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LotjaGi4g1v0083100.2

Overview

Field Value
Gene ID LotjaGi4g1v0083100
Transcript ID LotjaGi4g1v0083100.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description DNA-directed RNA polymerase family protein; TAIR: AT2G15430.1 DNA-directed RNA polymerase family protein; Swiss-Prot: sp|Q39211|NRPB3_ARATH DNA-directed RNA polymerases II, IV and V subunit 3; TrEMBL-Plants: tr|A0A0L9TMW4|A0A0L9TMW4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0083100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:10878978..10882855) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGGGTGTTTCCTACGCGCGCATGCCGCGAGTGAAAATCCGAGAACTCAAGGACGACATGGCGAGGTTCGAGCTTCG CGACACCGACGCCAGCATCGCCAACGCGCTGCGGCGCGTGATGATATCGGAGGTGCCGACGATAGCCATCGACCTGGTGG AAATCGAGGTGAACTCGTCGGTGCTCAACGACGAGTTCATCGCTCACAGGCTCGGCTTGATTCCGCTCACCAGCGAGCGA GCCATGGCCATGCGATTCTCACGTGACTGCGACGCTTGTGACGGTGATGGACAGTGCGAGTTTTGCTCCGTCGAGTTTCA TCTTAGGGTTAAGTGCATGACTGATGAGACGCTTGATGTTACCAGCAAGGATCTCTATAGTTCTGATCACACCGTTGTCC CTGTTGATTTCTCTCCTGATACTTCTTCTGATTCCGCTGTGAACAAGTGATTCATCTGGCTCTTTGCTTGTGTGTTTTTC CTTTTTATACCTTGATTTCAACTGGGTATTTTGTTTTTTCAAATGGGTGTTCTTTGATTTCAACTGGGTATTTGGTTTTT TCAACTGGGTATTTGTTTTTTTCAAATGGGTTTTCTTATTTTTCAACTGGGTATTTGGTTTTTTCAAATGGGTCTTCATG GATTTCAACTGGGTATTTGGGTTTTTCAAATAGGTCTTCTTCGTTTTCAACTAGGTATTTGTTGTTTTTATGTCCTACAT TTTCAGTTGGGTATTTTTCTAATCTTGCTCTTGTATAATTGTTGTTTTACTTAGTGCTATGGCTGTATAAATTTTGATTT TGAGCAAGATGATTTTGGAAGTGAAAACTATTTGTTAGTTTCATAAATGGGCTTTGTTCGTATTCAACTTGGTGTTCTTC AGCATTTTGCTGTTTTTCTTTGGTGCTGTGACAATTTAGACTTATGGTTTAATAGGAGCATGCATTTGATATGGGTTTGT GTTCAATATAGGGGGATTATAATTGTCAAGCTGAGGAGAGGACAAGAGCTGAGGCTGAGAGCAATAGCTAGGAAGGGCAT TGGCAAAGATCATGCCAAATGGTCGCCTGCAGCAACTGTTTCCTTCATGTATGAACCAGAAATTCACATCAATGATGATT TAATGGAGACATTGACACTTAAGGAGAAAAAAGAATGGGTTGAAAGTTGTCCTACCCATGTGTTTGACATTGATGCAAAC ACGCAAAAGGTTCGGTTTTTCTCATTTGTTTTCTTATGATTTTGGTTATGGGCTTTTCACTGATTTCATCATTAATGCTA GTTTTACTGTTATCTGATACTTAAGCTCTTTGATTCTTGAATCCTCCTAACAATTACCTTGCATGTCTTCTGCCTTTGGT GCTTATTATTTCTGAACAAATTTGTGATTTTATGCTATGTCTAAACATTTTATAGTATACATTTTGTACCATCTTTATGT TTTGGTTGAAGTAGAAGGAAAGTATAATTTAAGATATCTCTTGTTATCTTTTTGCAATCAATGACTCATTGTGGACTGGT AGACTTCTAGACTCTAGTCCTTTTGAAGTAGGAAGGAAATCATTATCCTGCCTCAGATTGTGGATTGTGCAGATTGCTTG GGGTTAGCTGTGCAACATCATAATATTGCGAGATGCCGTGCTGTTGTCAAGTTTTGGACACCACTAAGTTTGCTAGTTGG GCTGCGCATCCCGACTCCATAAAAACTTATTTATGCATATCGAAACCCTTTAAACCCAATGTCCCTCTCCAGTGTAGCCT CTATTTCCATGTCCATCAAAGTCCAACCCTTCTGAGTGGTGCTATACTCTGGCTTAGTGTACTTCTGTTCATCTTAGATG ATTCAATCGATTTTGGTGGTGTTGCCTGGGTCTTCTTTAAGGTGCAACTGAGTGGTGGAATTGTGGGTTGATGGTTGTTT CAATAGTGACTTATGACTCTTTTTTCATTCTGTAGAAGCACCCAAAATGTTTTGGCTGTTTTTCGTAGGTGTTGAAGAAA ATATTGTTTCTTAAGTTATGTAAATTATAACTTCAATGAATTTGTGACTTTTGCATAAAATTTTATTTGGAATTTAGTTA AATGTTAGTAAAGGGGAGCCTTGGTATAACAGTTAGAGTCGTTTCCACGTGACTAGGTGTTCAGAGGTTCAATTTGTGGA ATCTTCCTCTTGCAAATGCAAGGTAAGGCTGCCTATGGGTCTAACTCTTCCCTAGGCTATGCCATAATGGAAGCTTTAGG CAGTAAGCACCTAGTTGCTTTTCTTTAGGTAACATTAGGTGGTGATTTATTACTATTATTAATTATTATTATTATTATTA TTATTTTAGTTGTTGATGTTGTTGGTGGTCGTGTCGTTGTTGTTGTTATTGTTAGATCCTCCAATCTGCTATCTTTCATC CCCCTCCTAATCCTAGGTAGGAACTTGATTTTGACAACCTTGGACTTTTAAGTGCATGGTGCTTCTTTCAAGCAAAATAA ATTTTACGTGTTAATAATCTTTTCAAGATTGGTTTTCAATTGTTTATTGAAACTACATGTAATATAGGCTTCCAGAATCA CATAGAGAAAGCACATGCAGTAACGAAGAAACAATTATTCTCCATATTTTCTTGAACCTGCGTGTAAAATATTATATTTA TTTCCCAGGGTGCAAGCATTAGTGTGCTAACTTCCTGCAAGATTTCTGATCTATCTTAAGAGAAAGAATGTTGTTCAAAT ATACATAGCCTTAGTGCCTATTCATCCCTTGAACATTATGCCTTCTGTCACTAATATTTTGGAGTCGGAGAAAGTTTTTT TACGTAGTTTCCATCACTTCCAAACTAAGGGGTCATGTAAAAGAAAAATTCTCCTTTGAATTTGAAAATTCAGGGGTAAA ATGAGCAACTTCTATGTCGTTCTAGGTTTTCACGACTTGTACTTGATCCCATAAATGTCTTTAAATGTAAGATATAACAT CTTAAGTGTAGAATGTGCATAAAGTAAAACATTACAAGAATGAATGTGATAGATTTGCTGTATCTAGACTGGTAAGGTCC TAAGCTAGCAATTTCTAGATGAGTCTTAGGCTGCAAAGAAATTTACAATGAAAAAGACATAGTATCAGGATTTATGATCC TGCTCATGATGGTTGCTGTAGCATGTCTGGGAGCATTATATGTGGAAGATATTGATTCTCTTTTCTGCTTAAGCAACACT TATAAAGAGTTATTGAAATTGTTGATATGATATCTGATCCATCTGGCTGATTTTGTCAACTCCTTAATCCTGAACATACT TTGTCTTTTGTGAACTGTTGATATGGAATGAAAAATTATAATTCTAGCAACACTCACTTCAACACTCATTGATTGGTTGG AATTAATGTTTAGTCCACTACACAAATTTAGTGTGGCTCGCATAAATTTCAACCAATTGTTGAGTGTTGAAAAAAGTGTT AAAGTGAGTGTTGTTACTTGTTTGCACTCCTCATGGTACTTAATACCTGATATCAGGTTCCGTTTGATTTGTTATTATGA ATCGTTCCTTCGTGTAATTATGTGTTGTTGAGCGAAAATGTTAAACTTTGACCATTTATCGTTCTAAGCTTTAACCATTT ATCAGGTATATGTTCATGAAGCTGAAAATTACTCGTATGATGATGAGGTGATTAAGAAAGCTGAAGCTATGGGCAAGCCC GGGCTTGTAGAAATCACTGCAAAGCAGGATAGCTTCATCTTTATAGTTGAAACTACCGGAGCAGTTAAAGCTTCTCAATT AGTGCTAAATGCCATTGAAATTCTCAAGCAGAAGCTGGATGCCGTGCGGCTATCTGAAGATACGGTGGAGGCTGATGATC AATTTGGTGAGCTAGGTGCACATATGCGAGGAGGATGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0083100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGGTGTTTCCTACGCGCGCATGCCGCGAGTGAAAATCCGAGAACTCAAGGACGACATGGCGAGGTTCGAGCTTCG CGACACCGACGCCAGCATCGCCAACGCGCTGCGGCGCGTGATGATATCGGAGGTGCCGACGATAGCCATCGACCTGGTGG AAATCGAGGTGAACTCGTCGGTGCTCAACGACGAGTTCATCGCTCACAGGCTCGGCTTGATTCCGCTCACCAGCGAGCGA GCCATGGCCATGCGATTCTCACGTGACTGCGACGCTTGTGACGGTGATGGACAGTGCGAGTTTTGCTCCGTCGAGTTTCA TCTTAGGGTTAAGTGCATGACTGATGAGACGCTTGATGTTACCAGCAAGGATCTCTATAGTTCTGATCACACCGTTGTCC CTGTTGATTTCTCTCCTGATACTTCTTCTGATTCCGCTTGCTATGGCTGTATAAATTTTGATTTTGAGGGGATTATAATT GTCAAGCTGAGGAGAGGACAAGAGCTGAGGCTGAGAGCAATAGCTAGGAAGGGCATTGGCAAAGATCATGCCAAATGGTC GCCTGCAGCAACTGTTTCCTTCATGTATGAACCAGAAATTCACATCAATGATGATTTAATGGAGACATTGACACTTAAGG AGAAAAAAGAATGGGTTGAAAGTTGTCCTACCCATGTGTTTGACATTGATGCAAACACGCAAAAGGTATATGTTCATGAA GCTGAAAATTACTCGTATGATGATGAGGTGATTAAGAAAGCTGAAGCTATGGGCAAGCCCGGGCTTGTAGAAATCACTGC AAAGCAGGATAGCTTCATCTTTATAGTTGAAACTACCGGAGCAGTTAAAGCTTCTCAATTAGTGCTAAATGCCATTGAAA TTCTCAAGCAGAAGCTGGATGCCGTGCGGCTATCTGAAGATACGGTGGAGGCTGATGATCAATTTGGTGAGCTAGGTGCA CATATGCGAGGAGGATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0083100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER AMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSACYGCINFDFEGIII VKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEPEIHINDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHE AENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGA HMRGG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11800:SF2
5 315 311 5.4E-107 –
PANTHER
PTHR11800
5 315 311 5.4E-107 –
CDD
cd07031
10 308 299 4.76026E-127 –
SUPERFAMILY
SSF55257
10 306 297 2.75E-33
IPR036603
Gene3D
G3DSA:3.30.1360.270
11 298 288 3.9E-88 –
SMART
SM00662
21 305 285 1.1E-89
IPR011263
Pfam
PF01193
23 299 277 2.4E-21
IPR011263
ProSitePatterns
PS00446
35 75 41 -
IPR001514
SUPERFAMILY
SSF56553
46 188 143 5.93E-39
IPR036643
Gene3D
G3DSA:2.170.120.12
47 184 138 3.9E-88
IPR036643
Pfam
PF01000
53 187 135 1.7E-32
IPR011262

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003899
Molecular function DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0083100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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