Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0053800 |
| Transcript ID | LotjaGi4g1v0053800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G56420.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420; TrEMBL-Plants: tr|K7LAQ1|K7LAQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0053800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6488720..6490547) extracted from Lotus japonicus Gifu genome v1.2.
CTAACACTACTACACAGTACGTACGTACTATCAGAGAAAGGATTTTGAACCCTAACTTTCTCCTTGGCTGAACATCGTAA CCCTCCTCCTCCCGCTGACACTGTTCATCTCGGCGACCTCCTCTCTCCACCGGCGACGGCTTGTACGACCCTCCTCTCTA CGCTGCTTAGGTATGTTATTCATATATATTTGCTTGTTCCTATCATATCATATCTGCCTCTTGTCTTTCTTTATAACGTG TACGTTTCAGGCTGGCTATTAGATAAGATGAAAGCCAAAAGAAATCCACACCTTGACAGCGCAGCCCGGCACGGCTGTGG TGCGGCGGCGATAATGGGAGGAGGGCTCTCTTCCATTTTTCTGAAGATGAAGAAGCAGTTTTGGTTGGCGGCGGCTACTA GGATTAGTGATTTGCCAGATGAACTTCTCTGTCACATTCTCTCATTTCTTCCAATTGAAGATGTTTTCGCCGCAAGTCTC GTGTCGAAGAGGTGGAGATCCCTCAGGTATTCACTCCCCAATCTCGACATTAGCGAGGATAGATTTCTTGGACGGTGGCG ATCGTCTTATTCCTTCATACAACTCGTAAACGCCGCCATTCTCGGCCGAGGAATTCACCAACCCATCAAAACGCTTTGTC TCATTCTCGTGTCCCCAATTTCCCAGACATGGTTAAAAGCTGCAAGAGACCTCAAAGTTCACAACCTCGAAATCTCTGTC CCCCTTGGAACCAACGTGCCCTGCACCGTTTTCACAATCACAACTCTTGTTGTTCTTAAGTTGTGTAATGCAACTGTTAC TGATGCATTTTCTTCTCTTGTTGTTCACCTTCCCTCACTCAAAGTTCTGGATTTGAACAGAATCCATTTTTTCAAGAGAC AACATTTTATCGAGCTTCTTAATGGGTGTGCTGCGTCTCTTGAAGATTTTCAGGCAAAGGATATATCTATTTATCATTAT CATCTTGACCCTTCATATAAGGGCAAAGTTACTACCAGTTTATCAAAGTGTGTCAGAGCAAATATTTCTCTCGCGAAGAT GACAAAATATTTTCCAGGATATTATTATTATTCTATTAATCTGATTCTGGGCTTAGACAAGGTATGTTGTATTTGGAAAA GGAGAATGAATGAATGATTTTAGTTTGTTATATGTTTTCTGATCACTTCTCTTTATAACTCTTGCAGTTAGACACTCCTC TATTTCCCAATTTAATTCACATGGAGCTCAAATTCGGAGGCCAAGTTGATTGGAAATTTGTGCTTGATATGCTCCATCAT TGCCCTCAACTGCAAACAGTTGTCCTTCAAAACCTATGTGACCTCTCTATAGAGGTTTGGCCAAGCACAAATGTTGTTCC TAAATGCTTTTCTTCACAGCTCAGGACATGCTGTCTTAAAAATTGTACAGGCTCAAAACGTCAGGTTACATTTGCCAAGT TTGTTATGCAAAATGCAACATTGTTATGTGCTTTGACAATTTTCAGTTGGCCTGGCATGCGTAATAAGAGAATTCTTCAA ATGAGAAAAGAATTGGACTCATGCCCAAGGAGCTCTGCAACCTGTGATCTTCAAATTATTCATGTTCCTAGATGACTGCA TTTGTTTTTTTCTTTCTTATATATAAAGAACTACATATAATGTATCTTGTGGTTTTGGTCTGTGAACTTTTATTTATGTA ATTTTTATTCTCGTTAGTAGCTATGAAAGTTATTTATTTCTAGATGACTGCATTTGTATTTAGTACTTCATATAATGTAT CTTTTGGTTTTGGTCCTTTTTGGAGGACATTAACTTTTTGCCTCTGTATGTTGTTGTACATCCTTGTG
CDS sequence (LotjaGi4g1v0053800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGCCAAAAGAAATCCACACCTTGACAGCGCAGCCCGGCACGGCTGTGGTGCGGCGGCGATAATGGGAGGAGGGCT CTCTTCCATTTTTCTGAAGATGAAGAAGCAGTTTTGGTTGGCGGCGGCTACTAGGATTAGTGATTTGCCAGATGAACTTC TCTGTCACATTCTCTCATTTCTTCCAATTGAAGATGTTTTCGCCGCAAGTCTCGTGTCGAAGAGGTGGAGATCCCTCAGG TATTCACTCCCCAATCTCGACATTAGCGAGGATAGATTTCTTGGACGGTGGCGATCGTCTTATTCCTTCATACAACTCGT AAACGCCGCCATTCTCGGCCGAGGAATTCACCAACCCATCAAAACGCTTTGTCTCATTCTCGTGTCCCCAATTTCCCAGA CATGGTTAAAAGCTGCAAGAGACCTCAAAGTTCACAACCTCGAAATCTCTGTCCCCCTTGGAACCAACGTGCCCTGCACC GTTTTCACAATCACAACTCTTGTTGTTCTTAAGTTGTGTAATGCAACTGTTACTGATGCATTTTCTTCTCTTGTTGTTCA CCTTCCCTCACTCAAAGTTCTGGATTTGAACAGAATCCATTTTTTCAAGAGACAACATTTTATCGAGCTTCTTAATGGGT GTGCTGCGTCTCTTGAAGATTTTCAGGCAAAGGATATATCTATTTATCATTATCATCTTGACCCTTCATATAAGGGCAAA GTTACTACCAGTTTATCAAAGTGTGTCAGAGCAAATATTTCTCTCGCGAAGATGACAAAATATTTTCCAGGATATTATTA TTATTCTATTAATCTGATTCTGGGCTTAGACAAGTTAGACACTCCTCTATTTCCCAATTTAATTCACATGGAGCTCAAAT TCGGAGGCCAAGTTGATTGGAAATTTGTGCTTGATATGCTCCATCATTGCCCTCAACTGCAAACAGTTGTCCTTCAAAAC CTATGTGACCTCTCTATAGAGGTTTGGCCAAGCACAAATGTTGTTCCTAAATGCTTTTCTTCACAGCTCAGGACATGCTG TCTTAAAAATTGTACAGGCTCAAAACGTCAGGTTACATTTGCCAAGTTTGTTATGCAAAATGCAACATTGTTATGTGCTT TGACAATTTTCAGTTGGCCTGGCATGCGTAATAAGAGAATTCTTCAAATGAGAAAAGAATTGGACTCATGCCCAAGGAGC TCTGCAACCTGTGATCTTCAAATTATTCATGTTCCTAGATGA
Protein sequence (LotjaGi4g1v0053800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKAKRNPHLDSAARHGCGAAAIMGGGLSSIFLKMKKQFWLAAATRISDLPDELLCHILSFLPIEDVFAASLVSKRWRSLR YSLPNLDISEDRFLGRWRSSYSFIQLVNAAILGRGIHQPIKTLCLILVSPISQTWLKAARDLKVHNLEISVPLGTNVPCT VFTITTLVVLKLCNATVTDAFSSLVVHLPSLKVLDLNRIHFFKRQHFIELLNGCAASLEDFQAKDISIYHYHLDPSYKGK VTTSLSKCVRANISLAKMTKYFPGYYYYSINLILGLDKLDTPLFPNLIHMELKFGGQVDWKFVLDMLHHCPQLQTVVLQN LCDLSIEVWPSTNVVPKCFSSQLRTCCLKNCTGSKRQVTFAKFVMQNATLLCALTIFSWPGMRNKRILQMRKELDSCPRS SATCDLQIIHVPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| Phobius | 33 | 52 | 20 | - | – | |
| ProSiteProfiles | 43 | 79 | 37 | 13.233 | ||
| PANTHER | 44 | 406 | 363 | 2.5E-62 | – | |
| SUPERFAMILY | 44 | 86 | 43 | 1.44E-13 | ||
| PANTHER | 44 | 406 | 363 | 2.5E-62 | – | |
| Pfam | 46 | 79 | 34 | 5.5E-12 | ||
| SMART | 49 | 89 | 41 | 8.7E-7 | ||
| Phobius | 53 | 72 | 20 | - | – | |
| Phobius | 73 | 362 | 290 | - | – | |
| SUPERFAMILY | 155 | 357 | 203 | 6.28E-6 | – | |
| Pfam | 335 | 376 | 42 | 1.0E-9 | ||
| SMART | 337 | 409 | 73 | 5.6E-4 | ||
| Phobius | 363 | 382 | 20 | - | – | |
| Phobius | 383 | 413 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0053800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…