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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036603
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 9 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.364s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0525600.1
n.a. DNA-directed RNA polymerase; TAIR: AT2G29540.1 RNApolymerase 14 kDa subunit; Swiss-Prot: sp|P97304|RPAC2_MOUSE DNA-directed RNA polymerases I and III subunit RPAC2; TrEMBL-Plants: tr|I3S968|I3S968_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0525600 LjG1.1_chr1 105255692 105258913 +
3 domain predictions
2 GO terms
LotjaGi3g1v0550300.1
n.a. DNA-directed RNA polymerase; TAIR: AT3G52090.1 DNA-directed RNA polymerase, RBP11-like protein; Swiss-Prot: sp|Q38859|NRPBB_ARATH DNA-directed RNA polymerases II, IV and V subunit 11; TrEMBL-Plants: tr|I3T213|I3T213_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0550300 LjG1.1_chr3 96722653 96724612 -
3 domain predictions
2 GO terms
LotjaGi3g1v0550300.2
n.a. DNA-directed RNA polymerase; TAIR: AT3G52090.1 DNA-directed RNA polymerase, RBP11-like protein; Swiss-Prot: sp|Q38859|NRPBB_ARATH DNA-directed RNA polymerases II, IV and V subunit 11; TrEMBL-Plants: tr|I3T213|I3T213_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0550300 LjG1.1_chr3 96723572 96724512 -
3 domain predictions
2 GO terms
LotjaGi3g1v0550300.3
n.a. DNA-directed RNA polymerase; TAIR: AT3G52090.1 DNA-directed RNA polymerase, RBP11-like protein; Swiss-Prot: sp|Q38859|NRPBB_ARATH DNA-directed RNA polymerases II, IV and V subunit 11; TrEMBL-Plants: tr|I3T213|I3T213_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0550300 LjG1.1_chr3 96723772 96724512 -
3 domain predictions
2 GO terms
LotjaGi4g1v0083100.1
n.a. DNA-directed RNA polymerase family protein; TAIR: AT2G15430.1 DNA-directed RNA polymerase family protein; Swiss-Prot: sp|Q39211|NRPB3_ARATH DNA-directed RNA polymerases II, IV and V subunit 3; TrEMBL-Plants: tr|A0A0L9TMW4|A0A0L9TMW4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0083100 LjG1.1_chr4 10878856 10883221 +
2 domain predictions
2 GO terms
LotjaGi4g1v0083100.2
n.a. DNA-directed RNA polymerase family protein; TAIR: AT2G15430.1 DNA-directed RNA polymerase family protein; Swiss-Prot: sp|Q39211|NRPB3_ARATH DNA-directed RNA polymerases II, IV and V subunit 3; TrEMBL-Plants: tr|A0A0L9TMW4|A0A0L9TMW4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0083100 LjG1.1_chr4 10878978 10882855 +
2 domain predictions
2 GO terms
LotjaGi6g1v0141400.1
n.a. DNA-directed RNA polymerase; TAIR: AT1G60620.1 RNA polymerase I subunit 43; Swiss-Prot: sp|Q54SN4|RPAC1_DICDI DNA-directed RNA polymerases I and III subunit rpac1; TrEMBL-Plants: tr|I1N089|I1N089_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0141400 LjG1.1_chr6 40892128 40897249 +
2 domain predictions
2 GO terms
LotjaGi6g1v0141400.2
n.a. DNA-directed RNA polymerase; TAIR: AT1G60620.1 RNA polymerase I subunit 43; Swiss-Prot: sp|Q54SN4|RPAC1_DICDI DNA-directed RNA polymerases I and III subunit rpac1; TrEMBL-Plants: tr|G7IXS2|G7IXS2_MEDTR DNA-directed RNA polymerase; Found in the gene: LotjaGi6g1v0141400 LjG1.1_chr6 40892857 40894156 +
2 domain predictions
2 GO terms
LotjaGi6g1v0284900.1
n.a. DNA-directed RNA polymerase; TAIR: AT2G29540.1 RNApolymerase 14 kDa subunit; Swiss-Prot: sp|P97304|RPAC2_MOUSE DNA-directed RNA polymerases I and III subunit RPAC2; TrEMBL-Plants: tr|I3S968|I3S968_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0284900 LjG1.1_chr6 60133026 60137218 -
3 domain predictions
2 GO terms