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LotjaGi4g1v0060000.2

Overview

Field Value
Gene ID LotjaGi4g1v0060000
Transcript ID LotjaGi4g1v0060000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Heat shock protein; TAIR: AT1G07400.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|P05478|HSP16_SOYBN 18.5 kDa class I heat shock protein; TrEMBL-Plants: tr|I3T182|I3T182_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0060000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:7199787..7200269) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCGCTCATTCCAAGTTTCTTTGGTAACCGAAGGAGTAATGTTTTTGATCCTTTCTCACTCGAAGTCTGGGACCCCTT CAAGGATTTCCCATTCGGCAATTCTGTTTCTGCTTCTTTCCCTCAACTTTCTCGGGAAAATTCTGCGTTTGTGAGCACCC GAGTGGATTGGAAGGAGACCCCAGAAGCACATGTGTTCAGGGCTGATCTTCCAGGGTTGAAGAAGGAGGAAGTGAAGGTA GAGATTGAAGATGACAGAGTTCTTCAGATTAGCGGAGAGAGGAATGTTGAGAAGGAAGACAAGAATGATACATGGCATCG CGTGGAGCGTAGCAGTGGGAAATTCCAGAGGAGGTTCAGATTGCCTGAGAATGCTAAAATGGATCAAGTTAAGGCTTCCA TGGAGAATGGGGTTCTCACTGTTACTGTCCCCAAGGAAGAGATCAAGAAGCCTGAAGTTAAGTCCATTGAAATCTCTGGT TGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0060000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGCTCATTCCAAGTTTCTTTGGTAACCGAAGGAGTAATGTTTTTGATCCTTTCTCACTCGAAGTCTGGGACCCCTT CAAGGATTTCCCATTCGGCAATTCTGTTTCTGCTTCTTTCCCTCAACTTTCTCGGGAAAATTCTGCGTTTGTGAGCACCC GAGTGGATTGGAAGGAGACCCCAGAAGCACATGTGTTCAGGGCTGATCTTCCAGGGTTGAAGAAGGAGGAAGTGAAGGTA GAGATTGAAGATGACAGAGTTCTTCAGATTAGCGGAGAGAGGAATGTTGAGAAGGAAGACAAGAATGATACATGGCATCG CGTGGAGCGTAGCAGTGGGAAATTCCAGAGGAGGTTCAGATTGCCTGAGAATGCTAAAATGGATCAAGTTAAGGCTTCCA TGGAGAATGGGGTTCTCACTGTTACTGTCCCCAAGGAAGAGATCAAGAAGCCTGAAGTTAAGTCCATTGAAATCTCTGGT TGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0060000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSLIPSFFGNRRSNVFDPFSLEVWDPFKDFPFGNSVSASFPQLSRENSAFVSTRVDWKETPEAHVFRADLPGLKKEEVKV EIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFQRRFRLPENAKMDQVKASMENGVLTVTVPKEEIKKPEVKSIEISG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11527:SF286
1 160 160 1.1E-90 –
PANTHER
PTHR11527
1 160 160 1.1E-90
IPR031107
Gene3D
G3DSA:2.60.40.790
9 159 151 4.6E-50
IPR008978
SUPERFAMILY
SSF49764
34 160 127 7.48E-46
IPR008978
ProSiteProfiles
PS01031
46 160 115 32.538
IPR002068
CDD
cd06472
54 145 92 2.37797E-57 –
Pfam
PF00011
56 159 104 2.5E-32
IPR002068

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0060000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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