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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0063400 |
| Transcript ID | LotjaGi4g1v0063400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LINE-1 reverse transcriptase like; TAIR: AT3G24255.3 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151QYZ6|A0A151QYZ6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0063400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:7921901..7925300) extracted from Lotus japonicus Gifu genome v1.2.
TAACATCAGGTAGCTCAAACATGGCCCTTGACAGTGTCACTATCTCATGGGGACACATTATTACATTAGCTGATTCAGAC TTTGCACTAAGAGTCTTGATGTACTGAACCAACACAAATTAGGCTCCCAGATGTATATCCATTCAAGTATTTTAAGTTTT GAGCCCACTGAAGTAAAAAACAATCATGTTCTGCTAACACCCGGAAACTGGGTATGCAAATAAAACCAACCCAATCATTA TCTACATCTTGAACTCTTGATTCACTTAAGAGAAAAAAAAAACCTGAGACAATAATTTGCTGCTCACAGCCAACTGTTCC CAGTAATTCCCACATAAGCTGAACAGTTGCTAGACAAGCTCCGTTATCCTGTTCCCTGCTGCTGTGGCAATCACTTCTTA TGATATGGCATTGACTTGGGAAAGTGGCTTTAATGAAGTTGTGGATCGCACCACAGGTCCAGTGCGATCATACCCAGATC CCTGCAATGAAAAACATGAGAAATGTGTGACAAATACCTAAAATTATCTAAAAATCAATAGTCACTCCTAAACCCACTAA AATGTGTAAACTAAGACTTAAGTACACTGAAACACCTAAATTTCCCTAAAACACTCATGAAAATAATCTAAAAGACCCAA GAAAATGACTTTATAGTCCCAGGTCGACCACCCATATACTAAGACAATAGCTTGTCCTCAAGCGAAAAACTCAGGAAAGC TTGTCCCCAAGCAAGGGATTTACACAGATCTTGACTACCATTCCAAGGTAAGTGTTTCACTCATGATCAACCATTGAATC ACAACAACTCAAACTTGGCATTCGCCTCAACTAATACAAGTGCATGGCTAATCAAGGATCACTAAGGCCTTCCTAGGGTT AGTAATGTGGCTTGGCTTCAAAAGGAAATTGATTTTTCTGGATATGCAAAGCACTTTCAAGCAGGAGGGCATATGAAAAT ATTTCCCAACACCTCATAACTTTTGGCTCTCTTTGACCAAATTATCGTTTTGTCACCATTTTCTTATAGTGTGTATTACA TCTCTACCTTTTTCACTTTTTCTCACTTCCTCAAGCTTTCAACTTTTCTTTTATAGAATAGATACAATGCATACTAAGCT TGAGATAGTGAGTTTTAAACAAAGCACCAATAGCCATTGCCCCCCAAATTACACCGTTGTACACAATCCACTCATATATG CTCTCTTAACTTAGAAAGTGTGGAAGAGAAATTGTTTTTCTTTTGGCTTGGGATCACATACGAGAAACAATATAGGTTTT CAGATTTTAGGCTCAAAATGGGTACAAGAGATTTCCTATACAAGGTAGGCTATATGGTCAAATAGTTATATACACTAAAT GAACAAAATATCTTGATCCTTTCCTATCATTTCCATGCAACCCATATAACAAGAGGCTCAAACAAGTCTAAATGCGTAAC ACAAACGGTAACCCAATCATGCTTTCATTGTATAAGGCACACACCCTCACCCGGTTGAAGTTAAAGGGTCCCTCCTCTGA TATCAAAACATGTCAATGCTATGCATATGGATTTCATGTGGACTTGGTGAGTCATGCTTTCTATGAGTACAAACTACAAA CACACTTTCAATCTGGAATCACCCACTTCAACAAGTTTTCACAATAATGCATCAGATGTTGAGAGGAGTGTCACTTAGCA AGAAGCATGTATCCCAAGGCCCAAGGGGTAAGAGTAAGACTTAAAACGAACAAGACTTGGTGTGTGAGAGTGTACAGTGA AAATCAATAATCAGTTCAAGCCTTTGGTGTAGAGTTTTGAATGCCAAATATTCAGGTTCTGTTAAAAGTAGTGACTCTCG TTGGTGGAGGGACCTGAATTCAGTCTGCTTTGGTTCTGGGCAAGGTAGCTGGTTTAGTGAGGCTTCGTGCCGCAGGGTTG GAGATGGCAGTGAGGTGCGGTTCTGGCTTGATGATTGGACGGGGGGTGGAATTCTTAAGGACAAGTTCCCAAGGCTTTTT AATCTATCTTCTCAACAGTACGCTACTGTCAGTGAAATGGGGGAACTGCATGCTAACTCATGGGAGTGGAATTTCAGTTG GAACAGAAACCTATTAGACAGGGAGCAAGCCAGACTAGTTGAACTAAGAAGGTGTTTTGCTGGTTTTTCTCCAAAGCCTG GGGAACCAGATAGGTGGTTTTGGGTTAAAGAGAGCTCAGGAGCTTTTTCAGTGTCTTCTGCCTATGAATTCTTGGCTGGT TTTTCTGCAGGGTCTCATGAAGGATTATTTGATTACCTTTGGGCCTCTAAGGCTCCGTCAAACTCAATTGCCTTAGCTTG GAAAGTGTTGATTAAAAAGCTGCAGACTAAAGATGAACTGAGGAAAAGGAATGCGATTCCAAGCGGAACTGATACGTCCT GTGCAGTGTGTCCTAATGCTGTGGAATCAATTTCTCACCTATTTTTTTGCTGTCCGATGAGCTGGTTACTTTGGTGCGGT GTGCTGCGCTGGGTTGGTTATTTGGCAGCGTTGCCTTGTGATGGAAAATCACATCTGTTGCAGTTTCTAAGCATTTGTCA GGGAAATAAATCATGGAAGAGGGTACTTTCTCTAATTTGGATAGCTACAATTGGGGTTATTTGGTATTCTCGCAATTGTA GAATTTTTAAAGGGGAGGTGGTTGATTGGAATAGGCTTCTTGACTTGATACAGTACAGGGTTTGGCTATGGTTAAAAGCA AAGTATTGCAGCTTTAGTTACTCCTTGTTCGAATGGATTTCAAATCCGGCTTCTTGTGTTGATGCTCTATAGAATGGCCA ATTTCTGTTGAAAGAGTTGTTGTGTACTGTGTTTTGTACTAACGAATTGTAATATTTTGTGTGTGCGTTTTCCTAGTAAT TTTCAGGTCTTTACAGTTGTGGGATGAAGCAATGGCTTTAGTGGAGAAATTTTGGAGGGCTAATTCCTAACTCTACGTGC TACAGTGATGAAACTTACAAGATTTTTACCTCTGCAGTGTTGGGTCCTATTAATGCTTGGCTGGTTGAGTGGATTTAAGG TTACATGTGGGTTGCTACAAGTGTTGATGATTTTCTTTTCTCCCTTGTCATGGTGGTTTCGAAGGATTCTTGTTCTGTGC TGTTCCTGATGCATGGTAGTTATATTGGTATAGAGGCTCCTTCTTTGGCTTCTTTGGTGATAGTATGACTCTGGGCGTTA GTGATCTGCTTTTCTTTTTTTGGGTGGGTTTTGTATTTCCCCTGGGAGGTGACACTGTGGCTTCCTATAATGTGTACTCT TTTTCCTTCTCCAGGTTTTTTCCAAGGGGGTTTTCCTGGAAAGGTTTTAACGAGGCATATTCTAGTAAGCTGTGCTTCCT TGGGGAGGGGGTTCTCTTAAGGTTCTGGTTGTAGTTCCTT
CDS sequence (LotjaGi4g1v0063400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAACTGCATGCTAACTCATGGGAGTGGAATTTCAGTTGGAACAGAAACCTATTAGACAGGGAGCAAGCCAGACT AGTTGAACTAAGAAGGTGTTTTGCTGGTTTTTCTCCAAAGCCTGGGGAACCAGATAGGTGGTTTTGGGTTAAAGAGAGCT CAGGAGCTTTTTCAGTGTCTTCTGCCTATGAATTCTTGGCTGGTTTTTCTGCAGGGTCTCATGAAGGATTATTTGATTAC CTTTGGGCCTCTAAGGCTCCGTCAAACTCAATTGCCTTAGCTTGGAAAGTGTTGATTAAAAAGCTGCAGACTAAAGATGA ACTGAGGAAAAGGAATGCGATTCCAAGCGGAACTGATACGTCCTGTGCAGTGTGTCCTAATGCTGTGGAATCAATTTCTC ACCTATTTTTTTGCTGTCCGATGAGCTGGTTACTTTGGTGCGGTGTGCTGCGCTGGGTTGGTTATTTGGCAGCGTTGCCT TGTGATGGAAAATCACATCTGTTGCAGTTTCTAAGCATTTGTCAGGGAAATAAATCATGGAAGAGGGTACTTTCTCTAAT TTGGATAGCTACAATTGGGGTTATTTGGTATTCTCGCAATTGTAGAATTTTTAAAGGGGAGGTGGTTGATTGGAATAGGC TTCTTGACTTGATACAGTACAGGGTTTGGCTATGGTTAAAAGCAAAGTATTGCAGCTTTAGTTACTCCTTGTTCGAATGG ATTTCAAATCCGGCTTCTTGTGTTGATGCTCTATAG
Protein sequence (LotjaGi4g1v0063400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGELHANSWEWNFSWNRNLLDREQARLVELRRCFAGFSPKPGEPDRWFWVKESSGAFSVSSAYEFLAGFSAGSHEGLFDY LWASKAPSNSIALAWKVLIKKLQTKDELRKRNAIPSGTDTSCAVCPNAVESISHLFFCCPMSWLLWCGVLRWVGYLAALP CDGKSHLLQFLSICQGNKSWKRVLSLIWIATIGVIWYSRNCRIFKGEVVDWNRLLDLIQYRVWLWLKAKYCSFSYSLFEW ISNPASCVDAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 142 | 142 | - | – | |
| PANTHER | 8 | 245 | 238 | 3.9E-27 | – | |
| PANTHER | 8 | 245 | 238 | 3.9E-27 | – | |
| Pfam | 57 | 146 | 90 | 1.3E-16 | ||
| Phobius | 143 | 161 | 19 | - | – | |
| Phobius | 162 | 181 | 20 | - | – | |
| Phobius | 182 | 198 | 17 | - | – | |
| Phobius | 199 | 251 | 53 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0063400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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