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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0053100 |
| Transcript ID | LotjaGi4g1v0053100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dof zinc finger protein; TAIR: AT1G28310.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q9FZA4|DOF14_ARATH Dof zinc finger protein DOF1.4; TrEMBL-Plants: tr|V7CQU0|V7CQU0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0053100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6431589..6433514) extracted from Lotus japonicus Gifu genome v1.2.
TCGCTTGTCAACTTCGTAATTGTATTGGTGGCCAAGTCTATTTAATTGAATTATTATAGCATACTACAGCATCATGCAAC ATCTACGTTCATTCTACACATAGAGCACTTTCTACGGTCTTCAACCTTCCACGTGTCAACCACCCACCTTCTCCTTAGGG GTTAAGTTTCTCTCTCTTTCCCATTCTATAATATAGCAGAAAGAAAACTGAACTCCTAGCTTGTTACCAAATTCTGCATT AAAAAAATTTATAGGATTGCCTCATCTACTATTTCACACACCTCCACAAATAGTAATCAATCCCTTGCATTCACTGCAGT AGTCATCAATCTGTTACATTCACGCATTCATGAAACTTGGATCATAGGATTAAGATTTGTCTACTCATATTTTTCATTAA AATCAGACAGTATATATATCTTACGGTTTAAGGTGTCTGATCAAGATCGAATGACTCAATACATTAACTGCGTGAATTTA GGACCTGGAATGAAGGCAATCCAAATTGCATAAATTCCAAGTAATTTTCTCTGACCTTCTTGTTTATTATTGTTAATTAT TATTGGTCTTATAATCTTATTTTACAGATAGATAAGTTCATAAATAGGCATTAAATCACATGCTCACCTCTTCTCAGCTT CTTCATAAGCATTTCCTTCCCTTGAACCACACCAAGTCACCAATTTCCTTAGACTCAATAAGCACCAATCTGATCCTGTT ATCATCCTTAAGATTGATTTCTCTCCTAGCACCTCAATCAATGGGCTAAAATTTTCTGATTTTTCTTAAGTTTGATCAGA AACTGGTTTGATCTTATTGCTTTTCAGGTTATTGGTGCTGAATTGAAGACATGGGTTTGAGTTCTAAGCAGGTTTGTAGC AGTGGACTTGATTGGAATCAGACACTATTGGAAGCTCAAGACTTGGAGCTCCCAAAGCCAAAACAACAACAACAACAACA AAATCAGCAACCAGAGTCTTTGAAGTGCCCAAGATGTAACTCGTCAAACACCAAATTTTGCTACTACAACAACTACAACA AGTTACAGCCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTGCGCAATGTTCCTGTTGGT GGGGGAAGGAAGAACAAGAGAGTCAGAAAACCAACCACCACCACAACCACCACAGCCACCACCACCTCTACTAATTGCAC CACCCCTGTCACCCCCAACATGGCAATTCAAGCTCTGATTCGTCCACCATCTATGTTTCTACAACAGAATCTGTTGATGA ACATCAGAGACTCAGAAAGCAAGGATTTTGGTATTAGTAGTGGTAATGGCATGTTTCTGAGTTCAACTAATTTGCATCTT CCTCCTCAAAACCAGAGCTTTCTCTTCCCTTTTTCAAGCTCAAGCTCTTTTGACACAAACCCTTGTTCATCTTCCAATGT TAATTATAACTATGGGGAAGAGTTTAAGACAATTCATGATGAATCAACTATCAACAGTACTGTAATGCCTAGCACACAGC CATGGGAGATAGCAGCAAAAAGTGGTGGCATGGAAACTTCAACCTATTGGAACTGGGAGGACATTGATTCCTTGGTCTCA ACTGATCTGAAAGATCCATGGAATGATTCTGATATCAAACCCTGAGACCAGAAAACAGAAAAACAAGAGTAACATGTGGT AGTGTTCATAGATTTTAGCTATTTAATTTAATTGGGGGTGTTTTGTGTTTTACACTTACAGATTAGTATTTAGTAAATGT TCTTGTTTCAAGATGGAGCATATTTTGTGCTGGTCTTTCTGCAAAGAGCAGTATTTGGATTGGAGCTGTTATGTTTTAGT TTTGGTTTCAGCTTCAAGCAAGGGGTCCCAATTAGTTGTAACCCACTCAGTTTGCCTGTTTGACATTTCTCTATCATTTC ATCTAA
CDS sequence (LotjaGi4g1v0053100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTGAGTTCTAAGCAGGTTTGTAGCAGTGGACTTGATTGGAATCAGACACTATTGGAAGCTCAAGACTTGGAGCT CCCAAAGCCAAAACAACAACAACAACAACAAAATCAGCAACCAGAGTCTTTGAAGTGCCCAAGATGTAACTCGTCAAACA CCAAATTTTGCTACTACAACAACTACAACAAGTTACAGCCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAA GGTGGAACTCTGCGCAATGTTCCTGTTGGTGGGGGAAGGAAGAACAAGAGAGTCAGAAAACCAACCACCACCACAACCAC CACAGCCACCACCACCTCTACTAATTGCACCACCCCTGTCACCCCCAACATGGCAATTCAAGCTCTGATTCGTCCACCAT CTATGTTTCTACAACAGAATCTGTTGATGAACATCAGAGACTCAGAAAGCAAGGATTTTGGTATTAGTAGTGGTAATGGC ATGTTTCTGAGTTCAACTAATTTGCATCTTCCTCCTCAAAACCAGAGCTTTCTCTTCCCTTTTTCAAGCTCAAGCTCTTT TGACACAAACCCTTGTTCATCTTCCAATGTTAATTATAACTATGGGGAAGAGTTTAAGACAATTCATGATGAATCAACTA TCAACAGTACTGTAATGCCTAGCACACAGCCATGGGAGATAGCAGCAAAAAGTGGTGGCATGGAAACTTCAACCTATTGG AACTGGGAGGACATTGATTCCTTGGTCTCAACTGATCTGAAAGATCCATGGAATGATTCTGATATCAAACCCTGA
Protein sequence (LotjaGi4g1v0053100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLSSKQVCSSGLDWNQTLLEAQDLELPKPKQQQQQQNQQPESLKCPRCNSSNTKFCYYNNYNKLQPRHFCRACKRHWTK GGTLRNVPVGGGRKNKRVRKPTTTTTTTATTTSTNCTTPVTPNMAIQALIRPPSMFLQQNLLMNIRDSESKDFGISSGNG MFLSSTNLHLPPQNQSFLFPFSSSSSFDTNPCSSSNVNYNYGEEFKTIHDESTINSTVMPSTQPWEIAAKSGGMETSTYW NWEDIDSLVSTDLKDPWNDSDIKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 258 | 258 | 6.8E-85 | – | |
| PANTHER | 1 | 258 | 258 | 6.8E-85 | – | |
| Pfam | 43 | 96 | 54 | 1.1E-30 | ||
| ProSiteProfiles | 44 | 98 | 55 | 27.009 | ||
| ProSitePatterns | 46 | 82 | 37 | - | ||
| MobiDBLite | 85 | 118 | 34 | - | – | |
| MobiDBLite | 101 | 118 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0053100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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