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LotjaGi4g1v0058300.1

Overview

Field Value
Gene ID LotjaGi4g1v0058300
Transcript ID LotjaGi4g1v0058300.1
Lotus japonicus genome version Gifu v1.2
Description Squamosa promoter-binding-like protein; TAIR: AT2G33810.1 squamosa promoter binding protein-like 3; Swiss-Prot: sp|Q38741|SBP1_ANTMA Squamosa promoter-binding protein 1; TrEMBL-Plants: tr|A0A151RAJ5|A0A151RAJ5_CAJCA Squamosa promoter-binding-like protein; Found in the gene: LotjaGi4g1v0058300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:7016635..7020722) extracted from Lotus japonicus Gifu genome v1.2.

ATAAATGGTGGAATATGTATTACTTTAATTTACAAGCAAAGGGTTTATACCACTAGAAAGATAAGAAGATAAGAGTAATA AGTGTTATATATGATGTCATGTAGTTGGAAGAAAAAAAGTGTCGAGAGGTGTCGGCGCTATTTAAGATTTATGAATCATT GTTGTAGATGGTGAGAACAATACCCTTTGTGGTCCTTATTATCCCTATCCTATTTACCCTTCATGTTTTCATTTTCCTAT ATATATTATTGAGGTTTTCTGGTCTTTGTTCTCCTTATGACTTCTCTAAGTTTTCTCCATATTAATCTTCCTCTGGATCT GTCTTGCTTTGCTTGCATTCATGGATAGGTATGAGGGAAAGAGAACCTTGAGGTACAAAGAGTACGATGAGGAGGAAGAG GAAGAAGAAGAAGATGAAGAAGAAGAGGGTAGAAGAAAGAGAGTAGTTACAGATCTATATAGCAAGAGAGGGTCTAAAGG TGGAAGCTCAGTGCCACCTTCTTGTCAGGTGGAAAATTGTGATGCTGATCTAAGTGAGGCTAAGCAGTACCACCGGCGGC ATAAGGTTTGTGAGTACCATGCCAAAGCTCATGCCGTACACATTGCAGGGATGCATCAACGGTTTTGCCAGCAATGTAGC AGGTTGAGAAACCCTAACCTATTTTAAGTAAAAAACTATTTTGTTTAAGTCTAATTATAGATTTGCACTTTTGTTGATGG TTAAACTTTGCTGTGAATTGCTGAGTGCAGAGGGAAGAGGTTTGGTTAGTATTAAGTAGTATATACAGTAGCCCTATGTT GAGGAAAGGAGAAACTTAAATCTTCAATTTGAATGGCACATAACTAGGGTGTGGTTGGTTGGAATGAAAATGAAACTTCC TTTGTTCTTTTTTGGTTTCTTAATTACTTTGGGTTTTCACTCCTACCAATTTAGAAAGATCTATCCACCCCCAAAATGGA AAGTCTTTACTCTTTAGCATAGAGAATTCTTCTTTTTTTAAATTTCTGTTCTCTTTTTTTTGAAATTAATTTTATCCCTC AACAGCACCCATATTACGTTTTGTACATTTTAGTATAAACCATAGATGGATTGTACCCAAAACCAAACCTATACACTCAG TGTTTGGATTCCCAGCCCTCAAAATAACTTTTCTGATTTCTCCCACAAAAATTACTCACAGTAGTTTTCTTCTAGAGTAA GTACTTCTCCCTATAACTTAGAAAATTGAATTTATAAATACAGTACTTATTATTTTCAACTTTTGAAAAGTATTAGTTGT AGTTGACCAATTCCTTGAAATTTTCCCCTCGACTTCTCAAAATTGGTACTCTTTTCCTTTACTAGGTTTTCCCAAGGGGG TTTTATCCTAGTAAGGTTTTAATGAGGCCTGTTTTGGAAGGTCTGTTTTCAATGAGGTATTAGGTTGGGTAGTTTCGCCA TTGTTAGGGTCTTTGATATTTTCTTTTTTCCTCTTCTTTCTTTTTGTATTGGGTTGAAGTACCCCTTGTACTTCCATTCA ATATATTCATAATTGCCTATCAAAAAAAAATTGCACTATAAGAGAGGGACTGATATCTAACATCGACATCCTAACCGATA GATTTATTGTGAACGAAATTAATTCAAATGATTTCTCTAGATCAACAAAAACTTGGTTCACATTGATACGCTTAATTGGT AAAATATAATTAATGTTCTTTTAACATTGTAAAAGTCATAAATAAATAAAAACAATAAATATTAAAATAGTGATAGATAT ATAGGAACAGAGTGAGTAATAGTAAAAGATAATTCAAAGATAAATCAATTTTTAACATTATCCACCATATAGTTGCCCTA ATTATAAGATTTTGTCCACCGTTGACCAAGAAAAACTGGGTTAATATCACATATTAAAATGAGATATCTACAAATTAATA TTCGCACAAAAAAACTTTGTTGCAAATAACATATACTGAATGTTAGTTGTGAAAACATGATTCATTATTGAAACAGTTTT AAACCTGATCCACATAAAACTGTCCTAATTACAAATAAAATCTTATATCCTTCAATAAAATTTTCTAAAATTTTTTCTTT TGTTTTTATAAGTAATACATAAACTAAAAAAGGAAATATTTAAAATTCTTAAAATATTGAATTTAATGCTTTCTTTCTCT AATGATTAAGAGAATTATTTTGAGAATAAAATGGGCTTTAAAATTATTCATTACCAATCACCTATCAAATTTCTACTTTT TCAACATCTATACTTGGAGTCACCATTTTGACCCATTAGGATCTTATTCGTGTTGGGGTTGCTTTCCATTGAAAGCAATT GAAGCCTCTTCATTTTTTTTTAAATTTCCACATAGGAAAGCTCCATCCTACTTCTTATAACAAATTAAAGTCCTTATATT ACTTACTCAAAAGGCACACACTTAGTTGACACTTGACAAGAGACGACTGGTTTATTGGTTGTTAATGAGGCCCCATCTAA TATCTAATAATATTAGTTGTTAATGACAATATTGGTACTTGATTTAGGACATTAGTATCCATTTATCAACACACAAGACA CGTCCTTTTTTTTTTAACAAAACATGAAACACATCCTTTCTTTGTATATATATTTGATTTTATAGGATCTACCTATTTAA TATTTAAAAGATAGATTTTTTAAGCAAAATATATTCATTGATTTGAAGTACAATATTAAGAAAGATTGTAAAGTCACAAC CTATAACTGAGATTGTTGGACAAAACCATCAACCACGAAAGTTGAAAGTTGAAACGCCCCAAGGACCAAATAATTCCGAA AAAACCAAAAAATCCAACAAAGCCAAAAATGATCGAAACCACAAACTTAATTCCAACAAAAAGCCTTCAATGCAAACAAA CAGCTCCAGGAGGAACCAAGTACTCATGTAAGATTTTAACATTAAATTTATACATAGAAGATCTACTCAAACAAAAATGT ATTGTGCTCCATTGGAGCAAAGTTCAAATGAGTAGATAATTTTCCATATCAACTAACTTACTCTTCAAAATCTTGTTTTT TAGATTCCATGAGCTATCAGAATTTGATGACTCTAAAAGGAGTTGTAGGAGGCGTCTGGCTGGGCATAATGAGAGGCGTC GCAAAAATGCAATTGACTATCATGGACAATGATTTCATCAATGAGATGGGCATTGAGGCAAGCATATAAATGAATTAATA AAGTCACCCATTGAAACCTTTTAAATAGTGTTGCTGGTCTCTATGCATGGATGCTCTCTATCTTCTGTCAAATCATTTTT CCTGTATGATGAAAAGATTGGTGCTGCTATTAATAACATCCATGAGAGGTTATTTTCACTTAGATTCATTACAATCATGC TTGAACAATGACTTTAGAAAGTATTTGTTTGTTTTTCTTTTTCCTGTGTTCAATTTGTTAGCATTACTTTCTCTGGGGGG CAGAAATCTTTATGAGGGATTTTTTCCAATTGGTACTGCTAACAAAATCTTATTAATATGAAATATTCTGTCAAAATAAT CAAAGGGGGAAATTAAACTAGGCACTGCCACCACATGATTAGTTATACTAATATAAGACTGAAATAGATATCATTTTTTC TGCATTTAATTATAGTTTGTTCAACTATTACTACTTGGATATATAATGAGGACTTGCTTATCACATCATTTAAAGCAACA AGTTTGTTATAGTAATTACTAGCATATATAGGAATTAATCATCTTTCCTATTAAAAAACACTGCCTATTAGTCTTAAATC TGAGCCCATAGACCACATTTTTATGTTAAGTTTTTCAAGTTCGGCTATCAATTATATTTATTAGTTACTTGGACAAAGGA ATGAAGCGTCAAAGAAGATTGGAAAAGGTATAAATATAGCAGAACATTAGTGTCATAGTGTGCATTAGTCGTTTTGAAAA GCAGATGCCTCTTAATTTTGGTATTTGATCTAAAAGAAAGTATTTCAATTGGTAAGATATATATAATATATATATATATA TATGCAGTACTATTTGTTTCCATGTTAAATAAGTAGAGGACAGATCTTGCTGCTAAACTTAAAATTAAAGATACATGCAT ACATCCCC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0058300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATAGGTATGAGGGAAAGAGAACCTTGAGGTACAAAGAGTACGATGAGGAGGAAGAGGAAGAAGAAGAAGATGAAGA AGAAGAGGGTAGAAGAAAGAGAGTAGTTACAGATCTATATAGCAAGAGAGGGTCTAAAGGTGGAAGCTCAGTGCCACCTT CTTGTCAGGTGGAAAATTGTGATGCTGATCTAAGTGAGGCTAAGCAGTACCACCGGCGGCATAAGGTTTGTGAGTACCAT GCCAAAGCTCATGCCGTACACATTGCAGGGATGCATCAACGGTTTTGCCAGCAATGTAGCAGATTCCATGAGCTATCAGA ATTTGATGACTCTAAAAGGAGTTGTAGGAGGCGTCTGGCTGGGCATAATGAGAGGCGTCGCAAAAATGCAATTGACTATC ATGGACAATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0058300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDRYEGKRTLRYKEYDEEEEEEEEDEEEEGRRKRVVTDLYSKRGSKGGSSVPPSCQVENCDADLSEAKQYHRRHKVCEYH AKAHAVHIAGMHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNAIDYHGQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 56 56 - –
MobiDBLite
mobidb-lite
1 15 15 - –
PIRSF
PIRSF037575
1 136 136 1.4E-57
IPR017238
Coils
Coil
12 32 21 - –
PANTHER
PTHR31251:SF112
19 130 112 2.8E-55 –
PANTHER
PTHR31251
19 130 112 2.8E-55 –
Gene3D
G3DSA:4.10.1100.10
44 116 73 1.2E-35
IPR036893
ProSiteProfiles
PS51141
52 129 78 32.479
IPR004333
SUPERFAMILY
SSF103612
53 133 81 2.88E-39
IPR036893
Pfam
PF03110
55 128 74 3.6E-33
IPR004333

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0009908
Biological process Flower development The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0058300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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