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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0062500 |
| Transcript ID | LotjaGi4g1v0062500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase, putative; TAIR: AT1G55850.1 cellulose synthase like E1; Swiss-Prot: sp|Q651X7|CSLE1_ORYSJ Cellulose synthase-like protein E1; TrEMBL-Plants: tr|A0A072UMH1|A0A072UMH1_MEDTR Cellulose synthase-like protein D3; Found in the gene: LotjaGi4g1v0062500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:7711801..7716173) extracted from Lotus japonicus Gifu genome v1.2.
TGATTATAGCTTCCAAATTGAGCTATTTACTTCCGGATTATGGCTACCGGAAATCTTTCCTTTGCAATTTGGATTCATGC AGCAGTCTCGATGCCATTTTGTAAATACTCATAAGAGACGTATCAAATTTGACATGAACAAGAATATTGAATTAACACCA ACAATTTTTTATGATAATGTCAGCATGAGACAAAGAGTTATCATCAACAGAGAATTTTTTGACATTTGTTTTTATAAACT GAGTAAAGTCCAGAGAGACGCACCAATTACATGTTTATCATCCAGGAGGAAGAAAAATGGAGACTAGTCAAGGGACCCAT CCTCTCAATATCTGCCATGTCCAAAACCTGTTGGTTATCATCAACAGGCTACACATGCTCCTCCATTCCACTGCTTTATG CTTCTTGTTCTATTACAGGCTTTGCTTTCTTTTCCAAGACACAGAAACCAGAGGAAGCCACTTGCTACCATGGCTTCTTG TTTTTGCTTCAGAAATTGTTCTTTCCTTCATTTGGATCCTTGGCCAAGCGTTTCGTTGGCGTCCCGTTTCGCGGTCTGTC TTCCCAGAAAGATTGCCAGAGGATGATAAGCTTCCTGATATTGATGTGTTCATATGCACTGCTGATCCAATTAAGGAACC CACTTTGGAGGTGATGAACACTGTTTTGTCAGCCATGGCACTGGATTATCCTCAAGAGAAGGTTCATGTGTATCTTTCAG ATGATGGGGGTTCCCCCATGACTCTTCATGGTGTGAGGAAGGCTTGGGAATTTGCAAGGTGGTGGCTTCCATTCTGCAAG AGGTACAGAATCAAGAACAGGTGCCCCAAGGTTTACTTTTCTGATTTTGAGGATGATGGTAGTGATTTTGCCAGGAGTAG TGTGTATTTGGCAGATAAGCAAAAGATGAAGGTGTACTATTGATGACACTTGGTTTCATTGAAATTTCTGTGTGTTTCTG AAATTAGAGCGGCATGGATTTATGATGATGAAAGTCAACAATTTGCAGGAAAAGTATGAGGCTTTTAAAGAGGAGATACA GACATTCAGAAAAGATGGGGCTTTCTCCAGAGATAGTTCTGGTATAACTGATGGAGATCACTCATCCTGCATCGAGGTAT AGTAGCATTTTCATTATTCACTATTACATGTTTAGTTGGCATTAGTATGAGGCTTTTAAAGAGGAGATACAGACATTCAG AAAAGATGGGGCTTTCTCCAGAGATAGTTCTGGTATAACTGATGGAGATCACTCATCCTGCATCGAGGTATAGTAGCATT TTCATTATTCACTATTACATGTTTAGTTGGCATTAGTCTGTTTGACTTTAATTTTGGATTATACCACTGAACTAAGCCAA ATCCATGATTGAGGCTCCCTGTAGAAGAACTTATTTGAGGTGCTTCTGCAAGTGTTAGGGAAACTTATACCTAGAAATTG TTTTGAGTTTACTTTCCTAAGCTGCTTATACCTACTATAACCTATTTTGAGCTTAATTATTTCAATAAACTTTTCAAATT AGCTTTAAAATAAGCATTAGGTTATTTACCCAAATGAACCCTGAAATCATTTTCACCCCTTACTTTTCTCTCTCCAATGA AAACATAATATCTCAGCTAAAAACCTTTTTCTTTTCTCCTTAGAATTACATTCTATCTCTTAGTTGTTAAATTTTCAACT ATCTTTTGATTTAAGAATCAGAGAAGGGGTCAAAAAAAAGGTGACCTTAGTCTCTAAACCAGGGTTATGCAGCAATCAGC ATAGTCATGTGGATTTTCAGCTTAGGTGGTGATTCGCCGCCATGAGCAAATATAAATTTAACACAATTTGTTTCATTATC CTGGCATTGGCAGGTGATGCAAGAAAACAATATTGATGTAGATAATGTCAAATTGCCTCTCCTTGTCTATGTTTCTCGAG AGAAGAAGCCTTCTCATCCCCACCATTTCAAGGCTGGATCCCTCAATGTTCTGGTATGACTATACCCTTTTTCTTATCTT CCAATGTATAAACACAGAAAATGTCATGCTTCCATTCCATGTCTTGCTTTATGATCTTTCAGCTTCGCGTATCTGCTTTG ATGAGCGATTCTCCCTACATCCTAGTTCTAGATTGTGACATGTTCTGCAATGATCCAACTTCAGCTCGAAGTGCTATGTG TTTCCACCTTGATCCAAAGATATCTTCTTCCTTAGCTTTGGTTCAATTTCCTCAGAAATTTCACAACATCAGTAAGAATG ACATCTATGATAGTCAGCTGAGATCACTATTTACAGTGAGTACACCCAAACTTACCTTTATAATACCTTCTTTTTATGTT CCCCTATTAATCATGGGGCAATATTTGCTTTGTTTAACTAATTTTTTTTGAACAAATTCAGCTACAATGGCAAGGAATGG ATGGGCTTAAGGGACCAGTGATGTCAGGTACAGGGTTTTATATAAAAAGGGTATCACTGTATGGAAATTGCGCACACAGA GGTATTCAAAGAACACAAAATTTTCACTTCATTAACATATGAGCATTTGCCTTATAAGGTTACCATACTCTTTACTGTTC TGAGTTTTGGATGTTAGGAGAGACTGATCTGCTTCAACTTAAAGAATATTTTGGTTCATCCCATGAATTTATCAAATCAT TTACTCAAAACTACACTAGTGATTTGGCGTCTGGTCGGAATGCATTTATTCAAGAACTTCACTTGTTGGCTTCTTGCAAG TATGAAACTGGCACCAAATGGGGACAAGAGGTAAGTGGACTTTATCTTTCAATAACTCAATTACTGCACACGGAGACAAA ATGTATATGTGTATTCTTTGAACTATTGCAGGTTGGTTTCTCATATGATAGTGTAGTGGAAGACTTCCTTACAGGATTTT TCTTGCATTGTAATGGATGGACTTCAGTTTTCTGTGAACCATCTAGACCACAGTTCCTAGGTACAGCTACAACAAATTTG AATGATGTGCTAATCCAAGGCACAAGATGGTACTGTGGTTTGTTTGAAAATGGTATAAATAGGTTTTGCCCCCTTATATA TGGCTCTCAAAGGATGCCACTTCTTCAGAGCCTATGTTATGCTGAACTCACATATTTCCCTCTTTATTGCTTGCCTCTTT GGTGTTTTGCTACCATCCCTCAGCTCTGTCTGCTAAATGGAGTGCCCTTGTACCCTAAGGTATCAACTATCAACAACAAT GAGATCAGCTATTTCCCTTCATTCTCAGATTCTTATATATATATATAAAAAAAAGAGAAAAGGCAGCCCAGTACAATAAA GCTCCTGCTATGTGCGGGGTCTGGGGATGGGTCCGACCGCATGGTCTATTATGTGCAGTCTTACCTTGTTTTTTAGCATA AGAGGCTGCTTCTTGGCAGAAACTTTACAGTTGCACTCATATTCTTATATTTATATATATTTGCTTGATATACTAAAACC CTCTTTTCTTTTCACATTTCTTTCAACAGGTTTCAGACCCATTTTTCATGATATATTTGTTCATTTTTCTATCATCTCTT TTAAAACACTTACAAGAAGTCTTCTTAACTGGGGGAACTCTCCAGAAGTGGTTAAATGAGCAGAGGATCTGGATGATGAA ATCAGTTACATGCCATCTATATGGATGTTTGGATGCTATACTAAAGAAAGTTGGTGTGAGAGAAGCTAGTTTCTTGCCTA CAAATAAAGTAGAGGATGATGAACAAACTCTACTATACCAAATGGATAAATATGATTTCCGAGCATCAAATATCTTCATG GTTCCAATGCTTGCCATTCTCACTGTCAACATAATTTGCTTTGTTGGAGGAGTTTACAGAGTGGTTTTGGTGGGTGATTG GGACAAAATGTTCATTCAGATTTTCCTTGCAGTTTTTATCATCACTATCAACTACCCTATTATTGAAGGGGTAGTGATAA GGCAGGACAAGGGACGAATTTCACAGGTGGTGGCTATGCGTGTTATCTTGGCTACGATGATTCTTTTGACGTTTTGTAAT CTATTAAGAAGTGCATAATATTCTCTACTACCAATTTACTGTATATTATGAGTATCATCCAACTCTCACATCGTGTCAAG AAAAAAGTAGAGAAAATGTATACTCATCCAAATCCCACAACACATCAGAGTAGTCTGAAGAAGAAAAAAAGGTGGAGAGT TGTTATAAATATGGAGAGTTAGTTGAGTTTTATTCACCACAACAACGCCATTATTTGGGTATCTTGGGCTCAGTAGTTGT GTGGCTTTGTGAAAGTTTGCAATTCTGACCTTGTGAGGATTTCCAATTCTTTTCCTAAATTGCATTAAGTAATAAAATAT TTTGTTGAGATGTGAATTAGGTAAGGTGTATCGAACCATGTTAAATTTGTGAG
CDS sequence (LotjaGi4g1v0062500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGACTAGTCAAGGGACCCATCCTCTCAATATCTGCCATGTCCAAAACCTGTTGGTTATCATCAACAGGCTACACAT GCTCCTCCATTCCACTGCTTTATGCTTCTTGTTCTATTACAGGCTTTGCTTTCTTTTCCAAGACACAGAAACCAGAGGAA GCCACTTGCTACCATGGCTTCTTGTTTTTGCTTCAGAAATTGTTCTTTCCTTCATTTGGATCCTTGGCCAAGCGTTTCGT TGGCGTCCCGTTTCGCGGTCTGTCTTCCCAGAAAGATTGCCAGAGGATGATAAGCTTCCTGATATTGATGTGTTCATATG CACTGCTGATCCAATTAAGGAACCCACTTTGGAGGTGATGAACACTGTTTTGTCAGCCATGGCACTGGATTATCCTCAAG AGAAGGTTCATGTGTATCTTTCAGATGATGGGGGTTCCCCCATGACTCTTCATGGTGTGAGGAAGGCTTGGGAATTTGCA AGGTGGTGGCTTCCATTCTGCAAGAGGTACAGAATCAAGAACAGGTGCCCCAAGGTTTACTTTTCTGATTTTGAGGATGA TGGTAGTGATTTTGCCAGGAGTAGTGTGTATTTGGCAGATAAGCAAAAGATGAAGGAAAAGTATGAGGCTTTTAAAGAGG AGATACAGACATTCAGAAAAGATGGGGCTTTCTCCAGAGATAGTTCTGGTATAACTGATGGAGATCACTCATCCTGCATC GAGGTATAG
Protein sequence (LotjaGi4g1v0062500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
METSQGTHPLNICHVQNLLVIINRLHMLLHSTALCFLFYYRLCFLFQDTETRGSHLLPWLLVFASEIVLSFIWILGQAFR WRPVSRSVFPERLPEDDKLPDIDVFICTADPIKEPTLEVMNTVLSAMALDYPQEKVHVYLSDDGGSPMTLHGVRKAWEFA RWWLPFCKRYRIKNRCPKVYFSDFEDDGSDFARSSVYLADKQKMKEKYEAFKEEIQTFRKDGAFSRDSSGITDGDHSSCI EV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 9 | 242 | 234 | 4.3E-111 | – | |
| PANTHER | 9 | 242 | 234 | 4.3E-111 | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 25 | 44 | 20 | - | – | |
| Phobius | 45 | 55 | 11 | - | – | |
| Phobius | 56 | 76 | 21 | - | – | |
| TMHMM | 57 | 79 | 23 | - | – | |
| Phobius | 77 | 242 | 166 | - | – | |
| Gene3D | 90 | 179 | 90 | 2.6E-7 | ||
| Pfam | 102 | 219 | 118 | 3.6E-32 | ||
| Coils | 201 | 221 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi4g1v0062500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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