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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0063600 |
| Transcript ID | LotjaGi4g1v0063600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Amino acid transporter, putative; TAIR: AT5G16740.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1; TrEMBL-Plants: tr|I1K3P2|I1K3P2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0063600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:7954656..7956414) extracted from Lotus japonicus Gifu genome v1.2.
GCATTTGGAGCAAAAGGAAGAGTCCTAGCTGCAACTTTCATCTACATGGACATATTCATGTCCCTTGTTTCATTCACCAT CTCATTGCATGACAACTTGATCACAGTGTTGCATCTGAAGCTACATTTGGCAAAATTATCTGCACCACAACTTCTGACTA TGGGCGCAGTTCTGATTGCTCTGCCTAGTTTGTGGCTCAGAGATTTGTCTTCCATATCTTTCCTCTCAACTCTTGGTGTT CTCATGACTCTTGTCATTTTTATGTCTGTAGCAGCCACTGCAATTGTTGGAGATGTCAGAGTTAATCATGAAATACCCTT CTTCCAGCTCCACAACATTCCATCAATTTCAGGGATTTACGTCTTCAGTTATGGAGGACACATTGTTTTCCCCAATTTGT ACAAGGCCATGAAAGACCCCTCAAAGTTTACCAAGGTATATATTCATCATAGACAATATATATCATATTTTAATCAGCTT TCTTTTTACAATAAAATATTTGAAACCCTGAAATTACTCACAACCCAAAATTGATTTTGCTAGGTTTGTGCGTGTTTGGA TCAACGTTATTCACAATTAATTTTGGAAATATTGAATATAATAAAAGTATGTTGAAAGTGAAGTGATCTATATTTAGATA TATTTACAAATACATGATTTTGTCAGGTTATATTATGAAATTCAATTGTAATACATTCTTCAAAATTCACTATTGTCAAT GTTTACCTCCGGAATTAATTTTACTCCACCAGAACTGATTCTGTTACCTATTGAGAAACCAAACACACTTATATTAGAGC CATCGTGGAAGGATTTTCAAACATGATAATAATGCATGTTTGCAAATCCTACTACAACTAATTTGAGGAGAAACATATAT ATTATATTAGGTAGCTTTAAATTTCTGAAATTAACTCGGGTAAAGAAAAGATGACGATAAGAGAAAAACTGAATTGTCAA AGAATAGAAATCATACAATGAATGAGCTAATTAAAATTTCAAATTATATTATTAATTAAAAGATTAATGGGCCGGGGTGC TTTTATTATTTATTTAACTGATTTTTTATTGGGAATTTCAGGTTTCTATTGTGAGCTTCACAATAGTTACAGCACTCTAT ACAATAATGGGGTTCATGGGTGCAAAAATGTTTGGACCTAGTGTCAAATCTCAAGTAACTCTCAGCATGCCCCCAAATCA AATTGTGACAAAAATTGCATTGTGGGCAACCGTGCTGACACCTATGACCAAATATGCTCTTGCATTTTCACCATTCGCTA TTCAGCTGGAGCATATGCTTCCTAATTCCATGAGTGGCAGGACCAAAATGATAATTAGGGGCCTCATTGGTTCCTCTTTT CTTTTGGTTATACTAGCTCTTGCTCTCACAGTACCTTATTTTGAGCATGCTCTCAGCCTCACTGGTTCCCTTGTTAGTGT TGCTATCTCTCTTATTTTCCCATGTGCTTTCTACATGAAGATTTTCTGGGGTCACATATCAAAGCCTCTCTTGGTCCTCA ACATGTCTATCATCACTTTTGGGTTTCTTCTTGGAGTGGTTGGTACCATTTCCTCCTCAAAATCACTAGTGAAATTTTTT CTAGCTCGTTAGGGCGCCTGGAATGATTCAGCATTCTTGTGATCACCTTCCTCTTTTCAGGTCTATTAGTAAAAAACTAC ATGTTCAATATTCATGTATAAATAAATAGTGGTTATATTACCCCATTTTGTCCTATTAAATCGATAACTTTTAGCCCTT
CDS sequence (LotjaGi4g1v0063600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACATATTCATGTCCCTTGTTTCATTCACCATCTCATTGCATGACAACTTGATCACAGTGTTGCATCTGAAGCTACA TTTGGCAAAATTATCTGCACCACAACTTCTGACTATGGGCGCAGTTCTGATTGCTCTGCCTAGTTTGTGGCTCAGAGATT TGTCTTCCATATCTTTCCTCTCAACTCTTGGTGTTCTCATGACTCTTGTCATTTTTATGTCTGTAGCAGCCACTGCAATT GTTGGAGATGTCAGAGTTAATCATGAAATACCCTTCTTCCAGCTCCACAACATTCCATCAATTTCAGGGATTTACGTCTT CAGTTATGGAGGACACATTGTTTTCCCCAATTTGTACAAGGCCATGAAAGACCCCTCAAAGTTTACCAAGGTTTCTATTG TGAGCTTCACAATAGTTACAGCACTCTATACAATAATGGGGTTCATGGGTGCAAAAATGTTTGGACCTAGTGTCAAATCT CAAGTAACTCTCAGCATGCCCCCAAATCAAATTGTGACAAAAATTGCATTGTGGGCAACCGTGCTGACACCTATGACCAA ATATGCTCTTGCATTTTCACCATTCGCTATTCAGCTGGAGCATATGCTTCCTAATTCCATGAGTGGCAGGACCAAAATGA TAATTAGGGGCCTCATTGGTTCCTCTTTTCTTTTGGTTATACTAGCTCTTGCTCTCACAGTACCTTATTTTGAGCATGCT CTCAGCCTCACTGGTTCCCTTGTTAGTGTTGCTATCTCTCTTATTTTCCCATGTGCTTTCTACATGAAGATTTTCTGGGG TCACATATCAAAGCCTCTCTTGGTCCTCAACATGTCTATCATCACTTTTGGGTTTCTTCTTGGAGTGGTTGGTACCATTT CCTCCTCAAAATCACTAGTGAAATTTTTTCTAGCTCGTTAG
Protein sequence (LotjaGi4g1v0063600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIFMSLVSFTISLHDNLITVLHLKLHLAKLSAPQLLTMGAVLIALPSLWLRDLSSISFLSTLGVLMTLVIFMSVAATAI VGDVRVNHEIPFFQLHNIPSISGIYVFSYGGHIVFPNLYKAMKDPSKFTKVSIVSFTIVTALYTIMGFMGAKMFGPSVKS QVTLSMPPNQIVTKIALWATVLTPMTKYALAFSPFAIQLEHMLPNSMSGRTKMIIRGLIGSSFLLVILALALTVPYFEHA LSLTGSLVSVAISLIFPCAFYMKIFWGHISKPLLVLNMSIITFGFLLGVVGTISSSKSLVKFFLAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| PANTHER | 1 | 296 | 296 | 2.4E-138 | – | |
| PANTHER | 1 | 296 | 296 | 2.4E-138 | – | |
| Pfam | 3 | 293 | 291 | 7.1E-40 | ||
| Phobius | 32 | 51 | 20 | - | – | |
| TMHMM | 33 | 52 | 20 | - | – | |
| Phobius | 52 | 62 | 11 | - | – | |
| TMHMM | 59 | 81 | 23 | - | – | |
| Phobius | 63 | 81 | 19 | - | – | |
| Phobius | 82 | 100 | 19 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 101 | 119 | 19 | - | – | |
| Phobius | 120 | 130 | 11 | - | – | |
| Phobius | 131 | 155 | 25 | - | – | |
| TMHMM | 131 | 150 | 20 | - | – | |
| Phobius | 156 | 174 | 19 | - | – | |
| Phobius | 175 | 197 | 23 | - | – | |
| TMHMM | 175 | 197 | 23 | - | – | |
| Phobius | 198 | 217 | 20 | - | – | |
| TMHMM | 218 | 237 | 20 | - | – | |
| Phobius | 218 | 237 | 20 | - | – | |
| Phobius | 238 | 242 | 5 | - | – | |
| Phobius | 243 | 262 | 20 | - | – | |
| TMHMM | 247 | 266 | 20 | - | – | |
| Phobius | 263 | 273 | 11 | - | – | |
| TMHMM | 273 | 295 | 23 | - | – | |
| Phobius | 274 | 294 | 21 | - | – | |
| Phobius | 295 | 306 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0063600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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