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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0058400 |
| Transcript ID | LotjaGi4g1v0058400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem I reaction center subunit psaK; TAIR: AT1G30380.1 photosystem I subunit K; Swiss-Prot: sp|Q9SUI5|PSAK_ARATH Photosystem I reaction center subunit psaK, chloroplastic; TrEMBL-Plants: tr|I3SM84|I3SM84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0058400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:7027648..7031652) extracted from Lotus japonicus Gifu genome v1.2.
GAATTAAAAGGCACAAGGGTGCCACCCATTGTAACAGAAAACAGATACAAGACACGAGGCCAGAAAGGAAAGAAAGAAAA GATCAAAAGCACAATACAGGGGAGGGAAAGAAGAAGACCAGAAACCAGAAAACAGAGCACAAAGCAAAGATAGATAGATA TATATATTTTTCCTCGACAGTTGTCTTGCCTTTGCTCAATGTAGGTGCTCATATTTTGCTGTTTAACAGAGAAAGTATCT TTGTATATAGATATCTCATTTCAAAATTATAGGAATGGAATTGATCAATCCTTACATTTGACTATGTGAAATCTGTGGTG GCAAAACATGAGAGTAGGGTCATTATCAAATTTAGTAACATTGAACTGTAAGGTAAAGGGAGTGTTGGCAAGGAGGTTAC TAAACCAATAATGTAGAAAGGAACCTCGCATTTGTGTATGAGAAGTTTTTAATTTGGGAGGTTCTGGTGTGGCAAACCTC TTGATTCTGCAATTTAGTAGCATGTCAGATGAAAATATTTAGTATTTGCATTTATATATGGAATGTTTTTAATCTTTCAT TTTATCCATTATAGGAGATTATCGATATGTGTGATTATGTTGTTGGGCTAAGGAACCTTGGTGAGATAGTTTGGACTCAA CTACTTATGTGGTGATAATCAATACAAAATATCCTGAATTTTTAGGGAGTTCTAGGACAATGGTTTCAATTGTAAGTTAC AGACTAATTGAACTCATGAGTCATGCCTATTGGGTTACTTATATGTTGGAATAGATAAAAGCCAATGGGGATCGCGTCAC CGTCAAGAGGCTCGAGAAAAACAAGGTATTGCTATTCAGGATTTTCTTCCCTTTTCCCATGTTTTTTTCTTTTAAGATTT AGGGGTTGAATTCTATATGTTGCGGATAAATGGCATCCTGAAATCTGTTCTTCATTAAACAGAAAATGATGTATTTTGCA CATGATTTCTTTTAATATTTAATATGATCCTTCTATAAGTTTTGATAATTTTATATAAACTATGTGATCCCTCTATAAAT TTTCATGATGGATGTTGTATGAAATCATTCATTTGGAAACTGGAAGTCACTAAAAGTTGTCATATTATTATTATTATATA TATCCTTGCTGCATATATTAGCCTTTAATTAGAGAGAGTCCTGGAAGGTTAGTTCTATTTTTTCAGGTTAGTCCTGTATA TTGATCTATGATTGGCTCCAAAAGGTACGTGAAATAGAAACTCAATCACACAATAACTGAAGTGATGTTGAAATGGGATT CCAAACAAAAATTCTTACCACTTCATAGTATACTTTTATTGTATTGATATTTAACCATTGCAGCTTCTATTTTGATTGCT AAATTTAACTACTTAAATGGGAGTTACTGTTAGAAATAAAGTCATTTTTAAATAGAAAATGAAGGTTTCCAAGTTACAAA GATGAACGGTCATGAGTCTCATGAGTTATTATGCATTAAGGACCATTAAGTGTGTTTAAGGGTCATCATTATTTTTTATG TAACCAGTAAGGATTAGCTTTGTCTATTTAGTATTTTAAATTGAGGTATTAGTGTCCAGCTTATGAATTACTCTTTTAAT ATGGAGTATCTTCTCACCTGCATGAGCTAGGAGTGGATTTTAACTTCATAGTGATTTAAGCTCATGTTACAACTTTTAGT TTCATTAGTTTTATGTGTGTTGGCTGTTCTCTTCAAAGGACAAAATCAGAATTCTAAGGCGCTAGATTATATTGAATTGA CAAATGTTGTTATCTTTGGAATAGGTCACTTCAACCATTGCAGCATCAAACATGTAAAGTAGCTTTGGCAAAGCAAGATT CATTTATTCTTATGCCTACTGGGGGTGGTAGATGTCTTTGCTATCCGGTCATTTTTTTTTTCCTTAAGCCCCATTCTTAT ATTTTTGTTGATATTTTTTTTGGTCATATTCTTCTAACAACTTAATATCATTGATTGTTATATTCTTTTGAAGTAAATAC TTTCTAAAAAGTGCTATAGATCTGGAAATTCAAAATCAAATGATTGTAATGTGTATCACAAATGTCCCTCCTTTTACCAT TGCTGGAATGACAATTCCAAGCTGTTCTGTGTACCCAAACTACATTAATTGGTGCAATGTTGTTATCTGTCATCTTATAG TTATAACTTATATGCTTTTGAACATGTTTATTTCAATTCGTGTTTACAGCTTCCAGCAACTCTTCTACCTGGAGTTACAG TAGTTGTATATCCTTACTTTCACTCATTCAGGATCAAATAATAACACTTAACCTGAAGTTTGGAATGCCTGCTACTTTTT AAATTATCATAAACTGCTTCCCAGTTTCCAAATTTTGTCTTTTACTTTATTCCCAAGTGTCGATTCAAGGTTAGTTTTCA AAAGTGGGTTATTGTGATAGAGATTTTGAGGGCAAACAAAAAGATGCTACACGTGTCCATAACAGAAATACAAATATTGG AAAGATAATGAAAGAAGAAATCCAAACAAGGATAAATGGTTTACATCTGAAGAGAATTTTGTTGCTTATAAGGATTGTGG TTTTATATAATGGGGCGATGATATTTAATGAGATTATTATATTAGCATATTCTATGGATTGTTGTTATGGTTTAAACAGT TTGTGTGTTTGGCTTAGAGTGATAGTCAAGGATCTCATGTGAATTTTGCCATCAGAATGAAAATATTTGCAAGCTCTTAA ATCTGAATTCACGGTGCTGATTTGAGAATTCAGTTTTGTTTTAAGAAACCTTTTTCTTCTATCAGTTTTCCAGTTGTGTT TTTATGCTAAAATGATTGTGAGTATAGTTTAAGGTGACCCCTAATGTAGACCACTTTTAAAGTGGTCTAATTTTAGACCA CTTTTTTTAACCTGCTATAACAGATCAACACATCTTTTTTTAAAGAAATTTAATATATGACAAATTTTTAATGATATTTT TTCTTTAAAAAAATAATTTGTTGACCTGCTATACCCGGTCAAAGTAGGTGGTGTAAAATTACACCACCTAAAAATGGTGC ATATTAGGTTTTCCCATAGTTTAATATAGTTTATGGGATTTGTTTGTTTGGATACATGATGCTAGATAATTTAAGAAGGG GTTTAGAATGCTGTTATTATGGAGACCTGTGATGTTACATTTATGTGCTTGATTTGGGCTCTGAATATTTTCCCCCTTTT TTGCACCCTTCACTGTTGCCACATCGTTGAACTTAAAAAGTCTGGTCCTAAAGCATTTTTATTTTTATTCTTTTTAGTTG TATACCACTATGATGACTACTCTCCCTCAACTCAGTGGTCTTAGACCAAAATTCTTAGCAGCACCTGTGCAGAATTTGGT AAGCACCCCTCTCATACTTACATGAATTTGCATTTTAAGATAGTATCCCACATCTATAACTTCTAGCTGAAATATGTAAT TATGAACTGGGTTTGCTTATTTTTCTTCTGCAGGTTGATGTCCAACCCATGAAACGTAAGGGGGAAATGATGCTTTGGGA GCTCGGTGTGACTTTATTGGCTCACCCACTAATCTGGTGGCATCTCATGATTTTAAAGGCACCCCCATATTTTGATAGGA GTATTTTTGTTAGATTATGGTGGTGGCTTCTACACAACCCTGATGTTGTGTGCTGGAAGGTTTGGATTGGTTCCCTCACA AATAGGAAAACCACTGCAGGGCTAAAGCTGGAGGTGAGGGACCCGGGTTTGCAGGCGGGTGACCAAGCTGGGTTCACACT TGCTGATACCTTGGCCTGTGGAACTGTTTGCCACATCAATGAGCATGACAGAGATTGAATTGATATCCACCTAAAGATCG GGAAAGTTTTTTTTAGCATTGATATTAACATATACAATGTGAAGTGCACATATTGAATGAACATCGTCACTAATTTATAT GGTTATAGGAAAAATGATTAGTGGTAAGGTTTTTCTTCTGAGTGATGTGATATTTAATATTATATGCATCACCTTTAACT TTCAG
CDS sequence (LotjaGi4g1v0058400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGACTACTCTCCCTCAACTCAGTGGTCTTAGACCAAAATTCTTAGCAGCACCTGTGCAGAATTTGGTTGATGTCCA ACCCATGAAACGTAAGGGGGAAATGATGCTTTGGGAGCTCGGTGTGACTTTATTGGCTCACCCACTAATCTGGTGGCATC TCATGATTTTAAAGGCACCCCCATATTTTGATAGGAGTATTTTTGTTAGATTATGGTGGTGGCTTCTACACAACCCTGAT GTTGTGTGCTGGAAGGTTTGGATTGGTTCCCTCACAAATAGGAAAACCACTGCAGGGCTAAAGCTGGAGGTGAGGGACCC GGGTTTGCAGGCGGGTGACCAAGCTGGGTTCACACTTGCTGATACCTTGGCCTGTGGAACTGTTTGCCACATCAATGAGC ATGACAGAGATTGA
Protein sequence (LotjaGi4g1v0058400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMTTLPQLSGLRPKFLAAPVQNLVDVQPMKRKGEMMLWELGVTLLAHPLIWWHLMILKAPPYFDRSIFVRLWWWLLHNPD VVCWKVWIGSLTNRKTTAGLKLEVRDPGLQAGDQAGFTLADTLACGTVCHINEHDRD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | - | – | |
| Phobius | 35 | 57 | 23 | - | – | |
| Phobius | 58 | 137 | 80 | - | – | |
| Gene3D | 87 | 133 | 47 | 8.4E-12 | ||
| PANTHER | 92 | 131 | 40 | 2.1E-21 | – | |
| PANTHER | 92 | 131 | 40 | 2.1E-21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Photosystem I | A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. |
Expression pattern of LotjaGi4g1v0058400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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