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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0070700 |
Transcript ID | LotjaGi4g1v0070700.6 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Kinase family protein; TAIR: AT4G33950.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q940H6|SRK2E_ARATH Serine/threonine-protein kinase SRK2E; TrEMBL-Plants: tr|A0A072UYK5|A0A072UYK5_MEDTR Sucrose nonfermenting 1(SNF1)-related kinase; Found in the gene: LotjaGi4g1v0070700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8965352..8968225) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTGAACCACCGCCATTCTTCCTTGTTCCCTTTCTTTCTGCTTTTGCACTTGGAATGAATGGATGATAATCATTTGAG TGTTGATTGAGCCTTCTTTCTTCACTTTTTTTTGTTATCATGTCATGCACTGCAGTTGTTCGCACTAAGCGGTAAACGTC TGATCATATTTTCTTCTTCTTCTTTTTGAGTAAATGGATCGACCTCCGACCGCTGTTGGGCCTGGAATGGATATGCCGAT CATGCATGACAGTGATCGCTATGAGCTTGTGCGTGATATTGGTTGTGGAAATTTCGGGGTAGCTAGGCTCATGAGGGACA AACAGAACGATGAGCTTGTTGCTGTCAAGTATATTGAGCGAGGTGAAAAGGTTAGTGTCCTAAATTCTTGAGGCTTTTCC TTCTTTCCTCGGTTCACTTGTTTTTAACTAATTTTTACTAATGTGTTTCTTTGTAGCATAGAATTCCTGTTTTTGGTTGT GAGAAAAAAACAATTTTATTGTAATTTTATGAAGGTATCTTAGTTTCACATATGTTGTGTACTTGTGTTACATTCTCTTG TTATATCTCTTTCTTGTATTCTTGTCTTTAGACGGACTTTAGGTCCTTGTTAGAATTTGGGCTAGCTTAAGGAGAAAGTT CATCTACCCTTTATAAGTATTTATTTCGTCATATCTCTAGTCAATGTGAGATTTTTCAACAGTCCTTTAGAAAATCGTCA GATGTTGGTACGCTTATTGGTTAATAGCACATGATGATGATGATGATGATTAGAGGGAATCTTTTTTTGTTATTTTCTCC TTAATGTAAAATTCGATGCATTGGTTGGTACTTTTGGTAAAATTGCTTCAGTAGGCTTGATTGTAGAACTTCTCATGAGT TTGGTCATGCTGCTCTCTTAACAGATAGATGAAAATGTACAGAGGGAAATTATAAACCACAGATCATTGAGACATCCCAA TATAGTCAGGTTCAAGGAGGTCTGTACACTCCCAATATCATATCCTATTTCTTCATATCATAGAAGTATCTTAGTTACTA CTTAGTCCTTTGATGGTGTGACTTTAGGTTATACTGACACCAACACATTTGGCAATTGTAATGGAATATGCTTCTGGAGG AGAGCTATTTGAGCGGATATGCAATGCTGGGAAGTTCAGTGAGGACGAGGTTCTTATCCGTCGCATTCATTCATTTGTGT AGTGCTGCTACTGCATATGCCTTTAATGCTCACTAATCTATTCTGCAGGCACGCTTTTTCTTCCAACAACTTATATCAGG TGTTAGCTACTGTCATGCAATGGTACATTGTAGTATTTGCTTTTACCCCAAGTGCATTTGCTGCTCAGAAGAAATAATGC GATGTCTGACTTGAGCTTCTCTATTTGTCTTCTTTAATGAAGCAAGTGTGCCATCGTGACTTGAAGTTGGAAAACACATT GTTGGATGGTAGCGCAGCTCCGCGTTTGAAAATTTGTGATTTTGGCTATTCAAAGGTATATAGAGTCTATATTTATCTGC TTTTTATTTTTTGATACCTTCACAGTTTATTGACTTTGTAGGTTTCTCCAAATTCTAGATCAAGCAAATTTCTGTATCTG TTATTTGTCTTTGGTTGATTAATTTCTGGTGCCCATGCATCTTGTTTGTCTTAAATTTTCAGTCCTCTGTGCTACATTCA CAACCAAAATCTACTGTTGGTACCCCTGCATATATTGCACCAGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGGTATG TGGTAACTTCTATCACTTTATAAGTTCATCTTACTAGTTAGATATTGATCATTTCCCATTAAAATGTTTGTCATTTAGAT TATGTGTTTCTATAAATTTTGATGATGATCACAGCTTATTTAGACCTTTTATACCATTAAGTTGATATTTGTGACCACAA TGACCTGTTGATTGGCTCCATTGCTATTAGACCCTCCCAACTTAAGTACCAGGAACCATTTGGTCTATTGTAAGCAACTT TACCTTGTTTTTTACACACGAGAGTACCCGTGACCTCAGTCCCATGGCAACAACTATTTACCATTGTGTCAAGGCTCCCC TTCTATTATTTTCTGTACTAATTATCTTAAATTGTTTAATCTATACTAATGTTGACACGCTCTTATGACTCAGATTGCAG ATGTATGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGTGCATATCCTTTTGAGGATCCAGAAGAACCTAAAAAT TTCCGCAAGACGATACATGTAACCCAGTGCACCTATTTTTTTTACTTTGATGTGTTTCTTTGACTGAATTAGTTTTCCTA AACTGCTGGATGTTGCTTGCAGAGGATTTTGAATGTTCAGTATTCAATTCCTGACTATGTTCACATATCTCCCGAATGCC GTCATCTGATCTCAAGGATTTTTGTTGCTGATCCTGCAAAGGTAAGTATTTTCCTTATTCATTTGCTGAAACTTTTGTGC CTTTTATTATATACTTGAATCTCATGATTTGCATGATTTATATGTGGATTGTTTAAGTGATATGTATTCTAAATTGATTC CATGTAATGTTCTAAAGCAGAGAATAACTATGCCTGAGATTAGAAACCATGAATGGTTTTTGAAAAACCTTCCAACTGAT CTAGTGGATGGGAATACGACGAACAACCAGTTTGAGGAGCCTGATCAACCGACGCAAAGCATCGATGAAATCATGCAGAT CATTTCTGAGGCTACGATTCCTGCAGCTGGAACTCAATCTCTCAACCAGTATCTTACTGGAAGCTTGGATATTGATGATG ACATGGATGATGACTTAGACACTGATCCTGACCTTGATATAGATAGTAGTGGAGAAATAGTTTATGCTATGTGA
CDS sequence (LotjaGi4g1v0070700.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCGACCTCCGACCGCTGTTGGGCCTGGAATGGATATGCCGATCATGCATGACAGTGATCGCTATGAGCTTGTGCG TGATATTGGTTGTGGAAATTTCGGGGTAGCTAGGCTCATGAGGGACAAACAGAACGATGAGCTTGTTGCTGTCAAGTATA TTGAGCGAGGTGAAAAGCAGATAGATGAAAATGTACAGAGGGAAATTATAAACCACAGATCATTGAGACATCCCAATATA GTCAGGTTCAAGGAGGTTATACTGACACCAACACATTTGGCAATTGTAATGGAATATGCTTCTGGAGGAGAGCTATTTGA GCGGATATGCAATGCTGGGAAGTTCAGTGAGGACGAGGCACGCTTTTTCTTCCAACAACTTATATCAGGTGTTAGCTACT GTCATGCAATGCAAGTGTGCCATCGTGACTTGAAGTTGGAAAACACATTGTTGGATGGTAGCGCAGCTCCGCGTTTGAAA ATTTGTGATTTTGGCTATTCAAAGTCCTCTGTGCTACATTCACAACCAAAATCTACTGTTGGTACCCCTGCATATATTGC ACCAGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTATGGTCTTGTGGGGTGACCTTATATGTCATGT TGGTGGGTGCATATCCTTTTGAGGATCCAGAAGAACCTAAAAATTTCCGCAAGACGATACATAGGATTTTGAATGTTCAG TATTCAATTCCTGACTATGTTCACATATCTCCCGAATGCCGTCATCTGATCTCAAGGATTTTTGTTGCTGATCCTGCAAA GAGAATAACTATGCCTGAGATTAGAAACCATGAATGGTTTTTGAAAAACCTTCCAACTGATCTAGTGGATGGGAATACGA CGAACAACCAGTTTGAGGAGCCTGATCAACCGACGCAAAGCATCGATGAAATCATGCAGATCATTTCTGAGGCTACGATT CCTGCAGCTGGAACTCAATCTCTCAACCAGTATCTTACTGGAAGCTTGGATATTGATGATGACATGGATGATGACTTAGA CACTGATCCTGACCTTGATATAGATAGTAGTGGAGAAATAGTTTATGCTATGTGA
Protein sequence (LotjaGi4g1v0070700.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRPPTAVGPGMDMPIMHDSDRYELVRDIGCGNFGVARLMRDKQNDELVAVKYIERGEKQIDENVQREIINHRSLRHPNI VRFKEVILTPTHLAIVMEYASGGELFERICNAGKFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSAAPRLK ICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQ YSIPDYVHISPECRHLISRIFVADPAKRITMPEIRNHEWFLKNLPTDLVDGNTTNNQFEEPDQPTQSIDEIMQIISEATI PAAGTQSLNQYLTGSLDIDDDMDDDLDTDPDLDIDSSGEIVYAM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 99 | 99 | 1.1E-35 | – | |
PANTHER | 8 | 359 | 352 | 6.2E-221 | – | |
PANTHER | 8 | 359 | 352 | 6.2E-221 | – | |
SUPERFAMILY | 15 | 320 | 306 | 1.29E-85 | ||
CDD | 22 | 279 | 258 | 0.0 | – | |
Pfam | 23 | 280 | 258 | 4.5E-72 | ||
SMART | 23 | 280 | 258 | 1.0E-98 | ||
ProSiteProfiles | 23 | 280 | 258 | 47.75 | ||
ProSitePatterns | 29 | 52 | 24 | - | ||
Gene3D | 100 | 288 | 189 | 9.7E-63 | – | |
ProSitePatterns | 139 | 151 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. |
Expression pattern of LotjaGi4g1v0070700.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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