAATAAATGTCAGCACATGATTCGTCGAACTAAAGTACTACTAGAAAGCAAGCTTGCAAAGACAGCCAA AAGTTGCCCCTTGGAATCGTTGTGGATCTTGAGCTATGGCTTCGTCTCTGGTACTAGCGGTGGTGTTTTTGTTTGATATC ATTGCTTTTGCTCTTGCTGTTGTTGCTGAACAGAGGAGAAACACTGTGAGTCACTTAGAATTTGTTATTTCTTTTAATAA TATCTGGATTTAGTTGGTGTAGCTATGCATTATATTTTGGTCAAGTAACATAACATCTGAATAGGAAAATCAAAGGGCAA TCATGATATGATATCCATTTTTTTTTTGAATTTGGTGATAGACTGATAGTGATAAATCTTTCAAAGGGTCAGTTTTTCAC TGTTTACTTAGTCTGTTCTATGTTTGCTGAGTTTTCCTTGGCTTCATGTGGAAATTTGACGGGACATGTAGTAATTCTGC ATATAGTAGTTTTCTTTTGCGAAAATTTAATACATATTAAGCATAATCAACATTGACTAAATGACGTAGGTGACATAAGA ATTTTGAGGGGGGCAACTACACCATTTGAATACCATTCTATTAAGGAATTTTTTTTTATCTTGGTAGGTGATTGCCCCTT ATCTTCCACCTAGTTCTGTCCCTTCTTTTCACCAAAACATATTGATAGGGGTGTTTCGGAATGCTAGGAACTTAAAAGCC TGAGAAATTTGGTAACAAACACTGCCTAAACACTCAATCAGTAGAGCTTGCTCCGTTGCTTGTCAAATTTGACAACTCTA ATTAGGATAATTTTTTGTGAACTCAGACCTTCTATGCACCACAACCTATATCCCTTCACCCTTGCGCATTACCTAAGAAT GCGCACTTCTTTGCCCTCGGCTCCAGCTTACCATCCCTCACATGAGTATATGCAGGGCATATTGGAATGAGCTTAACTGC TTAAGTGAGTAACTAAATATAAGCATATGTGAGCTTATAAGCTTGATGCTAACAGCTTGTGAGTAGCTTGTGTATATGTG TGCATTCAGTGACAAAAAGTTGCAATTTTATACTATCAAAGATGTAATTTATATATCAATATTACTTAGAAAGCTGTACT TTAATTTAGAGAATTTGACTTCATGTTCTAGCATTAAGATGTCGATTACATACTAGCTTAATGAACTCAACAAATACTTA AAGGACAAATTTAAGTAGGCACAAGAAAATAGTCATGTTATAAACATGTTAAGCAATAAACAAGCCAAGTTCCAGGTTCC AGCTTCAAATGCTCGGTTTGGCTCAACTCTTTCAAACCTCCCTCAAAGCCCATGAGCACAAAAATTTCACGAGGTATTGT CAAATATTGACCAATACTTTCCCCATGGATCTGGTGTTCTGTAGTGTTTCCCTGCATAGTAGGTGTGAAGTCACAATGTG ATAGAAGCAAGTTGTCAAAACTGAAAAAAAAATCTTTGCAATGTTGAAATGGGTTTACTTGAATCTAATTAATTGTTCTG CTGACAGGCCTCATTACTCCGAAATGCTGAAGGTAGAGAGTACTGTCAATATGATTCCGACATTGCAACCGGCCTAGGTG TGGGGTCCCTCTTCATTCTAGTTTCCTGTCAAGTGATCATCATGGTTGTTACTAGATGCCTGTGCTGTGGGAAAGCTATG AGACCCAGTGGATCCCGATCATGGGCAATTTGCTTATTCATCACTACCTGGTATGTCTTAATTTTTGGTCTTACAGACAA AACATTTCTAGGGAACAAGCAAGCACCAATATTAAATGACCAGATTTGCTGTTTTCCTTTGTTTCCAATGATTAAATGTG TGTTTGTGCAACGTGAACTGACTGCCCCATCTATCAGAGTTCTGTTTATTTTTTGTCTTGAAGTGAGTGCTAACGTCCGT TTACACGGGTGTTAAGGGATATCTAAACATAGCCTAATGTGTCGTGTTGTTATGTTGATGATTCAGGTTGACATTCATTA TTGCTGCTTCGTGCCTACTAGCCGGTTCTGTGCGTAATGCATACCACACTAAGTATCGGGATCTGATGGGAGATAACGCG CCTTCATGTCAAACGTTGAGGAAGGGAGTGTTTGGAGCTGGAGCTGCCTTCATTGTTTTGACAGGCATTGCCTCGGAGCT TTACTATGTTAGTTTTTCAAAAGCCAATAATGGCCCCCCTCCCTATGCTAGGGACACTGGTGTGAGGATGACCAGTTTGT AATGCATATATATACCACTTCGGACTTTGATGTGGGGATAATCTTTGTATTAAGATTGGTTTCCATGGATGTGAAAGCCT ACTTGTAAATTATGAAGCTCGGTTGAAAAGGAATCGATTGGTTTCCATGGATGTGAAAGCCTACTTGTAAATTATGAAGC TCGGTTGAAAAGGACTCTGATGTCTAGACTTAAGTGTTCTTTATTTCATTTCTTATGCCTCTTTATTTGAAGTCTCACGT TATTAGAAGTCTCACATTGAGAAGAGATATGACTAAGATAGTCCTTATAAAAAGTAGAACAACCCTCACCTTTATTGTTT CTCTTCAAGTTCATTAAAGTGTTAAAATTTGATTTGTAAATCTCTCGCTCTG
CDS sequence (LotjaGi4g1v0053000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCGTCTCTGGTACTAGCGGTGGTGTTTTTGTTTGATATCATTGCTTTTGCTCTTGCTGTTGTTGCTGAACAGAG GAGAAACACTGCCTCATTACTCCGAAATGCTGAAGGTAGAGAGTACTGTCAATATGATTCCGACATTGCAACCGGCCTAG GTGTGGGGTCCCTCTTCATTCTAGTTTCCTGTCAAGTGATCATCATGGTTGTTACTAGATGCCTGTGCTGTGGGAAAGCT ATGAGACCCAGTGGATCCCGATCATGGGCAATTTGCTTATTCATCACTACCTGGTTGACATTCATTATTGCTGCTTCGTG CCTACTAGCCGGTTCTGTGCGTAATGCATACCACACTAAGTATCGGGATCTGATGGGAGATAACGCGCCTTCATGTCAAA CGTTGAGGAAGGGAGTGTTTGGAGCTGGAGCTGCCTTCATTGTTTTGACAGGCATTGCCTCGGAGCTTTACTATGTTAGT TTTTCAAAAGCCAATAATGGCCCCCCTCCCTATGCTAGGGACACTGGTGTGAGGATGACCAGTTTGTAA
Protein sequence (LotjaGi4g1v0053000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSLVLAVVFLFDIIAFALAVVAEQRRNTASLLRNAEGREYCQYDSDIATGLGVGSLFILVSCQVIIMVVTRCLCCGKA MRPSGSRSWAICLFITTWLTFIIAASCLLAGSVRNAYHTKYRDLMGDNAPSCQTLRKGVFGAGAAFIVLTGIASELYYVS FSKANNGPPPYARDTGVRMTSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 180 | 180 | 1.2E-94 | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| PANTHER | 1 | 180 | 180 | 1.2E-94 | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 14 | 21 | 8 | - | – | |
| Phobius | 22 | 54 | 33 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 55 | 76 | 22 | - | – | |
| Pfam | 58 | 151 | 94 | 1.8E-25 | ||
| Phobius | 77 | 87 | 11 | - | – | |
| Phobius | 88 | 111 | 24 | - | – | |
| TMHMM | 91 | 113 | 23 | - | – | |
| Phobius | 112 | 138 | 27 | - | – | |
| Phobius | 139 | 159 | 21 | - | – | |
| TMHMM | 139 | 161 | 23 | - | – | |
| Phobius | 160 | 182 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0053000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…