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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0066400 |
| Transcript ID | LotjaGi4g1v0066400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT1G29050.1 TRICHOME BIREFRINGENCE-LIKE 38; Swiss-Prot: sp|Q8VY22|TBL38_ARATH Protein trichome birefringence-like 38; TrEMBL-Plants: tr|I1KLT0|I1KLT0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0066400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8318656..8326247) extracted from Lotus japonicus Gifu genome v1.2.
CTTAGCCTCCACAAATCACATTTTATATTTTTTTCTCACTTCACAATTTGTTTCGGTCAAAATCCCATAAAAGTTGTGTG TCCAAAGAGTGTTCGCGGGGCTCGGGTCCAAACAAAGGGACCGGTAAATTTAATAGTTTATCTTGAAGACACAAGATTCA AGCACATCTAATATTATCATAGAAATTGGTCGTGCCCGTGACATGGTGCAAACAAGGGGAAGGCTAAAGAACAATTCATC CTCAATAATGTAGTGTAGTGACATTCGATTATCAACATAAAACAATCTCCACAATTTCAAATCCTACTACCACTCACGAA TCCATCCAAGATCCCCCAGCTCATGTAGCAAAATTAAAATCAGTGTTCTCTAGCACCACTCCATGTGAACCCACCACAAC AAGCCACTGCATTTTGTTGACTTCCTCAATCCTATATTCGTTTAAGTTGTGAGATAACATTAAGTAGTAGGTCTTTACTA ATATCACCAAGGTATCGAACCATCAAATAGATGTTTAAGGAACTCAGCTATCTACCAACCGTGTTAAACCTTGTTGGTTC TTCTATCTATATATATCATCGACAATACAAGTTATTCTCTTATTCTCAGTTTTGGAACCCGACATAGTATTTTTAGTCCC ACATGGGTTTCACTTTCAAGGTCCATGTCTTGTTTTTGTTCTCTCTGTGTAGCCTAGCTTTTATTGTTGCTGGTGCAGCA AAGTCCAAAAGTAAGAGTCTCATAAGAAGTAGAAAGGAATTGGGCAGGTGTAATTTGTTCTTTGGAAGTTGGGTGATTGA CCCTTCACAACCTCTCTATGACTCCTCAACCTGTCCCTTCATTGATTCTGAGTTTAATTGCCAAAAGTATGGAAGACCAG ACAACCAGTATCTCAAATACTCTTGGAAGCCTGATTCATGTGCCTTACCCAGGTAGTGTTCAAATACTTCCATGATGTGT TAGTTTTTAAAAATGTTTGGTGAATGGATTTTGTTAACAGTTCTGCAATCTGACATTTGTAAGTAAAAAAAAATTGTGAT TAGAGACTCATTGATTGAAATTCAAAGTAAGGTAGCGTTTACTAACGGAACCGAACAAGATAGAACAGAATAGCACATAA CAAAATGGAACACAATAATGTTCAAATGTAATAAAAAGTTTGTTTCTGTGTTGCAGGTTCAATGGGGTAGATTTCTTGAA CAAGTGGAGGGGTAAGAAGATAATGTTTGTGGGTGACTCATTGAGTCTCAACATGTGGGAATCATTGTCCTGTATGATTC ACGCTTCGGTGCCGAATGCCACTACCAGCTTTGTGAGGAAAGGAACACTCTCTACTGTGATCTTTCAGGTTACATTTCTG ATCTCTCTGTCTCCTCTCTGTTTTATATTTTAATACACAAACCATTACTGCTTCTTCTGTTTTCCTGAATACAACATTCT CATGTCTCTATTTTTTTTTTCATCCAATTGTTTGTTTCTCTATTATATCATTTTTCTCCACCCCTAGTTTAAAAACTTGA GGTGATAAATTGAAATTAGATTTTGATAGATAGGTCCAAAGTAAAGTTGTGTGGATTACAGGGCAAGGTTTTATAATAGG TTTTTGATTTAATTGTACTTTTGGTTAACGTTTAAATTTAGTTTCCAATGTTTGAAACAAGCGATTTTGGTCTTCATATT TTGGACTTAGTTAAACAACCGCGTTAGATCATAGATCCAATTAAGTCATTTTCAATGTTCCAAATTAATAGACCTATGCA TAGTTTGATGGCAATACTAATCTTGGGCCTAAGGAGATAATAGGTTTCCTCTTACTGGGTCAGTAAAACACAAATAGCAG TGAATTAAGCACCTAACCCCTCCAAAACAGAAGTAGAAAACAGGAGATAACAACTGTATTTGTTACCTCTTCGTGAGATA TAGAAGTCACTTGTCACATTCAGAATAGGTGTAAAAAAATATACTAGTAGAATCAAGAATAAATTGGGATCAGCATACTC AGTTAATGAAAAATTGTTATGTTCAGTATCTAAAAATTGTAGCATGTAAAGATTATGTGTGTTAATGGCAATCAATTTAT CAGTCAATTTATCTTTAATGCTTAAAGATACATGTGAATAAGACTTGACAGGCTGTGAGGGAGAGCATGCCAACCTGTGA TTAAATTTTCTTACAACTTGGAGGCTCTCTACAATCATTCGCCTTAATTATTTTTGTTTAATCAACATCAATCACGGGAC ATGACTGAGTTAATGTCATTTAAAAATCATTCATGCCATGGCATTCAAAAATAAATGTAACATTCATACCTAAATTAATA CTACAGAGTAAAAAATTAGTAAAAAATCATAATTGGGGATGTAAATTATACAAGCTTATGCTTTGGATATAATAGGAATT CAATAAATTAAATTGCATTAATTTGGTCCATGTAATTAGAGAATGCAATCAAGGGAAAGTGATTTATGAGCATTTAGGGG AGATGATCTCAACTTGTTTAATTGGCTTGTACCCCTATATAGGCAATTTTGATGGAATGAAATTTAATAGGAATTCACAA AGATAAATCAGAATAAATATGGTTTTACTCAATTACAAAAAAAAAATGATTTTATTCACAATAACTGCATTACTTTTGTA GTTAATGTTATATTTCTAATTTGATTCGTTAATTTCTTATAGTTAGATTTAATGATTTAGTACAAAAATAACTTTTATTT CAGTATATTTTTTAAAATAAGTTAAAAATTAGTTCATTTAAGTAAAATGTGAATATCAAGTTTAGATTCAAGGAATTGGT GTCCCCATATGATAGCTCAAATGGTAGGAGCTAGGGCATATGAATTGGGTAGGGGAGGTCCAGAGATCGATTCCTGACGG GTGCAATTTAACTTTTTGATGTATCAAAAAAATTTCAAGAAATTGAGTCTTTATAATCATTGATAAGAAAATCAAAATAT TGAACTTCTAGCATCTAATTAACAGTTCAATCTCTGAGCGGTAGGAGAAGAGTTTATTGTAAAATGTGAGTAATTCAATC TCATAACTTCAAGGACATTAGTCTCATGTTTAATTGTCGGCTGTGAAGATACTGTGTTTTAAAAAAATTCTCAACTATTG ATTACGAAAACCAACGATTGAGAATGATTGAGAATTTATTAAATTCATATATAGCCTCTTGTACATATACATGTACTCAA CCAATGATTTTCTAATAAATGGAGCTCTCAAGTGTAGTGTTACCCACTTTCCTCCCTAGTTTGAGCAGAAATTAAGTAGC ACAATTCTGTGACTGAGAAATGTTCACGAGATTCATCATAAGGGACAAGTGGAACAGCTGGTTTTCCAATATTCCATTTC CATGAGCTCACTCACGGACTGTTCCACAAAATTCAACTAAATTCAGCATGTTTATCATTTTCTATAATCCACTTTGTAAT ACTTTTATTTAAGTTTAATCTCAACCTCCCAAAATGGCAATGTGGTTTACTAATGAATGATAATTGGTGGGGTTGCGCAT GCAGGACTATGGAGTAAGCATACAGCTATATCGCACACCATATTTGGTGGACATAGTTCGAGAAGATGTTGGTGCAGTAC TTGCACTAGACTCCATACAACAGGCTAATGCTTGGACTGATCTGGACATGTTGATCTTCAACTCCTGGCATTGGTGGACC CACACAGGAGATTCTCAAGGGTATGTATGTATGCCTTCTTGCACAATAAATGCAGAATATTACAGGGTGAACAAGCCATC CATTACTATCGGGTGTAGATTAAAATCATGGTATATCACTAGTCAATCACTTCGTCCCCGAATGATAGCTCAAGTGGTAA GAGCTATGGACATAAGGGTTGGTGGGGTGAAGGGTCCCGAGTTCAAACCCGAATAAGAGATTATTTTACTAACATTTCTA ACAACTAACATTTGCCTATTAAAAAAAAAAAACTAGTGAATCACTTCAAAACATGTCAACCCTACAGCTTCCCTACATTA ATCAAGATTTTAAATTACTCTCACAATCGGGTCATATCACAACTCTTAATGGGACAAAGAGTTGTAGATGAGTCGTTATA TGTGAACATAAGATTTTGGGTCGACATACAATTAATATATAGGTTAGCGGCGATTTTTTACCAAACAAATGTATGTGTGT CGGTCAAAAACCATCACTAACCCATATGTCAATTTTATTCCCGCAAGAAACCGTATATTCAGTTATCATTTTCGATTATG AATAAATGTGGTTGATTATGTTACAATTGCGGTTACAATGATGAAGTTTTAGACACCTTCAAAACTGCGATGCCACAAAA AGAGTAGCGGATCTTGATCGCCACTAACCCATTTGATAATTATATGTTCGTGAAAAACCGTAAATTCAATTATCATTTTC AATTGCAGTGCTTGACTAGGTCACTTTGCGGTCAGAATGATTAAGTTTTAGACACATTGAAAACTGTGATGCCACATAAA GAGTTCTTGAATTTAAATCATCTTATTTACATATTAAATGTAAATGAAAACACAACTAAATATAACTTCAGAACTGAATG CATCTCTACATGATAAGGTAAAATAAGTGTTTTGCTTGGTTTAGTCTGTGTAATGTGTATCACATGACCTCATTGATTCA ATTTCCTTTTATGTTTAACACTCAAACTTGTTGACATTTGCCATGTTCAGATGGGATTATATAAGGAATGGTTCCAATCT AGTTAAAGACATGGACCGTTTGGAAGCATTTTATCAAGGGTTAACCACTTGGGCTAGATGGGTTGATCTCAATGTTGACC CTACCAAAACTAAAGTCTTCTTTCAAGGGATTTCTCCCACTCATTATCAGTAAGTAACTCTATATGCTCATCTATTTTTA ATTTTAAGAACTATGAAGTGCAAAATTCTCTTCCTAGTAGTTTGTGTTATGAGATTATAGAAACTAACACATTAGATATT TTGTGATGCCCCTTCACCTTGATTAATTTCAGAGGCCAAGAGTGGAATCAACCTAAGAAGAGTTGTAGCGGACAAATTGA ACCGTTATCTGGGTCATCATATCCAGCAGGTCTACCTCCTCCAACTACAATAGTGAACAAAGTGTTGAAGAACATGAAGA AACCAGTTTATCTGCTTGACATAACACTCCTCTCGCAACTTCGAAAAGATGCACATCCTTCTGCCTATGGCGGGAATCAA GGGGGCAATGACTGCAGCCATTGGTGCTTACCAGGATTACCTGATACTTGGAATGAACTCCTAAATGCAGCTCTAATGTG ATCAAGATAATTATTTAGAGTTTTTTTATTTTGATAGATGTTCAAAAGGGTGACTGATTCAATTGTAATACAAGACTCTT GAAGAAAACAGAGTCCCATACCAAGTCAGTCAGGGAGGGAGATCAATCTGTTTTACATGTCATGAAAATGAGAAAATATA ATTTACTTCAAATCATAGAATGCAATGGAACTTTACCTTCGATTGATGCATATTTCATGATGAATAGTTCTTGTTTCTAA CAGTTCACAAATTTCAGTATAATCAATTTTATTTCTAACAGTTTACAAATTTCAGTATAATCAATTTTATTTCATAAAGC TTTTTTATAATGTATAATGTTGTAAAATAAGAACGATTTTTAAAAAGGAAAACAAACAAATAAATTCGCTCAAAGTCATT ACATTGATTCATCAAAAAAAATTTACATAGCAGCACCAGAGCGACATCATTTCATCATAGGGTTTAAAAATATCTAACTC ATCCATCCAATAAGAATCAAGCAAAAACATTTCTTTTTTCGCCAAAACTGGCCAAATTGAATCAGTTCATGCCAGTTTTG AAACATAGCAGATCCATAATGTTGCTCAAATCAGTTACCAAGCAGGTTCACAAGTCTAACAAAACAGTTCAGTTTGAGCT TTATAACATAGCATAGACATTAACAATTCATCTTCTACCTGACCTGACACAAATATTGTAATCACAGCCATTCACATGTC AATGCAAATTCATAGTGGGAGAAATGGTTGCATCACTGAAGCTGGAGCTATGCTAAGTGCAATGAGGGATGAGGGATGGT CAATTAGTACTACCCTTCATGTTTGGTAAATTTGATTAGTTAGATCTTCAGCTGTCATCTGAAATGATCCAGGTGCTTCA GAATTCAGTGACAGCAACCAAAAAAGAGGACAATCTACACAACTCCATAGTAGTACTACTTCTATTAGTATAATGACAAC TGTCCTCTTATGATTAATTTTTGCTGTTTCAAACATTTAAAAAAAATAACTGAATGTGTTAGAGAGTACGAGTCTTCAGT ACTGCAGAAATACCAAAGATTTGCTCCACAAAAGAGAGCGAATGTGCAACAAGCTTTAGTTATGGGCATCAAACTGTACC CTGCTAAGTCAAAATTTGAAAGTGACTTGGCTGAATCTGATAGACCCCAAATAACTCTTCTCAGATGGTCTTTTCTGTGT AAAATCTTTACTAAAATTACTTGGTTAGAATAAAAGTTAGCAAGCTAAAAGTCTTCAATCATTTCTTCGGGCAAAGCCTT CTTTACAACTCCTAACCTTAATGGACAAATAGACAAGTAATCCTCAATCTAAAGTGACATTTCAAGCTACTTTTTCCAGG GTTAATGATGGATGGTTAAATTGAGTTTCAGATGTATCACTATCATCTGTAGTTAGATAATGTTATTTAAGATAGATATA TATTAATTTTCTAAAATGCTATGATTTGAAGCTACTGGATAATAATTAATCAACCAAAAGCACAAACATAAGAATATAAC AAAAGCAAAGAGTAAGATTGGCATGATTCAAAGTCTAATACCAACTGATAGTTATCTCAAAAAGCATTACAGGATAGTAC CAGTTATAATTGGAAGGAGGCCATGAATATGCCTATTACTTCATCTTAGCCTCCGTAAACAGAACATGCTTATTAACCCT AGGATCAAATTTTCGAAACTCGAGCTTTTCGGTAAACTGTCTTGGTTTCCTCTTAACATAGAAGAATCCAGTCCCAGCAG CAGATACTAGTTTTACAAACATCTGAGCCTTCTTCTTCTTGTCACCCATTCTTGATTCTGGCAAATGATAAATAAATTAC TATTACAAACTCAACCATTAAGAACCACACACTCTAGAGAAACCGAAAACAAGAGAAGTGCATTTTTTTTTATACAAATT AACCAACGCGAAACCTAGCACAGACACTAACAAAATGGATGGTATAAAATCGAATGGTTTAAGATCAGAGAACAAGAGTG AACAGAAAATTGGACAAAGGTAAAGTTGCAAAAGAAGAGAAGCGTGCGTACCTGGGAAGTTACAGATAGATAACTGAGCT TCGGAATCGGAGGAAGGGCTGCGGAATTGGGGATTTAGCTACTTAGGGTTTTCAAGTTCCAACGAATGAGCGAGCTTTCA CAAGTTTAATGAAACCAAATAGTAACTTCTATTCTAAGTCAAGGGGTAGGAAAGGGAAAGGCTTCCAAGAAGCACTTCCC TTGTTTGCGAGTTCTTAAAATTGAGGGGTGAGGGTTCATGGTATTTTAAAACCCTCCAAAACTCTCTATTAG
CDS sequence (LotjaGi4g1v0066400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCACTTTCAAGGTCCATGTCTTGTTTTTGTTCTCTCTGTGTAGCCTAGCTTTTATTGTTGCTGGTGCAGCAAA GTCCAAAAGTAAGAGTCTCATAAGAAGTAGAAAGGAATTGGGCAGGTGTAATTTGTTCTTTGGAAGTTGGGTGATTGACC CTTCACAACCTCTCTATGACTCCTCAACCTGTCCCTTCATTGATTCTGAGTTTAATTGCCAAAAGTATGGAAGACCAGAC AACCAGTATCTCAAATACTCTTGGAAGCCTGATTCATGTGCCTTACCCAGGTTCAATGGGGTAGATTTCTTGAACAAGTG GAGGGGTAAGAAGATAATGTTTGTGGGTGACTCATTGAGTCTCAACATGTGGGAATCATTGTCCTGTATGATTCACGCTT CGGTGCCGAATGCCACTACCAGCTTTGTGAGGAAAGGAACACTCTCTACTGTGATCTTTCAGGACTATGGAGTAAGCATA CAGCTATATCGCACACCATATTTGGTGGACATAGTTCGAGAAGATGTTGGTGCAGTACTTGCACTAGACTCCATACAACA GGCTAATGCTTGGACTGATCTGGACATGTTGATCTTCAACTCCTGGCATTGGTGGACCCACACAGGAGATTCTCAAGGAT GGGATTATATAAGGAATGGTTCCAATCTAGTTAAAGACATGGACCGTTTGGAAGCATTTTATCAAGGGTTAACCACTTGG GCTAGATGGGTTGATCTCAATGTTGACCCTACCAAAACTAAAGTCTTCTTTCAAGGGATTTCTCCCACTCATTATCAAGG CCAAGAGTGGAATCAACCTAAGAAGAGTTGTAGCGGACAAATTGAACCGTTATCTGGGTCATCATATCCAGCAGGTCTAC CTCCTCCAACTACAATAGTGAACAAAGTGTTGAAGAACATGAAGAAACCAGTTTATCTGCTTGACATAACACTCCTCTCG CAACTTCGAAAAGATGCACATCCTTCTGCCTATGGCGGGAATCAAGGGGGCAATGACTGCAGCCATTGGTGCTTACCAGG ATTACCTGATACTTGGAATGAACTCCTAAATGCAGCTCTAATGTGA
Protein sequence (LotjaGi4g1v0066400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFTFKVHVLFLFSLCSLAFIVAGAAKSKSKSLIRSRKELGRCNLFFGSWVIDPSQPLYDSSTCPFIDSEFNCQKYGRPD NQYLKYSWKPDSCALPRFNGVDFLNKWRGKKIMFVGDSLSLNMWESLSCMIHASVPNATTSFVRKGTLSTVIFQDYGVSI QLYRTPYLVDIVREDVGAVLALDSIQQANAWTDLDMLIFNSWHWWTHTGDSQGWDYIRNGSNLVKDMDRLEAFYQGLTTW ARWVDLNVDPTKTKVFFQGISPTHYQGQEWNQPKKSCSGQIEPLSGSSYPAGLPPPTTIVNKVLKNMKKPVYLLDITLLS QLRKDAHPSAYGGNQGGNDCSHWCLPGLPDTWNELLNAALM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| PANTHER | 8 | 360 | 353 | 1.7E-198 | – | |
| PANTHER | 8 | 360 | 353 | 1.7E-198 | ||
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 25 | 4 | - | – | |
| Phobius | 26 | 361 | 336 | - | – | |
| Pfam | 42 | 93 | 52 | 5.8E-22 | ||
| Pfam | 95 | 358 | 264 | 2.7E-94 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0066400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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