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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0077700 |
| Transcript ID | LotjaGi4g1v0077700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat protein kinase family protein; TAIR: AT4G06744.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q8W3M4|Y4744_ARATH Uncharacterized protein At4g06744; TrEMBL-Plants: tr|K7L333|K7L333_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0077700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9976125..9978696) extracted from Lotus japonicus Gifu genome v1.2.
CTCGTGCTCCTTTTAGTTGTGCGGTATACAAAGGCCATATTGTGTTCCCATTTGAAGTCAGTGGTGCACGCATAATGATA GTTCGGAAATTAATGCTTGTTTACCGACCTCTACTTAAAAGAGTGCGGGGAATGTGGACAATTATTGTCAACATTCTTAA TAATCCACCACTATCAAAAGAAGAACGAGCATGCAAGTCATTTCATTATGGTACCACTGGAGAATTCAACACCATCCACT ATAAATCACTAACCAACACCATCCCCATTCAACCATGTGCTTCCCTCATTTTCTTTGAAATGATCATGGTTTTATTCAAG CAATATTCTTCAGTTACATTGTTTCTCCCCTTCCTTCTTTTCCTCCTAGTGAATTCCCAGATCATTGTAAGTCCATTACC ATTAGTCCCGGACATTTTAAGCTTCATAGACCAGAGGCTCGCTGAAGTCTTCCCAATCATCCAAACTTTCAAGAACACAA TCACCTCAGACCCTTTAGGAATAACCACAAATTGGGTCGGTCCCAACATATGCAACTACACAGGCTTCTACTGCGATCAC CCGCCGGATAACTTCACCGCCACCACGGTCGCCTCCATAGATTTCAACGGCTTTGGCCTCTCTGCGCCCACCCTTGACGG CTTCATCGATCAACTCCCAGACTTAGCACTCTTCCACGCCAATAGCAACAACTTCTCTGGCACCATTTCACCGAAAATAG CAACACTCAAGAACCTATACGAACTCGATCTAAGTAACAACTTGTTCTCTGGGGCATTTCCAACTTCTGTCCTTAACCTC CCTACATTATCCTTTTTGGATATCAGGTAAGCCAAAGATAAAATTTATAATTTCCTGATCTTATTCAAATGTGCGGAGAT TGCATATAAATACTAGTTTAAATAGTGTACAAATAATAAATATACAATAGAAAAAGTTTGGATTAAATCACCCTACTCTT AGCTAGACTTGTGATATTTAAGATATGTAGGTTAAAAACGTTTAACTGATTTATCTTAAATATTATTGGTCCAACAAAAA TTAGAGTAGTTTAACTCAAACTTTGCGACAAACTCCAAAGAAAAAATTTAAATTTGATTAATCTTGTGTACTAATAACGG TTACACTACTTTAGGTACAACCTCTTCACCGGCGTGTTGCCGCCACCAATTTTCACGCAACCATTGGACGCGATTTTTCT CAACAACAACAACTTCATCCTAACACTTCCCAACAATTTAGGGGACACGAAAGCAGCTTATCTCACCTTAGCCAACAACA AATTCACCGGCTCTATTCCCAGTAGCATTGGAAGAGCATCATCAACGTTGGTCGAAGTGCTGCTGTTGAACAATCTCTTA ACTGGTTGTCTCCCTTACCAAATTGGGTTCTTGAAAAATCTAACCGTGTTCGACGCAGGCGGGAACCGCTTGACGGGGCC GTTACCGTGCTCATTTGGGTGCTTGAAGAAAGTGGAGCAGCTAAACCTGGCGAGGAACATGCTGTCCGGACAGGTTCCAG AAGCGGTGTGCACGTTGAGGAGTTTGGCGAATTTTTCTCTGTCATATAATTACTTCACGGTATTGGGGCCCTTGTGCATG AAGTTGGTAAGAAGTGGTGTTTTGGATGTGAGGAAGAATTGTATTTCCGGTCTTCCTAATCAGAGATCTTTGACCGAGTG TGCAACGTTCTCCTTGCTTCCAACAACTTGTTCGCGCCCTGCATCGTGTAGTGACATGCCGTGTGAGGTTTCTTCAGGGA GCAAGCCACGAGAGAGAGCTAAAAGGAATTTGTTGTCATATTATGCTCTTTCGAGAAATAGAGTAGTTTTGTAACTCAAA ATTGTGTTTAGGTCACAAATATAGTGGAAATAGATTACCTAGAATAGTGTTTACCAACTGAAATCAATATGTTTAGTTGC ACGCTCTAATTACACTTACACTTGGTAGAGAAATGAAAATATGAGAGAGAATCAGAGAATAAAAGATATGAAATTGATGT ATAATAGGTAAAGAAGAAAGATATAAAAAAACGTAAGTAAAAATGAGATAAAAGAGAATATGAGTGTGAATGAATTGAAT TTCAACTAAAAATGACATGCACTTTAAATTATCATATAGCTGTTAGTATCACTTGAAAAGTTAATTAAGACAACATAAAA ATGTTTTCTCATGTCCTTTTAATGGTTGCGCTCTCTTATAATTGATTAATTTATCGAAGTTTTAATTAAAATGTCTTGAA AATTGGTGAGATATCCATTAAAATGATTTTGGTAAGAATGTTGATGACCTAGAAAAGTCAAAGTGATATAGATTCATGCA CAAATTTCAAGGATTTTTCAAAAGATACTTTGGATCTAGCACTTTCGAACTAGATCTTGAGAAGATGGATGATGGAGAGG AAAGGATTGAAGTGGTAGGCATCACTAGCATATAGAATCCATGCTTGATAAGCCTTATGAGGAAGGGCCACATAGAAAGG GTCAGATAAAAGAAACAACAATTACAAAGAAAATATGATAAGTTGGGGTGTATCACATGACAGTAAATGTACTCAAACTT TTATTTGTTCGA
CDS sequence (LotjaGi4g1v0077700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAGTTCGGAAATTAATGCTTGTTTACCGACCTCTACTTAAAAGAGTGCGGGGAATGTGGACAATTATTGTCAACAT TCTTAATAATCCACCACTATCAAAAGAAGAACGAGCATGCAAGTCATTTCATTATGGTACCACTGGAGAATTCAACACCA TCCACTATAAATCACTAACCAACACCATCCCCATTCAACCATGTGCTTCCCTCATTTTCTTTGAAATGATCATGGTTTTA TTCAAGCAATATTCTTCAGTTACATTGTTTCTCCCCTTCCTTCTTTTCCTCCTAGTGAATTCCCAGATCATTGTAAGTCC ATTACCATTAGTCCCGGACATTTTAAGCTTCATAGACCAGAGGCTCGCTGAAGTCTTCCCAATCATCCAAACTTTCAAGA ACACAATCACCTCAGACCCTTTAGGAATAACCACAAATTGGGTCGGTCCCAACATATGCAACTACACAGGCTTCTACTGC GATCACCCGCCGGATAACTTCACCGCCACCACGGTCGCCTCCATAGATTTCAACGGCTTTGGCCTCTCTGCGCCCACCCT TGACGGCTTCATCGATCAACTCCCAGACTTAGCACTCTTCCACGCCAATAGCAACAACTTCTCTGGCACCATTTCACCGA AAATAGCAACACTCAAGAACCTATACGAACTCGATCTAAGTAACAACTTGTTCTCTGGGGCATTTCCAACTTCTGTCCTT AACCTCCCTACATTATCCTTTTTGGATATCAGGTACAACCTCTTCACCGGCGTGTTGCCGCCACCAATTTTCACGCAACC ATTGGACGCGATTTTTCTCAACAACAACAACTTCATCCTAACACTTCCCAACAATTTAGGGGACACGAAAGCAGCTTATC TCACCTTAGCCAACAACAAATTCACCGGCTCTATTCCCAGTAGCATTGGAAGAGCATCATCAACGTTGGTCGAAGTGCTG CTGTTGAACAATCTCTTAACTGGTTGTCTCCCTTACCAAATTGGGTTCTTGAAAAATCTAACCGTGTTCGACGCAGGCGG GAACCGCTTGACGGGGCCGTTACCGTGCTCATTTGGGTGCTTGAAGAAAGTGGAGCAGCTAAACCTGGCGAGGAACATGC TGTCCGGACAGGTTCCAGAAGCGGTGTGCACGTTGAGGAGTTTGGCGAATTTTTCTCTGTCATATAATTACTTCACGGTA TTGGGGCCCTTGTGCATGAAGTTGGTAAGAAGTGGTGTTTTGGATGTGAGGAAGAATTGTATTTCCGGTCTTCCTAATCA GAGATCTTTGACCGAGTGTGCAACGTTCTCCTTGCTTCCAACAACTTGTTCGCGCCCTGCATCGTGTAGTGACATGCCGT GTGAGGTTTCTTCAGGGAGCAAGCCACGAGAGAGAGCTAAAAGGAATTTGTTGTCATATTATGCTCTTTCGAGAAATAGA GTAGTTTTGTAA
Protein sequence (LotjaGi4g1v0077700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIVRKLMLVYRPLLKRVRGMWTIIVNILNNPPLSKEERACKSFHYGTTGEFNTIHYKSLTNTIPIQPCASLIFFEMIMVL FKQYSSVTLFLPFLLFLLVNSQIIVSPLPLVPDILSFIDQRLAEVFPIIQTFKNTITSDPLGITTNWVGPNICNYTGFYC DHPPDNFTATTVASIDFNGFGLSAPTLDGFIDQLPDLALFHANSNNFSGTISPKIATLKNLYELDLSNNLFSGAFPTSVL NLPTLSFLDIRYNLFTGVLPPPIFTQPLDAIFLNNNNFILTLPNNLGDTKAAYLTLANNKFTGSIPSSIGRASSTLVEVL LLNNLLTGCLPYQIGFLKNLTVFDAGGNRLTGPLPCSFGCLKKVEQLNLARNMLSGQVPEAVCTLRSLANFSLSYNYFTV LGPLCMKLVRSGVLDVRKNCISGLPNQRSLTECATFSLLPTTCSRPASCSDMPCEVSSGSKPRERAKRNLLSYYALSRNR VVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 83 | 83 | - | – | |
| Phobius | 84 | 105 | 22 | - | – | |
| TMHMM | 84 | 106 | 23 | - | – | |
| PANTHER | 97 | 480 | 384 | 3.4E-190 | – | |
| PANTHER | 97 | 480 | 384 | 3.4E-190 | – | |
| Phobius | 106 | 483 | 378 | - | – | |
| Gene3D | 127 | 287 | 161 | 2.4E-25 | ||
| SUPERFAMILY | 132 | 423 | 292 | 9.35E-46 | – | |
| Gene3D | 289 | 481 | 193 | 8.8E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0077700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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