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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0067600 |
| Transcript ID | LotjaGi4g1v0067600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HAD-superfamily hydrolase, subfamily IIA; TAIR: AT5G10460.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O32125|YUTF_BACSU Acid sugar phosphatase; TrEMBL-Plants: tr|G7JNP6|G7JNP6_MEDTR HAD-family hydrolase IIA; Found in the gene: LotjaGi4g1v0067600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8460856..8464370) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATGAATAGTGTTACTCAATTGAGTAAGTGTCAAGACTTCAAAATTGATTAATGGAAGCACTATATGCATAAGACAG AATGATTCCGAAATGCTCTGCTTCTCCCATCCACAGTCATCCACTTCAGTTCCAGCCCTTGACCGGTCTCCGGCAACTCG CCGAAACGCGTCGTTTCAAGGCACGATGCATTGATTGATTCTCACTTGTCATTCAACGATTCTCTACACCATCGATATGC TAATGCTCCTTCTCTTTACAGGTATGGCTTTTGGATCAATTTGGAGTTCTCCACGATGGAAAACAACCTTATCCTGCTGC AATTTCAACATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTCTTGTTTCAAATCCT ATGATGTTATGCTGAATTCTAATTAATGGTTGTGTTTTGATTAATTTTTGATTTTCTTAGTAGAAAGTATAGCAAAGACG GGTGCTAAGATGGTTATTATAAGCAACTCCTCAAGGCGCTCATCGGTTACTCTTGAAAAAGTCAAGAGCCTTGGCTTTGA TGCTTCTCTTTTTCTTGGAGCCATCACTAGTGGAGAACTCACTCATCAGTACTTGCAAAGGTTGCTTTTAAGTTTATTCG GATACCCGTATTCGTTGTCTTCTCTTGTTAAAGTCCCATTTTCGAAGAGGTTATTTGAGTTTATCTTATAGCATAGCCGT AAATGCTTAAGCAAGTGTTTGAGAGAGCTTATGTAAATAGTTTATGACTTTTATATGTAGGGAGCTTATTTTCATAAGTT GCTCGGATTAACTATGAATAAGCGTTTCTGCATTTGAGTGAACAGTTTAATTAAGCGCTTATAGCACAAACACTTACTGA TTTGAGGAACTTAATGGAATAAGCTGAAAATAGATTATAGGTAAACATAAGCTCTTATTAATTAGCTTATGAAAATAAGC TAAAACCAGTTTATAGATAGGCCATAAGTTTTCTCAAACACTTGCATAAATGCTTATGTCATAAGATAAACTCAAATAAG CTCTTCCAGACGAGGCATATATCTATCTACCTTTAACCCGTTTCTCAAATTAGGAATTAGTGCTTATTAGATTAGTACTT TTTGCCATACGTGTTTATTAAGTTGTTTACTTAAACGCCGCATCCTAGGTCTTGTTTCTTTGCAATGTTTAATTTAATTC AAACTGTAATTTTTTCTGTTACATCTACTGCTTGTGGCTTACTGCTTGCAAGAACATGTTAATGTGTCCAACAGATGCAT TTTGGTCCATGTTCAATCATTGGTTCTAATTGTATCATTATGTGTTTCTGCATTTTCACTCTTCTTATAAATTGTGCTTT GAACAGGCGAGATGATCTTTGGTTTGCAGCATTGGGAAGGTCTTGTATTCATTTCACCTGGAGTGGCCGTGGAGCAATAT CTCTTGAGGTGTGTAGAGCAACAATGCGTCTTAGCTTGCTTGAATCATATGTTCGCTATATTCAATTGCTACTTCCTATA TGTTGTTGTCCTGTACTATTTAAGATGGCATGATTCATGGAGTAATTGATTTCTTGGTAAAGTAAGGAGCAAAGTGGATC CAATTATTCTGGTGATGATGGCTTCCTTCCTTCTAACTAATTTAAGGTGTTCAAAGAATTGAGGAGTTTGATTTGGACTA GGTTACTGAGGCCTTTTTCGTTTTTATCCAAGTCACAGTCAAATTATTTTCAATTATCTCAAGTCTGGGGTGTGTAAAGG AATTGTTTTACACATAAAGATGATTCTCCCAAAAATAATTTACATCATGGGTACTAAAATTTTACCCTATTTGAATAAAT TTTAGGGCTTAGACTTGCAAGTTGTGGAGAAAGTTGAAGAAGCTGAGTTTGTTTTGGCTCATGGCACTGAAGCATTGGGG GATGCCAACGGGAATGCACGTTCAATGAAACTTGAAGACCTTGAAAGAATATTGGAGCTTTGCGCTGCCAAAAGAATTCC TATGGTGGTAGCCAATCCTGATTATGTAACTGTTGAAGCAAGAGAATTGCGTGTGATGCCTGGTGAATTTCCTCTGCCTT CTTCTTTCTCTTTTGCACCAAATCTTAAAGAGTAGCACCTAAATAGTAATTATAAGTTACTTTTTCAGCCAAAGTTACAG CATAAGTTTATTAAAACACATTGTTATCATGACCATGTCACATGTTTAAGAATTGTACTTGTTCCTGTTTCTTGATTGAG TTCCTTTTTCCTTCTATCCAGTTTCACCTTACACCATTTTTTGGGTGTATTTTTAACTTTACTAGGTACACTAGCAGCTA AATATGAGAAGCTTGGGGGTGAAGTGAAATGGATGGGCAAACCTGATGAGGTGATGAAACCATTTCTGTGCAAATTAATT CAATTTTGATAGTTGTTTTCTCCTGTGTGCAACCCAAGATTTTATTACTTAATGCATATGCATATTTGGAAATCCCTCTA CAAACTACAATTAATTCATTCTTAAATCTAAATCCAAAATCAATTTTGGGAAAAAACTTCTATGAGTAGCTTCTTTGTGC CATAATTGATTCTGAAGAAAAATAAATTGATCCAAACATGCTATTAGACTCTTAGATTAAATGCACACAACGGTACAAGT AAGAATACATATTCAGCTCATATGCTTGTCAATTTACTCCTTAGTTGGCTTTATTATCTGGTGCACAAGGCAAGTCTCAA CTTTTGAAGTGATTAAATTGCATGTTTGATCCCTCAAGGATTCTTTAGTTATTGCTTTTGGTTATTACAAGTGTGCACAT TGTGCTTGTAGTACTCTTAAGTCTGAACATGCAAAAAAAGTAAATTCATGGTTTTATGGTATCAAGTTAAGCTAAGTTGT GTCCAGTAACTAGCATTAAAATTTATCAGATCACTGCCAAAAAACAATTAATGCAGATATGTTGCTAGCAAGTAACATAT TTATGTAATTGATAACGTGATTAACATCTTTGTGGATCTCAACATATCATCTCCTGTTGCATTTGCATATCCATCCTTAT TCCATGTTGTGGATAGTATCCGTAACTATTGAGATTGATCAGATAATCTACAAGTCAGCCATGGCCATGGCTGGCACAGA TGTTTCCGACTGCATTGCTGTTGGTGATTCTCTCCATCATGATATAAAGGGTGCTAATGCTGCTGGGATAAAATCAATTT TTATCACTGGTGGGATTCATGCAACTGAACTTGGACTCCATGGTTTTGGAGAAGTTGCAAATTCATCTTCTGTTGAATCA CTTGCAACGAAATATGATGCATATCCATCTTATGTTTTGCCTGCATTCACATGGTAGAACATTGCGTGGGCTGCAATCCA AACCACTCCACTTATAATTGTAATTTTTTAAACCATTATATGATTTATTGGCCATTGGTAGAAAGAACAAACTCTATGTA AAGATATTTGGAAACTGTTGAAAACACGAGAGTATAGTGCATGCATGTGGTATTTCATATTTTCGTGATTTGTTG
CDS sequence (LotjaGi4g1v0067600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCCGAAATGCTCTGCTTCTCCCATCCACAGTCATCCACTTCAGTTCCAGCCCTTGACCGGTCTCCGGCAACTCGC CGAAACGCGTCGTTTCAAGGTATGGCTTTTGGATCAATTTGGAGTTCTCCACGATGGAAAACAACCTTATCCTGCTGCAA TTTCAACATTAGAAAGTATAGCAAAGACGGGTGCTAAGATGGTTATTATAAGCAACTCCTCAAGGCGCTCATCGGTTACT CTTGAAAAAGTCAAGAGCCTTGGCTTTGATGCTTCTCTTTTTCTTGGAGCCATCACTAGTGGAGAACTCACTCATCAGTA CTTGCAAAGGCGAGATGATCTTTGGTTTGCAGCATTGGGAAGGTCTTGTATTCATTTCACCTGGAGTGGCCGTGGAGCAA TATCTCTTGAGGGCTTAGACTTGCAAGTTGTGGAGAAAGTTGAAGAAGCTGAGTTTGTTTTGGCTCATGGCACTGAAGCA TTGGGGGATGCCAACGGGAATGCACGTTCAATGAAACTTGAAGACCTTGAAAGAATATTGGAGCTTTGCGCTGCCAAAAG AATTCCTATGGTGGTAGCCAATCCTGATTATGTAACTGTTGAAGCAAGAGAATTGCGTGTGATGCCTGGTACACTAGCAG CTAAATATGAGAAGCTTGGGGGTGAAGTGAAATGGATGGGCAAACCTGATGAGATAATCTACAAGTCAGCCATGGCCATG GCTGGCACAGATGTTTCCGACTGCATTGCTGTTGGTGATTCTCTCCATCATGATATAAAGGGTGCTAATGCTGCTGGGAT AAAATCAATTTTTATCACTGGTGGGATTCATGCAACTGAACTTGGACTCCATGGTTTTGGAGAAGTTGCAAATTCATCTT CTGTTGAATCACTTGCAACGAAATATGATGCATATCCATCTTATGTTTTGCCTGCATTCACATGGTAG
Protein sequence (LotjaGi4g1v0067600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIPKCSASPIHSHPLQFQPLTGLRQLAETRRFKVWLLDQFGVLHDGKQPYPAAISTLESIAKTGAKMVIISNSSRRSSVT LEKVKSLGFDASLFLGAITSGELTHQYLQRRDDLWFAALGRSCIHFTWSGRGAISLEGLDLQVVEKVEEAEFVLAHGTEA LGDANGNARSMKLEDLERILELCAAKRIPMVVANPDYVTVEARELRVMPGTLAAKYEKLGGEVKWMGKPDEIIYKSAMAM AGTDVSDCIAVGDSLHHDIKGANAAGIKSIFITGGIHATELGLHGFGEVANSSSVESLATKYDAYPSYVLPAFTW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 315 | 301 | 4.2E-145 | – | |
| PANTHER | 15 | 315 | 301 | 4.2E-145 | – | |
| TIGRFAM | 30 | 273 | 244 | 6.8E-47 | ||
| SUPERFAMILY | 31 | 281 | 251 | 5.04E-38 | ||
| Pfam | 35 | 113 | 79 | 3.9E-14 | ||
| Gene3D | 35 | 280 | 246 | 2.0E-46 | ||
| TIGRFAM | 36 | 275 | 240 | 1.4E-30 | ||
| Gene3D | 112 | 226 | 115 | 2.0E-46 | ||
| Pfam | 226 | 281 | 56 | 6.0E-14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0067600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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