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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0081800 |
| Transcript ID | LotjaGi4g1v0081800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Clavata3/ESR (CLE) gene family member; TAIR: AT1G70895.1 CLAVATA3/ESR-RELATED 17; Swiss-Prot: sp|Q8L9H6|CLE17_ARATH CLAVATA3/ESR (CLE)-related protein 17; TrEMBL-Plants: tr|A0A193PF82|A0A193PF82_LOTJA CLAVATA3/ESR-related 42; Found in the gene: LotjaGi4g1v0081800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10672084..10673115) extracted from Lotus japonicus Gifu genome v1.2.
AGATCATGTGACTAGACCCACAAGACAAGGAAATAACCCAAACTTTTAGGTTTTTCTCTTTTTCATTTTTTATTTATTTG TCTCACTTCTCTTTCTATCTAATCCTTTTTCTGCTTTCTGAATTTGTCCAAAAATTTCAAATCACACTCTCTCCTGCTTC TAGTTTCCACACTCAGCTGCCTTTGTGTGAGTGTGTGCTAGGGTCAAACAAAGAGACATCATTTTTGTGCACTTTGATGG TGGTCTTGTGGGTGCTGCTGCAGCTGCTGCTACACTGAGTGACAACAACACCACCTACAACAAAAACAGCAACAACTAAC TGCCATGATAGGTTTCAGTTTCAGCAGAGAAAAAGAAAGGACATCATCAAGATCATCAGAGACAATTACAAGGCTTTCTT TAGCTAGAGCTGCAATTTTCTCCTTGTGGGTCATGTTAGTTTTTGCTCTTATATCCTTGCTTTTCTCCATCAACAACCAT GATCAAATTCAAACCACTCATTCAACTCCACGGCGAGTACTCAACAAAAAACATAGTTTCAGCACAACATTATTTCATCC ACCTTCTTCTTCAAGTGCTCAGAATATTGCAGAAAACACAGCCCTTTATGGAGATGACAAGAGAATTATTCACACCGGTC CAAATCCTCTGCACAACTAGATACTACTACTCAATTCCGTTCCATAATTCCTTCCATGGTAGGAATGAATGAAGATTTAA ATTTTGTATGCTAGTGTTTTAATTTAATGCATGGTCATGGTAGTTAGTTAGATTCCAGTGCATATCCCTATGTTATAATG GATCTGGGAACGAAGAATGAGAGCATAGCTTTAGCCTTTTCAGTACTGAGTGTGTTTAATGAGGACCATGTGCATTGTGC AGTCTGTAACAAAACGGAGAGGCTAGTGTTAATGCTCTCGTTTCTTTTGCAGTAATGAAATTTTCTGCTTTCTTTTTTGT ATCCTTGTGCTCAAAATAGAAAAACTCAGTGTGTGAATTTATTAATTTATTCATCTACTCTTTTTCTTCTTC
CDS sequence (LotjaGi4g1v0081800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAGGTTTCAGTTTCAGCAGAGAAAAAGAAAGGACATCATCAAGATCATCAGAGACAATTACAAGGCTTTCTTTAGC TAGAGCTGCAATTTTCTCCTTGTGGGTCATGTTAGTTTTTGCTCTTATATCCTTGCTTTTCTCCATCAACAACCATGATC AAATTCAAACCACTCATTCAACTCCACGGCGAGTACTCAACAAAAAACATAGTTTCAGCACAACATTATTTCATCCACCT TCTTCTTCAAGTGCTCAGAATATTGCAGAAAACACAGCCCTTTATGGAGATGACAAGAGAATTATTCACACCGGTCCAAA TCCTCTGCACAACTAG
Protein sequence (LotjaGi4g1v0081800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGFSFSREKERTSSRSSETITRLSLARAAIFSLWVMLVFALISLLFSINNHDQIQTTHSTPRRVLNKKHSFSTTLFHPP SSSSAQNIAENTALYGDDKRIIHTGPNPLHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 12 | 111 | 100 | 1.3E-26 | – | |
| PANTHER | 12 | 111 | 100 | 1.3E-26 | ||
| Phobius | 21 | 47 | 27 | - | – | |
| TMHMM | 27 | 49 | 23 | - | – | |
| Phobius | 48 | 111 | 64 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | System development | The process whose specific outcome is the progression of an organismal system over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process. |
Expression pattern of LotjaGi4g1v0081800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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