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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0053300 |
| Transcript ID | LotjaGi4g1v0053300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase-associated protein RTF1 like; TAIR: AT1G61040.1 plus-3 domain-containing protein; Swiss-Prot: sp|Q9C950|VIP5_ARATH Protein RTF1 homolog; TrEMBL-Plants: tr|K7L2P2|K7L2P2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0053300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6451770..6453740) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGATTTGGAAAATTTGCTTTTGGAGGCTGCGGGAAGAACTGGCGCGGGCGGGAGAAATCGGCATTCTCTGCCGCC TTCAAGGAGACGGCGTGGTGGATCTTATTCGGATGGCGGGAGTGATTCGAGGGATGATGATTCGGATGATGAGCTCAATT ACGCGAGCAGGAAAAAAGGGTCTGGATCGCAGGTTCCTGTGAAGAAGAGACTGGATCCGACCAAAAGAGATGATGATTTG GGCAGTCAGGAGGAAGAAGGAGATGATGATGGTCGCAGCGATCATGAGGGTGATAGCAGTGATGAATCGAATATCGGCGA TGATCTTTATAAGGATGAGGATGATAGGCGGAAGCTTTCTGAGATGTCAGAACTTCAGAGAGAGATGATCCTTTCGGATA GGGCTGCTAAAAAGGATGATAAAAGTTTATTGGGGAAGATAGCATTGAAGAGGGATAAAGGAAAGGCAACAGTGCCTAGG AAACAGTCTCCACCACTGTCATCATCTCGGATGCGTGCTGCGGCCAGATCTGCTGATAGGTCAGCCAAGAATGAGGCATT AAATGAATTGCGTGCTAAGCGAATGAAGCAGCAAGATCCAGAAGCTCACCGCAGATTGAAAGAAGCAACTAGAAGTTCAG GGACCCGCCATTTTTCCCCACCAAAGCGCAAACCTTTCACATCAACAAGTCTCAGTAGCTCAAGCCATAGTGAGAGTGAA AGTAGGTCTCACAGTGATGATGACGGGTCAACTGGGGATGGAGGAATGGTAGATAGCGATGATGATAGAGCATTATCTGG GTCTGAGGGACTATCCTTTCAGGATATAAAGGAAATAACTATTCGCAGGTCCAAACTTGCCAAATGGTTTATGGAGCCTT TCTTTGAGGAGTTAATAGTTGGTTGCTTCGTAAGAGTTGGAATTGGTAGGTCAAAATCTGGACCTATCTACCGGCTCTGC ATGGTGAAAAATGTTGATGCCTCAGATCCTGATCGGCAGTATAAGTTAGAGAATAAAATTACATACAAGTATTTGAATGT TGTCTGGGGAAATGAAAGTTCTGCTGCTAGGTGGCAAATGGCTATGATTAGCGACTCTGCTCCACTTGAAGAGGAGTTCA AACAGTGGGTTAAGGAAGTAGAGCGAAGTGGTGGCCGTATGCCAAGCAAACAAGATGTGTTGGAAAAAAAACAAGCAATA CAAAAAGCCATCACATTTGTCTACTCAGCGGCTACTGTGAAGCAGATGTTACAAGAGAAAAAGTCCGCCTCGTCACGGCC ATTAAATGTTGCTGCTGAGAAGGATAGGCTGAGGAGGGAAATGGAAATAGCAATAAGTAAGAATGATGAGTCAGAAGTGG AGAGGATCAAAGCACGACTGATAGAGTTAGAGGCCTCCAGGCAAGAAAAGGTGAAGGATGCTAAGGCTTTGAAGCTGGCT GAGATGAACCGAAAGAACAGGTTTGAGAACTTCAAAAATGCTTCTGAAATGAAGCCAGTGAATACAGGTTTGAAAGCAGG GGAGGCAGGTTATGATCCCTTCTCAAGGAGATGGACTAGATCAATGAATTACTATGTTTCAAAACCTGGTGATAAGGCAG CAAGTGGGAATAATAGTACCAATGGCATAGTGGCTGACGCAGGCAGCAATGGAACAGGAGTACCGGCGGAGGCTGGCATG GTGGCTACTGTTGCAGCCTTGGAAGCCGCTGCTGATGCTGGAAAGTTAGTGGATACAAGTGCTCCAGTGGACCAAGGGAC AGAGTCGTATTCATTGCACAATTTTGAGCTGCCGATTTCCTTAGCATTACTTCAAAAGTTCGGCGGAGCCCAAGGAGCTC AGGCAGGATTTATGGCAAGAAAACAAAAAATAGAAGCAACAGTTGGATTTAAAGTCTTGGAGAATGATGGCAGGAGGCAT GCGCTGACGCTGACAGTTAGTGATTACAAAAGAAGAAGAGGGCTTCTCTGA
CDS sequence (LotjaGi4g1v0053300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGATTTGGAAAATTTGCTTTTGGAGGCTGCGGGAAGAACTGGCGCGGGCGGGAGAAATCGGCATTCTCTGCCGCC TTCAAGGAGACGGCGTGGTGGATCTTATTCGGATGGCGGGAGTGATTCGAGGGATGATGATTCGGATGATGAGCTCAATT ACGCGAGCAGGAAAAAAGGGTCTGGATCGCAGGTTCCTGTGAAGAAGAGACTGGATCCGACCAAAAGAGATGATGATTTG GGCAGTCAGGAGGAAGAAGGAGATGATGATGGTCGCAGCGATCATGAGGGTGATAGCAGTGATGAATCGAATATCGGCGA TGATCTTTATAAGGATGAGGATGATAGGCGGAAGCTTTCTGAGATGTCAGAACTTCAGAGAGAGATGATCCTTTCGGATA GGGCTGCTAAAAAGGATGATAAAAGTTTATTGGGGAAGATAGCATTGAAGAGGGATAAAGGAAAGGCAACAGTGCCTAGG AAACAGTCTCCACCACTGTCATCATCTCGGATGCGTGCTGCGGCCAGATCTGCTGATAGGTCAGCCAAGAATGAGGCATT AAATGAATTGCGTGCTAAGCGAATGAAGCAGCAAGATCCAGAAGCTCACCGCAGATTGAAAGAAGCAACTAGAAGTTCAG GGACCCGCCATTTTTCCCCACCAAAGCGCAAACCTTTCACATCAACAAGTCTCAGTAGCTCAAGCCATAGTGAGAGTGAA AGTAGGTCTCACAGTGATGATGACGGGTCAACTGGGGATGGAGGAATGGTAGATAGCGATGATGATAGAGCATTATCTGG GTCTGAGGGACTATCCTTTCAGGATATAAAGGAAATAACTATTCGCAGGTCCAAACTTGCCAAATGGTTTATGGAGCCTT TCTTTGAGGAGTTAATAGTTGGTTGCTTCGTAAGAGTTGGAATTGGTAGGTCAAAATCTGGACCTATCTACCGGCTCTGC ATGGTGAAAAATGTTGATGCCTCAGATCCTGATCGGCAGTATAAGTTAGAGAATAAAATTACATACAAGTATTTGAATGT TGTCTGGGGAAATGAAAGTTCTGCTGCTAGGTGGCAAATGGCTATGATTAGCGACTCTGCTCCACTTGAAGAGGAGTTCA AACAGTGGGTTAAGGAAGTAGAGCGAAGTGGTGGCCGTATGCCAAGCAAACAAGATGTGTTGGAAAAAAAACAAGCAATA CAAAAAGCCATCACATTTGTCTACTCAGCGGCTACTGTGAAGCAGATGTTACAAGAGAAAAAGTCCGCCTCGTCACGGCC ATTAAATGTTGCTGCTGAGAAGGATAGGCTGAGGAGGGAAATGGAAATAGCAATAAGTAAGAATGATGAGTCAGAAGTGG AGAGGATCAAAGCACGACTGATAGAGTTAGAGGCCTCCAGGCAAGAAAAGGTGAAGGATGCTAAGGCTTTGAAGCTGGCT GAGATGAACCGAAAGAACAGGTTTGAGAACTTCAAAAATGCTTCTGAAATGAAGCCAGTGAATACAGGTTTGAAAGCAGG GGAGGCAGGTTATGATCCCTTCTCAAGGAGATGGACTAGATCAATGAATTACTATGTTTCAAAACCTGGTGATAAGGCAG CAAGTGGGAATAATAGTACCAATGGCATAGTGGCTGACGCAGGCAGCAATGGAACAGGAGTACCGGCGGAGGCTGGCATG GTGGCTACTGTTGCAGCCTTGGAAGCCGCTGCTGATGCTGGAAAGTTAGTGGATACAAGTGCTCCAGTGGACCAAGGGAC AGAGTCGTATTCATTGCACAATTTTGAGCTGCCGATTTCCTTAGCATTACTTCAAAAGTTCGGCGGAGCCCAAGGAGCTC AGGCAGGATTTATGGCAAGAAAACAAAAAATAGAAGCAACAGTTGGATTTAAAGTCTTGGAGAATGATGGCAGGAGGCAT GCGCTGACGCTGACAGTTAGTGATTACAAAAGAAGAAGAGGGCTTCTCTGA
Protein sequence (LotjaGi4g1v0053300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADLENLLLEAAGRTGAGGRNRHSLPPSRRRRGGSYSDGGSDSRDDDSDDELNYASRKKGSGSQVPVKKRLDPTKRDDDL GSQEEEGDDDGRSDHEGDSSDESNIGDDLYKDEDDRRKLSEMSELQREMILSDRAAKKDDKSLLGKIALKRDKGKATVPR KQSPPLSSSRMRAAARSADRSAKNEALNELRAKRMKQQDPEAHRRLKEATRSSGTRHFSPPKRKPFTSTSLSSSSHSESE SRSHSDDDGSTGDGGMVDSDDDRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLC MVKNVDASDPDRQYKLENKITYKYLNVVWGNESSAARWQMAMISDSAPLEEEFKQWVKEVERSGGRMPSKQDVLEKKQAI QKAITFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMEIAISKNDESEVERIKARLIELEASRQEKVKDAKALKLA EMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSMNYYVSKPGDKAASGNNSTNGIVADAGSNGTGVPAEAGM VATVAALEAAADAGKLVDTSAPVDQGTESYSLHNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFKVLENDGRRH ALTLTVSDYKRRRGLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 118 | 118 | - | – | |
| PANTHER | 1 | 656 | 656 | 1.7E-242 | – | |
| PANTHER | 1 | 656 | 656 | 1.7E-242 | – | |
| MobiDBLite | 93 | 118 | 26 | - | – | |
| MobiDBLite | 130 | 158 | 29 | - | – | |
| MobiDBLite | 130 | 267 | 138 | - | – | |
| MobiDBLite | 176 | 212 | 37 | - | – | |
| MobiDBLite | 222 | 238 | 17 | - | – | |
| MobiDBLite | 239 | 265 | 27 | - | – | |
| SMART | 270 | 382 | 113 | 9.6E-42 | ||
| ProSiteProfiles | 270 | 405 | 136 | 38.338 | ||
| Gene3D | 271 | 403 | 133 | 2.8E-40 | ||
| SUPERFAMILY | 272 | 404 | 133 | 9.55E-35 | ||
| Pfam | 275 | 380 | 106 | 1.1E-30 | ||
| Coils | 434 | 473 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0053300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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