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LotjaGi4g1v0062500.3

Overview

Field Value
Gene ID LotjaGi4g1v0062500
Transcript ID LotjaGi4g1v0062500.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Cellulose synthase, putative; TAIR: AT4G24010.1 cellulose synthase like G1; Swiss-Prot: sp|Q570S7|CSLG1_ARATH Cellulose synthase-like protein G1; TrEMBL-Plants: tr|A0A072UPM1|A0A072UPM1_MEDTR Cellulose synthase-like protein D3; Found in the gene: LotjaGi4g1v0062500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:7712005..7714983) extracted from Lotus japonicus Gifu genome v1.2.

CAACAGAGAATTTTTTGACATTTGTTTTTATAAACTGAGTAAAGTCCAGAGAGACGCACCAATTACATGTTTATCATCCA GGAGGAAGAAAAATGGAGACTAGTCAAGGGACCCATCCTCTCAATATCTGCCATGTCCAAAACCTGTTGGTTATCATCAA CAGGCTACACATGCTCCTCCATTCCACTGCTTTATGCTTCTTGTTCTATTACAGGCTTTGCTTTCTTTTCCAAGACACAG AAACCAGAGGAAGCCACTTGCTACCATGGCTTCTTGTTTTTGCTTCAGAAATTGTTCTTTCCTTCATTTGGATCCTTGGC CAAGCGTTTCGTTGGCGTCCCGTTTCGCGGTCTGTCTTCCCAGAAAGATTGCCAGAGGATGATAAGCTTCCTGATATTGA TGTGTTCATATGCACTGCTGATCCAATTAAGGAACCCACTTTGGAGGTGATGAACACTGTTTTGTCAGCCATGGCACTGG ATTATCCTCAAGAGAAGGTTCATGTGTATCTTTCAGATGATGGGGGTTCCCCCATGACTCTTCATGGTGTGAGGAAGGCT TGGGAATTTGCAAGGTGGTGGCTTCCATTCTGCAAGAGGTACAGAATCAAGAACAGGTGCCCCAAGGTTTACTTTTCTGA TTTTGAGGATGATGGTAGTGATTTTGCCAGGAGTAGTGTGTATTTGGCAGATAAGCAAAAGATGAAGGTGTACTATTGAT GACACTTGGTTTCATTGAAATTTCTGTGTGTTTCTGAAATTAGAGCGGCATGGATTTATGATGATGAAAGTCAACAATTT GCAGGAAAAGTATGAGGCTTTTAAAGAGGAGATACAGACATTCAGAAAAGATGGGGCTTTCTCCAGAGATAGTTCTGGTA TAACTGATGGAGATCACTCATCCTGCATCGAGGTATAGTAGCATTTTCATTATTCACTATTACATGTTTAGTTGGCATTA GTATGAGGCTTTTAAAGAGGAGATACAGACATTCAGAAAAGATGGGGCTTTCTCCAGAGATAGTTCTGGTATAACTGATG GAGATCACTCATCCTGCATCGAGGTATAGTAGCATTTTCATTATTCACTATTACATGTTTAGTTGGCATTAGTCTGTTTG ACTTTAATTTTGGATTATACCACTGAACTAAGCCAAATCCATGATTGAGGCTCCCTGTAGAAGAACTTATTTGAGGTGCT TCTGCAAGTGTTAGGGAAACTTATACCTAGAAATTGTTTTGAGTTTACTTTCCTAAGCTGCTTATACCTACTATAACCTA TTTTGAGCTTAATTATTTCAATAAACTTTTCAAATTAGCTTTAAAATAAGCATTAGGTTATTTACCCAAATGAACCCTGA AATCATTTTCACCCCTTACTTTTCTCTCTCCAATGAAAACATAATATCTCAGCTAAAAACCTTTTTCTTTTCTCCTTAGA ATTACATTCTATCTCTTAGTTGTTAAATTTTCAACTATCTTTTGATTTAAGAATCAGAGAAGGGGTCAAAAAAAAGGTGA CCTTAGTCTCTAAACCAGGGTTATGCAGCAATCAGCATAGTCATGTGGATTTTCAGCTTAGGTGGTGATTCGCCGCCATG AGCAAATATAAATTTAACACAATTTGTTTCATTATCCTGGCATTGGCAGGTGATGCAAGAAAACAATATTGATGTAGATA ATGTCAAATTGCCTCTCCTTGTCTATGTTTCTCGAGAGAAGAAGCCTTCTCATCCCCACCATTTCAAGGCTGGATCCCTC AATGTTCTGGTATGACTATACCCTTTTTCTTATCTTCCAATGTATAAACACAGAAAATGTCATGCTTCCATTCCATGTCT TGCTTTATGATCTTTCAGCTTCGCGTATCTGCTTTGATGAGCGATTCTCCCTACATCCTAGTTCTAGATTGTGACATGTT CTGCAATGATCCAACTTCAGCTCGAAGTGCTATGTGTTTCCACCTTGATCCAAAGATATCTTCTTCCTTAGCTTTGGTTC AATTTCCTCAGAAATTTCACAACATCAGTAAGAATGACATCTATGATAGTCAGCTGAGATCACTATTTACAGTGAGTACA CCCAAACTTACCTTTATAATACCTTCTTTTTATGTTCCCCTATTAATCATGGGGCAATATTTGCTTTGTTTAACTAATTT TTTTTGAACAAATTCAGCTACAATGGCAAGGAATGGATGGGCTTAAGGGACCAGTGATGTCAGGTACAGGGTTTTATATA AAAAGGGTATCACTGTATGGAAATTGCGCACACAGAGGTATTCAAAGAACACAAAATTTTCACTTCATTAACATATGAGC ATTTGCCTTATAAGGTTACCATACTCTTTACTGTTCTGAGTTTTGGATGTTAGGAGAGACTGATCTGCTTCAACTTAAAG AATATTTTGGTTCATCCCATGAATTTATCAAATCATTTACTCAAAACTACACTAGTGATTTGGCGTCTGGTCGGAATGCA TTTATTCAAGAACTTCACTTGTTGGCTTCTTGCAAGTATGAAACTGGCACCAAATGGGGACAAGAGGTAAGTGGACTTTA TCTTTCAATAACTCAATTACTGCACACGGAGACAAAATGTATATGTGTATTCTTTGAACTATTGCAGGTTGGTTTCTCAT ATGATAGTGTAGTGGAAGACTTCCTTACAGGATTTTTCTTGCATTGTAATGGATGGACTTCAGTTTTCTGTGAACCATCT AGACCACAGTTCCTAGGTACAGCTACAACAAATTTGAATGATGTGCTAATCCAAGGCACAAGATGGTACTGTGGTTTGTT TGAAAATGGTATAAATAGGTTTTGCCCCCTTATATATGGCTCTCAAAGGATGCCACTTCTTCAGAGCCTATGTTATGCTG AACTCACATATTTCCCTCTTTATTGCTTGCCTCTTTGGTGTTTTGCTACCATCCCTCAGCTCTGTCTGCTAAATGGAGTG CCCTTGTACCCTAAGGTAT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0062500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGACTAGTCAAGGGACCCATCCTCTCAATATCTGCCATGTCCAAAACCTGTTGGTTATCATCAACAGGCTACACAT GCTCCTCCATTCCACTGCTTTATGCTTCTTGTTCTATTACAGGCTTTGCTTTCTTTTCCAAGACACAGAAACCAGAGGAA GCCACTTGCTACCATGGCTTCTTGTTTTTGCTTCAGAAATTGTTCTTTCCTTCATTTGGATCCTTGGCCAAGCGTTTCGT TGGCGTCCCGTTTCGCGGTCTGTCTTCCCAGAAAGATTGCCAGAGGATGATAAGCTTCCTGATATTGATGTGTTCATATG CACTGCTGATCCAATTAAGGAACCCACTTTGGAGGTGATGAACACTGTTTTGTCAGCCATGGCACTGGATTATCCTCAAG AGAAGGTTCATGTGTATCTTTCAGATGATGGGGGTTCCCCCATGACTCTTCATGGTGTGAGGAAGGCTTGGGAATTTGCA AGGTGGTGGCTTCCATTCTGCAAGAGGTACAGAATCAAGAACAGGTGCCCCAAGGTTTACTTTTCTGATTTTGAGGATGA TGGTAGTGATTTTGCCAGGAGTAGTGTGTATTTGGCAGATAAGCAAAAGATGAAGGAAAAGTATGAGGCTTTTAAAGAGG AGATACAGACATTCAGAAAAGATGGGGCTTTCTCCAGAGATAGTTCTGGTATAACTGATGGAGATCACTCATCCTGCATC GAGACATTCAGAAAAGATGGGGCTTTCTCCAGAGATAGTTCTGGTATAACTGATGGAGATCACTCATCCTGCATCGAGGT GATGCAAGAAAACAATATTGATGTAGATAATGTCAAATTGCCTCTCCTTGTCTATGTTTCTCGAGAGAAGAAGCCTTCTC ATCCCCACCATTTCAAGGCTGGATCCCTCAATGTTCTGCTTCGCGTATCTGCTTTGATGAGCGATTCTCCCTACATCCTA GTTCTAGATTGTGACATGTTCTGCAATGATCCAACTTCAGCTCGAAGTGCTATGTGTTTCCACCTTGATCCAAAGATATC TTCTTCCTTAGCTTTGGTTCAATTTCCTCAGAAATTTCACAACATCAGTAAGAATGACATCTATGATAGTCAGCTGAGAT CACTATTTACACTACAATGGCAAGGAATGGATGGGCTTAAGGGACCAGTGATGTCAGGTACAGGGTTTTATATAAAAAGG GTATCACTGTATGGAAATTGCGCACACAGAGGTATTCAAAGAACACAAAATTTTCACTTCATTAACATATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0062500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

METSQGTHPLNICHVQNLLVIINRLHMLLHSTALCFLFYYRLCFLFQDTETRGSHLLPWLLVFASEIVLSFIWILGQAFR WRPVSRSVFPERLPEDDKLPDIDVFICTADPIKEPTLEVMNTVLSAMALDYPQEKVHVYLSDDGGSPMTLHGVRKAWEFA RWWLPFCKRYRIKNRCPKVYFSDFEDDGSDFARSSVYLADKQKMKEKYEAFKEEIQTFRKDGAFSRDSSGITDGDHSSCI ETFRKDGAFSRDSSGITDGDHSSCIEVMQENNIDVDNVKLPLLVYVSREKKPSHPHHFKAGSLNVLLRVSALMSDSPYIL VLDCDMFCNDPTSARSAMCFHLDPKISSSLALVQFPQKFHNISKNDIYDSQLRSLFTLQWQGMDGLKGPVMSGTGFYIKR VSLYGNCAHRGIQRTQNFHFINI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 24 24 - –
PANTHER
PTHR13301
9 416 408 8.3E-197 –
PANTHER
PTHR13301:SF177
9 416 408 8.3E-197 –
TMHMM
TMhelix
20 42 23 - –
Phobius
TRANSMEMBRANE
25 44 20 - –
Phobius
CYTOPLASMIC_DOMAIN
45 55 11 - –
TMHMM
TMhelix
55 77 23 - –
Phobius
TRANSMEMBRANE
56 76 21 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
77 423 347 - –
Gene3D
G3DSA:3.90.550.10
90 179 90 7.1E-7
IPR029044
Pfam
PF03552
102 410 309 2.2E-80
IPR005150
SUPERFAMILY
SSF53448
102 400 299 2.74E-6
IPR029044
Coils
Coil
201 221 21 - –
Gene3D
G3DSA:3.90.550.10
252 406 155 4.2E-11
IPR029044

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0016760
Molecular function Cellulose synthase (UDP-forming) activity Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1).
Subterm of
GO:0030244
Biological process Cellulose biosynthetic process The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0062500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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