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LotjaGi4g1v0069000.1

Overview

Field Value
Gene ID LotjaGi4g1v0069000
Transcript ID LotjaGi4g1v0069000.1
Lotus japonicus genome version Gifu v1.2
Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G05710.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9LT67|BH113_ARATH Transcription factor bHLH113; TrEMBL-Plants: tr|I3SIF6|I3SIF6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0069000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:8705807..8711696) extracted from Lotus japonicus Gifu genome v1.2.

AAATTTCATGTCTCTTTCAAAAACAAGCATGGTTTTTAACATAAAAAAGATTATGAAGAAAATGAGAAAAACTAAAATGT CCCTCTTGGTTGGATATTAGCTGTCAAGTATATATTTATGACAATTTTCAATTAAAAATCTTACGTAAGGAGAAATTGTA TTATATTCATTTTAGCTTTATAAAATCACATTTTGACACTAACCTTTCTCCCCCTTCCTCTTCCTCTTCTTCCTTTTCCA CTAGAAACCACACCACTCTGTTCCTCTTCCTCACTGCCCCTCTTCCTCTTCTTCCATTCATGAACTTCCACTAGATTTTT CCTTTCAAGGTCAAGTACCTAACTCACTCACTTCACTGTCCTATTTGTCTCTTCTAGTAGTGGTGTCTGTGACTTTTTTT TCAATCAAGTTTCTAAATTTTCCTCCAAAAGTCTTACAAAATGAAGTTCTGATTACAGGCACAGCTTAAAGTCACAATCT TTCCAACTTTTGGAAGAAAAAAGAGGGCTTTTGGTTTCAAACATTTCTGGTTTCTGCTCCAAAATCAAAGATGATAGCTA GCTCCTTCTGCAATGCTGATTCAGTGTTTTCAGTAAGTTCTTAATTGAATTTAACATCACTTTTTCTTCTTCTTTTTTGG GTTTTCAATTTTTTTATTGTTGTTGATTAAAGTTCCAATTTTTCATTTTTTTTTCACTACAGTCACTAGAGTATGCATGT ACCATCATAATGAGTGGTTGTGTTTTTACTTTGATTTTCTCTACACTACAGTAACCTTTGTTTTCTTCCTTAAATTAAGT AATTGTTCTTATCTCATTGTCAATTAAGATATTAACATTAAACTAAAGTAGTTGGGAAGATTTTGCACTCAAATTAGATT CGTTCATGCAAAGTGTTATGTTTATGTGTGTGTGAATGTGTATATTGTATATGCATGTCGTTGTCCAAAAATCAAATGGT GGGCCCACCTTACGATTGAGGTTCTTGTCATCATCATGAAATTAAAAATAGATAATTAAATTAAATGATAATTTTGATAT GGTTACTAGTAAAATCACATTCTGGAGAATTCTTGTACTAGCATATTTGGACCATTGAAAAACTGTGATGAATTCTAAGC CATTGGATTTGTCGACAGTGATGACCCTTGGCCTGTTTGAAGGAGCTTGTGTGATTTGATTGCAATGCATGGCTGATTCT TTTCCCTTGCAGTCAGACTCAGTCTAGCATCATGATCACGGGGCCACTTTTGATTTTGGGTTATGGACGGTGTAGCTGTT AGCTGTTTTTTTTTTGTTCTAAGTTTTTTCAATATTTAATCAGTGGTCTTTTCTTATATGATGGCATCGATTTTGAGAAA TTTCCGTATTAGTCTGACTAAATCAGCGCATGTTGTTTTGATATATCAGTATATAATTACCAAGGTGCAAGGTCGTATGT GAATGCAGCTTGAGAGCTTGAGTTGAATACTTGGTGGAGAGAACTTTGCCACCACACTGATCCTACCCGGCTCGAACATG ATTATGTGCTTTTTTTCCCTATTCACAGTAGTTTGGGAATCTAACCCAACGACTTAGTTAAAGGATAAAGGGTTGAACCA CTCTAGTTCCTTATTTTTAACTATAAAAATGTTACTTTGTTTTCCCTATCTTTTTTATTTTTTTTTAAAAGATCTCCTAG AGTAAATTTTACCAATTGGAAAAGTATGGACTTTTATAATCCTTTGTATCAAATTAAGGCATTGATTAAGCTTCTTTCCT TATTTTCATACTTTTTTTAACTTTCATTGTGTTTTGGGGTAAAGATGGATTATTTTAATAAAAGTAGCCAAGTAGGCAGA TCCATTCAAAGGGTTATCAGGGTACTCAATAGATACCACCAAATGCGTCCTTGGGTTCGAATCCCCTTGAATGCACTTGC ATTAAATACTTGATATGGAGACCTTTGGTGCTCGTAGATGTTCTACCCGGTTCGAATAAGATTGTCTTTGTTGAGGATAC TTGCGGTTTAAACAAAAATAGAGATACTTAATAGATCTCCATACACAAATGCCACTCACCAATAATCCATGGGTGCAAGG GGGTAAGGATCTCCTTAAGATGTATGACAATCAAGCTGAACTAACTGAAAATACAGTCGTTAGCTTGTTCAATTACACCA ATAAAATGCTATCAGGACTTTCTTCAATTACACTGGGTAGGATTCGGTTCTCCTCTCACTTCAAAGGGTTAAGTAAGTTA TTGTAGCCGTTGTGATTTTGATCACTTACTTGCACATGTATAGCACAATATGATGTCTTTTAAATCTCAGCCATTGATTT CTCAATCAACGGCTACAGTAACTTACTTTGCCTTCTAAAGTGAGTCTCACACTTTAGAGGAGCCAGATCCCTCTGGATTA AACTGGTTTTCTACTTTATGTATTGTATATGCACTATGATTGTGTGTCTGTTACTAGTCTATGACTACTGTGAACATAGT CTATATCTTCACACTTAATTGATTTAAAGTACTTAGTACATTCTAGTTCTACTATGGTAAGAGGAAATGTTGATACTTAG GCTTTCTTTTACCAAACTTGTTCCTGTTTTCATTTTCCCCCATAATTCACGCTACTACAATATTTTCTATCTTACTTTGT TCTTATACTGGATTTTTTTTCTGTTGTTGCCACCAGAGAGAAGAGGGGATAGATGTTAGAAAAATGATCGGACATAAAAG GAGTCCATGCTCTGTTGATCAGAGCAGTTATACCTCTATTGCATCTAAAAAGCAAAAGGCTGATTTATCTATGAGTTCTA AGGTTTATTCTGCTTCTTTTTCTCCTTCTATCATTTTTGGTTGTTGAATAACAGTGCCATTTCCTTTTTATTTGTCTTTC AGTATCCACTCTTGTATTTATAGCAGTATCCTAGCTTTGAAGTTTTTCATTGAGAAACAAGCATTGGTGCCTCTTCTCTG TATGAGTTTCCTTAATCATATTATTAGTGGTTGTTTGTATTAATAATTTCAATTATTGAAAACAGCTTCCCTATGGTAAG AATTTAGAGACTTGAGTTCAGGTTGAGATCAATAACTGTCTCAATTCTAAGCCCTATTCAACTCTACTACTCAAAATCAA TAGATAAAAGAAAGAGTGAACATCCATTTCTTCCTGAAAGCTAAGGTTGAAATCACATCCGAGAGATAGGTGACATCAAT TTAGTCCCCGATTTGAGGGACTAAATTGATGTGAAATTTCTGTGTTTGAACCAACCTGTTGCATGGAACTCTCCTTGATG CATGACATCAATGCCTTGCTTCATTGAAAGTGACATAAGTTTTTTGTGTAACATTTCAAATGCTTCTGCTAATAGGATAG GAAGGAAAAGGTTGGAGAACGAATTGTTGCTCTTCAGCAGCTCGTTTCCCCATATGGAAAGGTACACCACAGTTAATTTC AGGCACAATGTATTTGATAACTTACTATTATTTACTTTGTATCTGGTGGTGTTTGTTATATCTTTTACTTGTCATACTTA TTTGACTTGAATGAATTGTTCTAAATTTCTGAGTCTAAAGACTTTCTGATTCTCACTGCAGACAGATACATCTTCTGTTC TTAATGAGGCGATGGAATACATAGGATTCCTTCATAAACAAGTTAAGGTTTGGACATTCTTGAATAACCACTTTCTGAAT TTATTGTTATAAATATCCTAGTAACTGGTTTAATACACCACAAGCATGCCTTATAATAATATTTGGACCTGAATCAAGTC ACCGTGTTCTCTGTCCTGATGTAAATTTCTTATAAACACACTTAAATAATATATTTCTTCATTTAAGGGAGCAAAACTAA ATGCTATTCTAATATCATATTAGAGCATTCCTAATGTTCCCTAGGCCTAGTTTGGACCTACCTGCAATCCGGATAAAAAT ATTGTTGCATTAACATTATTTAGATTTAGTTTCGCTGAACTTGAGCCATGAAACAAGATATTTATTCATTCAATTTATGT CTCTGATCTGTTATCCTCTTTCCCTCAATTGACCTTGTCATTACCACCCTACCCAAAAATCAATATTGTACCAACATTAA GTAGCAGTATAATGGGACTGGATGAAGTAAAAAGAAAGGCTTATTATTATCTTCAAGTAGAAATGTACAGTGAATCAGTG ATGACTGATGACTTAGTGTATGTTTGGATACCAGTGAGTGAATGTGAGTGGACTTTTATCCTAATCCGTAAAAGACTTCC GTTCACTTTTTCTTGAAATGAGTGCTAATGTCCATAAGCACTCATGCCAACAGGTATCCGAACATAGTCTTAGTTTATTG TTTCTCCGTATGCTCTAATACGAGATGTTGCAAATTCCAAACTATGTTCATTATCATTTTGATCTAATGCAAAGATTTTC TCTTCCTGTTTCAACAGCTGCTCAGTGCTCCTTACCTGGAGAGTTCACCAGCAACCATGATGGAGGTGAGCACAACATGA ATATTACCACAGTGGAGACTGTGGAGTAGGATATATGTATGCATGAGATCAAAGCTTTTTTGGCTTTTACATCATGGCAT TTATGAAAGATTTATTACACCAATGAGAATTGGTGAAGATGGATTCGTTTAATTAGATTCAAATCTTGTATCCCCAAACT GTCTCATTCTTTGTCCCACAAAAAACAAAATTAACATCCCCTCTTGGTACGGCAAGATTTCATTGGTGAGACAGGAAATT GAGACACTATTTGGGGATAGAAGATATTTATCCTATTTTAACCTGTCTTTAAACTGTTCTTGTTGTTGCTTCATATGCTA GGAAGGGACTTCATCAAATTTGACAGATCAAAATTTTAGTTAACTAGTGTTATTTATTCCTGGTGTTAAATGGGGTTCTA ATAGATTTTTTACCACTTCAGGGCATAGAGCCATGCAGCCTGAGGAATAGAGGATTATGTCTTGTTCCAGTCTCAATTAC TATGGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCAATCAAGACCACTTCACCAAAATCTGAGAAGGATATTG TCTCACAATTTCATTGACAAATTTTGTCCAAGTTGCGAAGCTAATCTTGTAGCTTGGAAATTTATCAAATTATGTTCTTA CATCTATGGAATCTATCATCTATCATAGTTGCTAAAATAGTTAGAAGTGTTAAGAATTCAATCTAGTAGCAACCCCACGC CTCTAAAATTTTAAACTGGTGATGGCGGTAAGCTATCAAGTTGCCATATATATCCTTAATTCTCTGTGCTGATTATAAAG TGTATATTTATAATTTCTAGCTGTACAATGATTCCATGTACTGACTAGCTTAATGGAAGTTGTTTCAAGATTTGATGAAG GTACGAATGTCAACATTAGACATTAAACTTTTTTTTCATTACTAGTGTAGTAGTCTTTTGACCTACATGTTTCAATGCTG TATGCATTATGTCACCCAGAAAAATGCTCTTGATTATGTTTATTTTTCACTTGAATCTTGTTTTTCTTTGAAAGGTAAAT GATATTTATTACTTTTCATGTTAAGATTTTTCTAGATAGAGCCCTTCTAATGTATTTTGGTTTCGAAGTAGATGGGTGAA GACTTTTTTATTTCAACATGTATTAATTTTTTTTTACTTGCTTGCTTTAGAGTGTTTTATACATCAGGGCCTAGCAACGC GCCCCCGCCATTTAACCAAAAACAAGTAAGACATTAATGGGGGGAAGGGTAGCTCACTTGGAAAGCTAGGGCTGTCCAGA AATGTTTGGTCCGACCGAAACCGACCGGCCCGCGACCAAAAATAGGCCCACTCGGTCGGGCGGGTCGGATGGCGGGTTGA GGGAGGGAAAAAACCGACTCCATATGAGTTGGTTCGGTCGGTTACGGTTT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0069000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATAGCTAGCTCCTTCTGCAATGCTGATTCAGTGTTTTCAAGAGAAGAGGGGATAGATGTTAGAAAAATGATCGGACA TAAAAGGAGTCCATGCTCTGTTGATCAGAGCAGTTATACCTCTATTGCATCTAAAAAGCAAAAGGCTGATTTATCTATGA GTTCTAAGGATAGGAAGGAAAAGGTTGGAGAACGAATTGTTGCTCTTCAGCAGCTCGTTTCCCCATATGGAAAGACAGAT ACATCTTCTGTTCTTAATGAGGCGATGGAATACATAGGATTCCTTCATAAACAAGTTAAGCTGCTCAGTGCTCCTTACCT GGAGAGTTCACCAGCAACCATGATGGAGGGCATAGAGCCATGCAGCCTGAGGAATAGAGGATTATGTCTTGTTCCAGTCT CAATTACTATGGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCAATCAAGACCACTTCACCAAAATCTGAGAAG GATATTGTCTCACAATTTCATTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0069000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIASSFCNADSVFSREEGIDVRKMIGHKRSPCSVDQSSYTSIASKKQKADLSMSSKDRKEKVGERIVALQQLVSPYGKTD TSSVLNEAMEYIGFLHKQVKLLSAPYLESSPATMMEGIEPCSLRNRGLCLVPVSITMGVAESNGADIWAPIKTTSPKSEK DIVSQFH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR16223
23 152 130 5.9E-59 –
PANTHER
PTHR16223:SF164
23 152 130 5.9E-59 –
Gene3D
G3DSA:4.10.280.10
43 110 68 2.3E-6
IPR036638
CDD
cd00083
44 100 57 1.10994E-4
IPR011598
ProSiteProfiles
PS50888
46 95 50 11.242
IPR011598
SUPERFAMILY
SSF47459
47 110 64 4.45E-11
IPR036638

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0069000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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